mRNA_S-ischiensis_contig8.19583.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19583.1
Unique NamemRNA_S-ischiensis_contig8.19583.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19583.1 vs. uniprot
Match: A0A060TAB0_BLAAD (Alpha-mannosidase n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060TAB0_BLAAD)

HSP 1 Score: 105 bits (262), Expect = 1.180e-24
Identity = 43/66 (65.15%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   42 VYCVGHCHLDCAWLWSYRETRRKIARSWSTQLELLSRHPRMVFAASQAAQFSWLKEDFPDMYERLK 239
            V+ VGHCH+D AWLW Y ETRRKIARSW++QL+L+ R+P   FA SQA Q+ WLKED+P+++ERLK
Sbjct:  271 VFAVGHCHIDTAWLWPYAETRRKIARSWASQLDLIERYPEYNFACSQAIQYQWLKEDYPELFERLK 336          
BLAST of mRNA_S-ischiensis_contig8.19583.1 vs. uniprot
Match: A0A642VDS0_9ASCO (Alpha-mannosidase n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642VDS0_9ASCO)

HSP 1 Score: 104 bits (259), Expect = 3.000e-24
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 3
Query:   42 VYCVGHCHLDCAWLWSYRETRRKIARSWSTQLELLSRHPRMVFAASQAAQFSWLKEDFPDMYERLK 239
            V  VGHCH+D AWLW Y ETRRKIARSWS+QL+L+ R+P   F  SQA Q+ WLKED+P+++ERLK
Sbjct:  270 VVAVGHCHIDTAWLWPYAETRRKIARSWSSQLDLMERYPEYKFVCSQAVQYQWLKEDYPELFERLK 335          
BLAST of mRNA_S-ischiensis_contig8.19583.1 vs. uniprot
Match: A0A1E4TDL9_9ASCO (Alpha-mannosidase n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TDL9_9ASCO)

HSP 1 Score: 103 bits (256), Expect = 7.620e-24
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 3
Query:   42 VYCVGHCHLDCAWLWSYRETRRKIARSWSTQLELLSRHPRMVFAASQAAQFSWLKEDFPDMYERLKGA 245
            V  +GHCH+D AWLW Y ETRRKIARSWS QLEL  R+P + FA SQA QF WL ED+PD+++R+K A
Sbjct:  274 VEAMGHCHIDTAWLWPYAETRRKIARSWSNQLELFERYPELHFACSQAQQFQWLLEDYPDLFKRVKDA 341          
BLAST of mRNA_S-ischiensis_contig8.19583.1 vs. uniprot
Match: S9W024_SCHCR (Alpha-mannosidase n=1 Tax=Schizosaccharomyces cryophilus (strain OY26 / ATCC MYA-4695 / CBS 11777 / NBRC 106824 / NRRL Y48691) TaxID=653667 RepID=S9W024_SCHCR)

HSP 1 Score: 102 bits (255), Expect = 1.040e-23
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 3
Query:   42 VYCVGHCHLDCAWLWSYRETRRKIARSWSTQLELLSRHPRMVFAASQAAQFSWLKEDFPDMYERLK 239
            VY VGHCH+D AWLW + ETRRKI RSW+TQL LL R+P   F  SQA Q+ WLKED P+ YERLK
Sbjct:  285 VYAVGHCHIDTAWLWPFAETRRKIVRSWTTQLNLLDRYPEYRFVCSQAQQYEWLKEDHPETYERLK 350          
BLAST of mRNA_S-ischiensis_contig8.19583.1 vs. uniprot
Match: A0A536CIH6_9CHLR (Alpha-mannosidase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536CIH6_9CHLR)

HSP 1 Score: 101 bits (252), Expect = 2.630e-23
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 3
Query:   42 VYCVGHCHLDCAWLWSYRETRRKIARSWSTQLELLSRHPRMVFAASQAAQFSWLKEDFPDMYERLKGA 245
            +  VGH H+D AWLW  RE RRK ARSWSTQL L+  HP  VFAASQ AQ++W+KE +PD+YER+K A
Sbjct:  163 ITAVGHAHIDTAWLWPLREARRKCARSWSTQLALMDEHPDYVFAASQPAQYAWMKESYPDLYERIKAA 230          
BLAST of mRNA_S-ischiensis_contig8.19583.1 vs. uniprot
Match: A0A535KZS2_9CHLR (Alpha-mannosidase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535KZS2_9CHLR)

HSP 1 Score: 101 bits (251), Expect = 3.100e-23
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 3
Query:   42 VYCVGHCHLDCAWLWSYRETRRKIARSWSTQLELLSRHPRMVFAASQAAQFSWLKEDFPDMYERLKGA 245
            +  VGH H+D AWLW  RE RRK ARSWSTQL L+  HP  VFAASQ AQ++W+KE +PD+YER+K A
Sbjct:   74 ITAVGHAHIDTAWLWPLREARRKCARSWSTQLALMDEHPDYVFAASQPAQYAWVKESYPDLYERIKAA 141          
BLAST of mRNA_S-ischiensis_contig8.19583.1 vs. uniprot
Match: A0A2T0FHR9_9ASCO (Alpha-mannosidase n=1 Tax=Wickerhamiella sorbophila TaxID=45607 RepID=A0A2T0FHR9_9ASCO)

