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Homology
BLAST of mRNA_S-ischiensis_contig8.19579.1 vs. uniprot
Match: A0A7X9QF12_9ACTN (Alpha-mannosidase n=1 Tax=Propionibacterium sp. TaxID=1977903 RepID=A0A7X9QF12_9ACTN) HSP 1 Score: 63.9 bits (154), Expect = 4.000e-10 Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = 2
Query: 164 LILRLYETYGGRGPARLCVPDLSYALVQVVEMRECNLLEEPGEPVLWDPT---HLEARLEFRPFEIKSLLVMLARTSLP 391
LI+RLYE+ GGR RL V DL V + E +LLE PGEPV W T H LEFRPF++++L + RTS P
Sbjct: 74 LIVRLYESAGGRTTTRL-VMDLP----AVESVHEADLLERPGEPVAWSATDGVHASVVLEFRPFQLRTLRITPGRTSWP 147
BLAST of mRNA_S-ischiensis_contig8.19579.1 vs. uniprot
Match: A0A7Y5UNU8_9BACT (Alpha-mannosidase n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A7Y5UNU8_9BACT) HSP 1 Score: 52.4 bits (124), Expect = 4.500e-5 Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 2
Query: 164 LILRLYETYGGRGPARLCVPDLSYALVQVVEMRECNLLEEPGEPVLWDPTHLEARLEFRPFEIKSLLV 367
LILRLYE+ G RGP ++ V+E+ ECNL+EE G+P+ RL+ PFEIK+L +
Sbjct: 981 LILRLYESQGSRGPVKIAFG------FPVLEVSECNLMEEAGQPL--KVAKNAVRLDMGPFEIKTLKI 1040
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 431 |
| Cds size | 414 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817260.5671992-UTR-S-ischiensis_contig8:2308708..2308724 | 1622817260.5671992-UTR-S-ischiensis_contig8:2308708..2308724 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 2308709..2308724 - |
| 1695740977.1676695-UTR-S-ischiensis_contig8:2308708..2308724 | 1695740977.1676695-UTR-S-ischiensis_contig8:2308708..2308724 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 2308709..2308724 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817260.5786304-CDS-S-ischiensis_contig8:2308724..2308891 | 1622817260.5786304-CDS-S-ischiensis_contig8:2308724..2308891 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2308725..2308891 - |
| 1695740977.1775467-CDS-S-ischiensis_contig8:2308724..2308891 | 1695740977.1775467-CDS-S-ischiensis_contig8:2308724..2308891 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2308725..2308891 - |
| 1622817260.5901988-CDS-S-ischiensis_contig8:2310093..2310280 | 1622817260.5901988-CDS-S-ischiensis_contig8:2310093..2310280 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2310094..2310280 - |
| 1695740977.1862447-CDS-S-ischiensis_contig8:2310093..2310280 | 1695740977.1862447-CDS-S-ischiensis_contig8:2310093..2310280 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2310094..2310280 - |
| 1622817260.6022515-CDS-S-ischiensis_contig8:2310516..2310576 | 1622817260.6022515-CDS-S-ischiensis_contig8:2310516..2310576 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2310517..2310576 - |
| 1695740977.1954436-CDS-S-ischiensis_contig8:2310516..2310576 | 1695740977.1954436-CDS-S-ischiensis_contig8:2310516..2310576 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2310517..2310576 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19579.1 >prot_S-ischiensis_contig8.19579.1 ID=prot_S-ischiensis_contig8.19579.1|Name=mRNA_S-ischiensis_contig8.19579.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=138bp
SSSSRRRRRRRREPSATARSGDVRPLGGAHVPHTGRVGVLLQARRRPGPP
RHPVAHPPPLRDLRRPRPRPPVRAGSVLRARAGGGDEGVQPPGRARRART
LGPHPPGGAPGVPPVRDQEPAGHAGEDLAAARDVFMI* back to topmRNA from alignment at S-ischiensis_contig8:2308709..2310576- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig8.19579.1 ID=mRNA_S-ischiensis_contig8.19579.1|Name=mRNA_S-ischiensis_contig8.19579.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1868bp|location=Sequence derived from alignment at S-ischiensis_contig8:2308709..2310576- (Schizocladia ischiensis KU_0333)
AGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGAGAACCGAGTGCCAC
GGCCCGTTCGGTGCGGTTTGTTTGTTGCGGCATCGTTGTTGTTGGTGTTT
GTTCTTGCTGTGCGGTGCCCACGACACCACGGGCACAGGAATGAAAACCA
ACCAACCCCCAAACGCTCCCTTTCTTTCCTCGGGTGCGTGTTGCACTGAT
CGTCCGGCAGGGAGACTGAAACCAATCCCCCAACGCTCCCTTTCTTTCCT
CCTCCCTCGGGTGTGTATTGTACTCTGCTGATCGTCCGTCCGGCAGGGGG
ATGTCCGCCCTCTCGGTGGAGCCCATGTGCCCCACACTGGGCGTGTCGGT
GTCCTGCTTCAAGCCCGCCGTCGACCCGGGCCCCCCCGGCACCCTGTCGC
TCATCCTCCGCCTCTACGAGACCTACGGCGGCCGCGGCCCCGCCCGCCTG
TGCGTGCCGGATCTGTCCTACGCGCTCGTGCAGGTGAGGAAATTAACCCT
TGTACCCCTTCTAAATTGGACTTACACACTAAAACCCTATGATTATATGG
ACCCCAAGGGTAAAAGGGTTAAGGGGGGGCAGAGAGAGAGGTGAGGGGAG
GGGAAGGGAGGGAGGAGGGGAGAGGAAGGGGGGGGGTGGGGGAGGGGGAG
GGGGGGGGAGGTGGGACAGGAGGGGAGCGCGTGCGATGAGGCCTTTAGGG
GCGTGCGATTGAACTACAGCTGTAGCCAAGTTGCGGTGCTGGCATTGCGC
TTTTTGCCTGTCGACGGGGTTGGTGGAGGTCACCAATTTTGAGGAGGAGC
TGCGCGCGTGCTTGAGACGCTTGGAAGGCATCTGCTGCTCCAAGGCGCTT
GCGAGGTACAGTACAGTAGCAGTGCTTCGAAGTACTTGAGTGGCACATAT
ATACGAGTAGTACTTCCAGGCAGAATTGTACTTCGAAGTAGTACAGTAGT
ACCTCGAAGTACTCGAGTGCATTGCCGCGTGCATAGCACTGCGATAGTTG
CCGCCCGACGTGGCGCGGGGGTAGCAATCAAACGCTACAGTAGGCGTCGC
ACGACAGGCGAGGCCCAACGAGGGAGAAGACCGACCGAACGGCCTCGGGT
CTCCACACGGCGTGTACCGCACTGTACCGTGCGGTGCTTCCAAGCAGTCC
AAAGTGGCGCATACCGTACAACTGTACATGTAGTACAGTACAGTACAGTA
CAGGTACTGTACAGTACAGTACACGTACAGTACAGTACAGGTACTGTACA
GTACAGTACACGTACAGTACAGTACAGTGCACCGTAGGGTACGGCAACAG
ACGAGGACATATGGCTATGGCAGGCAACTCACGGGTACCCCTCCCCCCTT
CCGCCCCCCCTCCGCCCTGGCCTCCTCCCTCCGAGCCCGATCCGCCCCCC
CACACGCACTAGTACGAGAACACACCATTCTTAAGCGGGATCACCACCAA
TATGAGAACACTCAATATCACGCTCGTGCGATTGTACCTGTTTACGATTT
TTGGGGGGAATCATTTTGTGACAGCGAGCTCCGGGCTCCGTCCCAACAAC
CCAAGGTGGGGACCTCGCCAGAAGCCCTTCTTGGCTCGCAGGGCACAAAC
ATCAGGCAAACAAGCAACAAACAGGGAAATGCAGGGGCAACGTCACAATT
TATATGAGTCACCCCCCCACACGCATGCCTGGCAGGTGGTGGAGATGAGG
GAGTGCAACCTCCTGGAAGAGCCCGGCGAGCCCGTACTCTGGGACCCCAC
CCACCTGGAGGCGCGCCTGGAGTTCCGCCCGTTCGAGATCAAGAGCCTGC
TGGTCATGCTGGCGAGGACCTCGCTGCCGCCAGGGACGTCTTCATGATTT
AACCGCCGCTCGAGCCCC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig8:2308709..2310576- >mRNA_S-ischiensis_contig8.19579.1 ID=mRNA_S-ischiensis_contig8.19579.1|Name=mRNA_S-ischiensis_contig8.19579.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=828bp|location=Sequence derived from alignment at S-ischiensis_contig8:2308709..2310576- (Schizocladia ischiensis KU_0333)
AGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGAGAACCGAGTGCCAC
GGCCCGTTCGAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGAGAAC
CGAGTGCCACGGCCCGTTCGGGGGATGTCCGCCCTCTCGGTGGAGCCCAT
GTGCCCCACACTGGGCGTGTCGGTGTCCTGCTTCAAGCCCGCCGTCGACC
CGGGCCCCCCCGGCACCCTGTCGCTCATCCTCCGCCTCTACGAGACCTAC
GGCGGCCGCGGCCCCGCCCGCCTGTGCGTGCCGGATCTGTCCTACGCGCT
CGTGCAGGGGGATGTCCGCCCTCTCGGTGGAGCCCATGTGCCCCACACTG
GGCGTGTCGGTGTCCTGCTTCAAGCCCGCCGTCGACCCGGGCCCCCCCGG
CACCCTGTCGCTCATCCTCCGCCTCTACGAGACCTACGGCGGCCGCGGCC
CCGCCCGCCTGTGCGTGCCGGATCTGTCCTACGCGCTCGTGCAGGTGGTG
GAGATGAGGGAGTGCAACCTCCTGGAAGAGCCCGGCGAGCCCGTACTCTG
GGACCCCACCCACCTGGAGGCGCGCCTGGAGTTCCGCCCGTTCGAGATCA
AGAGCCTGCTGGTCATGCTGGCGAGGACCTCGCTGCCGCCAGGGACGTCT
TCATGATTTAAGTGGTGGAGATGAGGGAGTGCAACCTCCTGGAAGAGCCC
GGCGAGCCCGTACTCTGGGACCCCACCCACCTGGAGGCGCGCCTGGAGTT
CCGCCCGTTCGAGATCAAGAGCCTGCTGGTCATGCTGGCGAGGACCTCGC
TGCCGCCAGGGACGTCTTCATGATTTAA back to top
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