mRNA_S-ischiensis_contig8.19592.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19592.1
Unique NamemRNA_S-ischiensis_contig8.19592.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2389771..2390174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size404
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19592.1prot_S-ischiensis_contig8.19592.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2389861..2390160 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.7823398-UTR-S-ischiensis_contig8:2389770..23898601622817267.7823398-UTR-S-ischiensis_contig8:2389770..2389860Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2389771..2389860 +
1695740981.654851-UTR-S-ischiensis_contig8:2389770..23898601695740981.654851-UTR-S-ischiensis_contig8:2389770..2389860Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2389771..2389860 +
1622817267.810207-UTR-S-ischiensis_contig8:2390160..23901741622817267.810207-UTR-S-ischiensis_contig8:2390160..2390174Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2390161..2390174 +
1695740981.682857-UTR-S-ischiensis_contig8:2390160..23901741695740981.682857-UTR-S-ischiensis_contig8:2390160..2390174Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2390161..2390174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.7983294-CDS-S-ischiensis_contig8:2389860..23901601622817267.7983294-CDS-S-ischiensis_contig8:2389860..2390160Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2389861..2390160 +
1695740981.669791-CDS-S-ischiensis_contig8:2389860..23901601695740981.669791-CDS-S-ischiensis_contig8:2389860..2390160Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2389861..2390160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19592.1

>prot_S-ischiensis_contig8.19592.1 ID=prot_S-ischiensis_contig8.19592.1|Name=mRNA_S-ischiensis_contig8.19592.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=100bp
MIQGPGSVVSTVGRWLVTRGSGQGGHQSSTRQPFEMKLQGDPGLIFVGSS
PGIMKRRLTKTAPSSEQTAVAPPQKKGTSPEPSTFRYYAIDDRTARTAP*
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mRNA from alignment at S-ischiensis_contig8:2389771..2390174+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19592.1 ID=mRNA_S-ischiensis_contig8.19592.1|Name=mRNA_S-ischiensis_contig8.19592.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=404bp|location=Sequence derived from alignment at S-ischiensis_contig8:2389771..2390174+ (Schizocladia ischiensis KU_0333)
TCTTTCCGCTATCACAGCGTTCAGCTGTTCCGGATGGAACAGGAGTTGGC
CGCGCAGGTATGCAAGCCTTTGTAAAAATCCTGCCCAACGATGATTCAAG
GTCCCGGATCTGTGGTCTCCACAGTAGGGCGCTGGTTGGTGACTCGTGGC
AGTGGGCAGGGGGGGCATCAGTCATCAACCCGTCAGCCCTTTGAAATGAA
GTTGCAGGGTGATCCTGGCCTGATCTTCGTCGGCTCTAGCCCTGGTATCA
TGAAGCGACGACTTACAAAGACTGCGCCCAGTTCAGAGCAGACTGCAGTT
GCGCCCCCACAAAAAAAAGGCACCTCGCCAGAACCCAGTACCTTCAGGTA
CTATGCCATTGATGATCGCACGGCACGCACAGCACCTTGATGGAGACGCC
GCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2389771..2390174+

>mRNA_S-ischiensis_contig8.19592.1 ID=mRNA_S-ischiensis_contig8.19592.1|Name=mRNA_S-ischiensis_contig8.19592.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=600bp|location=Sequence derived from alignment at S-ischiensis_contig8:2389771..2390174+ (Schizocladia ischiensis KU_0333)
ATGATTCAAGGTCCCGGATCTGTGGTCTCCACAGTAGGGCGCTGGTTGGT
GACTCGTGGCAGTGGGCAGGGGGGGCATCAGTCATCAACCCGTCAGCCCT
TTGAAATGAAGTTGCAGGGTGATCCTGGCCTGATCTTCGTCGGCTCTAGC
CCTGGTATCATGAAGCGACGACTTACAAAGACTGCGCCCAGTTCAGAGCA
GACTGCAGTTGCGCCCCCACAAAAAAAAGGCACCTCGCCAGAACCCAGTA
CCTTCAGGTACTATGCCATTGATGATCGCACGGCACGCACAGCACCTTGA
ATGATTCAAGGTCCCGGATCTGTGGTCTCCACAGTAGGGCGCTGGTTGGT
GACTCGTGGCAGTGGGCAGGGGGGGCATCAGTCATCAACCCGTCAGCCCT
TTGAAATGAAGTTGCAGGGTGATCCTGGCCTGATCTTCGTCGGCTCTAGC
CCTGGTATCATGAAGCGACGACTTACAAAGACTGCGCCCAGTTCAGAGCA
GACTGCAGTTGCGCCCCCACAAAAAAAAGGCACCTCGCCAGAACCCAGTA
CCTTCAGGTACTATGCCATTGATGATCGCACGGCACGCACAGCACCTTGA
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