HSP 1 Score: 100 bits (250), Expect = 4.920e-23
Identity = 42/69 (60.87%), Postives = 56/69 (81.16%), Query Frame = 3
Query:   39 MVYCVGHCHLDCAWLWSYRETRRKIARSWSTQLELLSRHPRMVFAASQAAQFSWLKEDFPDMYERLKGA 245
            +VY +G+CH+D AWLW + ETRRKIARSW++QL L+ R+P   F+ASQA QFSWL ED PD+++R+K A
Sbjct:  276 IVYAMGNCHIDTAWLWPFAETRRKIARSWASQLNLIERYPEYKFSASQAVQFSWLLEDHPDLFDRVKQA 344          
BLAST of mRNA_S-ischiensis_contig8.19583.1 vs. uniprot
Match: A0A8J5E9Y9_9ASCO (Alpha-mannosidase n=1 Tax=Yarrowia sp. B02 TaxID=2768839 RepID=A0A8J5E9Y9_9ASCO)

HSP 1 Score: 100 bits (250), Expect = 4.930e-23
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 3
Query:   36 GMVYCVGHCHLDCAWLWSYRETRRKIARSWSTQLELLSRHPRMVFAASQAAQFSWLKEDFPDMYERLK 239
            G+VY +G+CH+D AWLW + ETRRK  RSW++QLEL+ ++P  VF ASQA QF WLKED+PD++ +++
Sbjct:  275 GLVYALGNCHIDTAWLWPFAETRRKAGRSWASQLELIDKYPEYVFVASQAQQFKWLKEDYPDLFAKIQ 342          
BLAST of mRNA_S-ischiensis_contig8.19583.1 vs. uniprot
Match: Q6C883_YARLI (Alpha-mannosidase n=3 Tax=Yarrowia TaxID=4951 RepID=Q6C883_YARLI)

HSP 1 Score: 100 bits (250), Expect = 4.930e-23
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 3
Query:   36 GMVYCVGHCHLDCAWLWSYRETRRKIARSWSTQLELLSRHPRMVFAASQAAQFSWLKEDFPDMYERLK 239
            G+VY +G+CH+D AWLW + ETRRK  RSW++QLEL+ ++P  VF ASQA QF WLKED+PD++ +++
Sbjct:  276 GLVYALGNCHIDTAWLWPFAETRRKAGRSWASQLELIDKYPEYVFVASQAQQFKWLKEDYPDLFAKIQ 343          
BLAST of mRNA_S-ischiensis_contig8.19583.1 vs. uniprot
Match: A0A161HNB9_9ASCO (Alpha-mannosidase n=1 Tax=Sugiyamaella lignohabitans TaxID=796027 RepID=A0A161HNB9_9ASCO)

HSP 1 Score: 100 bits (250), Expect = 4.930e-23
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 3
Query:   27 GGMGMVYCVGHCHLDCAWLWSYRETRRKIARSWSTQLELLSRHPRMVFAASQAAQFSWLKEDFPDMYERLK 239
            G   ++  +GHCH+D AWLW Y ETRRKI RSW++QL+L+ R+P   FA SQA Q+ WLKED+P+++ERLK
Sbjct:  281 GSEAVISGLGHCHIDTAWLWPYAETRRKIGRSWASQLDLIQRYPEYNFACSQAVQYQWLKEDYPELFERLK 351          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A060TAB0_BLAAD1.180e-2465.15Alpha-mannosidase n=1 Tax=Blastobotrys adeninivora... [more]
A0A642VDS0_9ASCO3.000e-2465.15Alpha-mannosidase n=1 Tax=Trichomonascus ciferrii ... [more]
A0A1E4TDL9_9ASCO7.620e-2464.71Alpha-mannosidase n=1 Tax=Tortispora caseinolytica... [more]
S9W024_SCHCR1.040e-2366.67Alpha-mannosidase n=1 Tax=Schizosaccharomyces cryo... [more]
A0A536CIH6_9CHLR2.630e-2363.24Alpha-mannosidase n=1 Tax=Chloroflexi bacterium Ta... [more]
A0A535KZS2_9CHLR3.100e-2363.24Alpha-mannosidase (Fragment) n=1 Tax=Chloroflexi b... [more]
A0A2T0FHR9_9ASCO4.920e-2360.87Alpha-mannosidase n=1 Tax=Wickerhamiella sorbophil... [more]
A0A8J5E9Y9_9ASCO4.930e-2357.35Alpha-mannosidase n=1 Tax=Yarrowia sp. B02 TaxID=2... [more]
Q6C883_YARLI4.930e-2357.35Alpha-mannosidase n=3 Tax=Yarrowia TaxID=4951 RepI... [more]
A0A161HNB9_9ASCO4.930e-2357.75Alpha-mannosidase n=1 Tax=Sugiyamaella lignohabita... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2321697..2322510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.7390237-CDS-S-ischiensis_contig8:2321696..23217331622817260.7390237-CDS-S-ischiensis_contig8:2321696..2321733Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2321697..2321733 -
1695740977.2944684-CDS-S-ischiensis_contig8:2321696..23217331695740977.2944684-CDS-S-ischiensis_contig8:2321696..2321733Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2321697..2321733 -
1622817260.7501774-CDS-S-ischiensis_contig8:2322301..23225101622817260.7501774-CDS-S-ischiensis_contig8:2322301..2322510Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2322302..2322510 -
1695740977.309637-CDS-S-ischiensis_contig8:2322301..23225101695740977.309637-CDS-S-ischiensis_contig8:2322301..2322510Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2322302..2322510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19583.1prot_S-ischiensis_contig8.19583.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2321697..2322510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19583.1

>prot_S-ischiensis_contig8.19583.1 ID=prot_S-ischiensis_contig8.19583.1|Name=mRNA_S-ischiensis_contig8.19583.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=82bp
RRRPRTPAPGAWAWCTAWATAIWTARGFGVIGKQGARSRGAGRRSWSCCP
GTLAWCLRRARRRSSAGSRRTFPTCTSASRGR
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mRNA from alignment at S-ischiensis_contig8:2321697..2322510-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19583.1 ID=mRNA_S-ischiensis_contig8.19583.1|Name=mRNA_S-ischiensis_contig8.19583.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=814bp|location=Sequence derived from alignment at S-ischiensis_contig8:2321697..2322510- (Schizocladia ischiensis KU_0333)
CGGCGGCGGCCGCGGACCCCAGCGCCGGGGGCATGGGCATGGTGTACTGC GTGGGCCACTGCCATCTGGACTGCGCGTGGCTTTGGAGTTATCGGGAAAC AAGGCGCAAGATCGCGAGGAGCTGGTCGACGCAGCTGGAGCTGCTGTCCC GGCACCCTCGCATGGTGTTTGCGGCGAGCCAGGCGGCGCAGTTCAGCTGG CTCAAGGAGGTGAGCAGGCATGGGTGGGGGTGTGGGGGTGGGTATGGGTG TGGGGGGGGGGGGGCGTGTGCACACGCTCAGTTGTCCGAAACAACGTACT ACGTAGTACTAAAGTTAATCCTCTAAGTACTTCTGAAGTACCAATAACTT CTGCTGTTAAGTAGTACGTGTATGTGTGTACTCACGTTGTGCTTGCCGTG TCCCGCGACCATTGGCCGCGCCTTGACCGAGACGGAGCAGGAACCCACCC CCCGGCCCCGGGCATGTGTATGTGCACTCGAGTATGTACAGTACTCAGTG GCTTAGCAGTCTTGCGGCACAACCTTGCGTTGGTTGGTCACATAGTCGAC AGCCTAAAGAACGAAGAGAGACTAGAGTATATGTATACTCTACTTACAAG TACTCACTATATGTGCTCGCCTTGTGCTTGCCATAGTCCCGAGACCATTG ACCGCGCGCCTCGGCCGAGACGGAGCAGTAGTACCAACACTATTCTAGAC CTTCGCTCGCTTTCCCCCTTTTGCCCCGCGCAACCCCCTCCCCGCGCGCA CACGTCTGCCTCCCCCCACCCACCCAGGACTTTCCCGACATGTACGAGCG CCTCAAGGGGGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2321697..2322510-

>mRNA_S-ischiensis_contig8.19583.1 ID=mRNA_S-ischiensis_contig8.19583.1|Name=mRNA_S-ischiensis_contig8.19583.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=492bp|location=Sequence derived from alignment at S-ischiensis_contig8:2321697..2322510- (Schizocladia ischiensis KU_0333)
CGGCGGCGGCCGCGGACCCCAGCGCCGGGGGCATGGGCATGGTGTACTGC
GTGGGCCACTGCCATCTGGACTGCGCGTGGCTTTGGAGTTATCGGGAAAC
AAGGCGCAAGATCGCGAGGAGCTGGTCGACGCAGCTGGAGCTGCTGTCCC
GGCACCCTCGCATGGTGTTTGCGGCGAGCCAGGCGGCGCAGTTCAGCTGG
CTCAAGGAGCGGCGGCGGCCGCGGACCCCAGCGCCGGGGGCATGGGCATG
GTGTACTGCGTGGGCCACTGCCATCTGGACTGCGCGTGGCTTTGGAGTTA
TCGGGAAACAAGGCGCAAGATCGCGAGGAGCTGGTCGACGCAGCTGGAGC
TGCTGTCCCGGCACCCTCGCATGGTGTTTGCGGCGAGCCAGGCGGCGCAG
TTCAGCTGGCTCAAGGAGGACTTTCCCGACATGTACGAGCGCCTCAAGGG
GGCGGGACTTTCCCGACATGTACGAGCGCCTCAAGGGGGCGG
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