mRNA_S-ischiensis_contig8.19575.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19575.1
Unique NamemRNA_S-ischiensis_contig8.19575.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2283989..2286322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size741
Cds size375
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19575.1prot_S-ischiensis_contig8.19575.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2284355..2286322 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.5066159-UTR-S-ischiensis_contig8:2283988..22843541622817260.5066159-UTR-S-ischiensis_contig8:2283988..2284354Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2283989..2284354 -
1695740977.1350892-UTR-S-ischiensis_contig8:2283988..22843541695740977.1350892-UTR-S-ischiensis_contig8:2283988..2284354Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2283989..2284354 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.5181913-CDS-S-ischiensis_contig8:2284354..22846181622817260.5181913-CDS-S-ischiensis_contig8:2284354..2284618Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2284355..2284618 -
1695740977.1448562-CDS-S-ischiensis_contig8:2284354..22846181695740977.1448562-CDS-S-ischiensis_contig8:2284354..2284618Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2284355..2284618 -
1622817260.531993-CDS-S-ischiensis_contig8:2286211..22863221622817260.531993-CDS-S-ischiensis_contig8:2286211..2286322Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2286212..2286322 -
1695740977.15523-CDS-S-ischiensis_contig8:2286211..22863221695740977.15523-CDS-S-ischiensis_contig8:2286211..2286322Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2286212..2286322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19575.1

>prot_S-ischiensis_contig8.19575.1 ID=prot_S-ischiensis_contig8.19575.1|Name=mRNA_S-ischiensis_contig8.19575.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=125bp
GRSTPTGRARPLPRGCLWREAGGGGGVRPARPHGHLQRPTPPCGGGPPAP
AALARSSWECPSSPHTGLADPPSPWAHQTGPGGGERPRVVLAGTAPAAAA
AAGVDSGRVQVAWRGGRNCTGRSQ*
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mRNA from alignment at S-ischiensis_contig8:2283989..2286322-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19575.1 ID=mRNA_S-ischiensis_contig8.19575.1|Name=mRNA_S-ischiensis_contig8.19575.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2334bp|location=Sequence derived from alignment at S-ischiensis_contig8:2283989..2286322- (Schizocladia ischiensis KU_0333)
GGTCGTTCGACGCCGACCGGCCGAGCTCGTCCACTTCCGAGGGGATGCCT
GTGGCGAGAGGCGGGGGGCGGAGGGGGCGTTCGGCCAGCCCGGCCCCACG
GCCATCTTCAGGTGAGGGAAGGCGGGGAAGTGGAGGGGGAGGGGCCGGGG
GGGGGGGGGGCAGGGGTGGCTTGGCGAGGCGAGTTGACGAGAGCGTCTGG
ACGACAGTCTGTGCCATATTTTGTGCCTCTGCAAGTGTGTTAAAATACTT
TGAAGTACATACATCGACCCATACCGTGTCCCAACTATTGTGCGCCTAGT
GTACTGTAGTATGAGTATTAGCTAGCAGGATAATAGTAGCTGATAATGAC
GCACTGGCAACGTGCGGGCCGCGTCGCGAAAGACCTCAACAGCGGCACTA
AACTCTCTTCCACAGTACTTCCGGAAACGCTGCTAGTACTGCCGTAGTAG
TCCTACACACGTGGTAGCACTCTACTGTGTACTCTACGCTAACTGTAGAG
TACACAACTCCATGTACTGTACGCTGCGCTTGCGGGAGTAAGCGAGTGCG
TGCCTGGAAGGTGTTGTCGATCCAGCATGTTCTTGTTTCCAGAGTTGCAC
TTGTGGTTACTGTGGTTCGATACAACGCTATCAAAGCATTTTGGCTACTG
GTACTGCGAATACTACAGTAAGTAGGTCCTGCAGTACTCGTACATGTGTA
CTCTCAAGTACCTTGCAGTTCCAGCGGACGGGGCTGCAGATCCCATACTA
CTTGCAGCGCAGTATGCTTCCGGAAGTACTCGAGAAGATCGCGGCGCACG
CTCTGCACAGTGTGCTGCCGTGCATCCCGTGCACAACACATGGCGCGCTT
AACTTACTCTGCAGTGCCCGCGCTCTGCGCAATCCCGAGCGAAAGCCTGG
CCAGTCAATGCAGCTGTCGCGCACACTCGTGCAACATACTCTAAACTGCA
GTACATACTGCAGTAGTACACTGTATGCAGTGACTGTGTACTGCTGTGCT
TACACTGCGGCTTGTTTGCATGTGCAAGAGGGAGGGGGGGTAAACGCTCC
GTCTCGGTCGAGGCGCTGCAGGGGTCAAATGGTCTCGGAAGCACGGCGAG
CACAGCTTGAGTATGTGTATACGTTACGTATATATTGGGGGCACACACCA
CACACCGAAGGTTCGACGTAGGGCTGTCGGCAGTGTGCGCCAGGTGATAT
CGGAAGACAAGCCAATGGGTGCTATACGTTGGGAGATGCTGCCTTGTAAG
CCGAGTGAGGCTGAATGAATGAAGCGCCTGTGAGTGGTACCGAGCACGGT
GGTCCGCGTCGAGCACAGGAACGACCCAGAGTGTAATGCAGTGCAGTGAC
CTAAACAGAGGAATTTAGTTTCTGCCAAGCAGTCCCCGAGAATAGTTTTA
TGCAACACCGCCCTCAAGGGGTCCACTCCCCCGCCATTCCATGTGCTGTG
ATGTCATGTAGTGTGTACTCTAAACGCACTGTGGTTTCACATCATATGTA
CTACATGTTGACTGTCCTGGTCAGGACTGAGGCGCGTGGTCAATGTTCTC
GGGACTACGGTAAGCACCAAGTGAGTACTTCGAAGTTCTTCGAAGTACAT
ATATATACTATGTATATATTGACCGGCCTGGACGCAGCCATGCTCACCCC
CCCCCCCTCCCCCCCCCCCCTGGCCCACCACCGCCATGGCCGCTTGCCTC
GCAGCGTCCAACACCACCGTGCGGCGGCGGGCCCCCAGCCCCGGCGGCCT
TGGCCCGCAGCAGCTGGGAATGTCCTTCAAGTCCTCACACCGGCTTGGCG
GACCCGCCGTCGCCGTGGGCACATCAGACCGGCCCCGGTGGCGGTGAAAG
GCCGCGGGTTGTGTTGGCCGGGACAGCGCCGGCGGCGGCGGCGGCGGCGG
GGGTTGATTCGGGGCGGGTACAAGTAGCTTGGAGGGGGGGAAGGAACTGC
ACCGGTCGAAGTCAGTAGGCCTGTAGTGGTTTGTCGTTAAGCCAATATGC
TCGACTCAGGGCGAGCCGCTCCCCCGCCCCCGGCCGCCCCCCGGTGGATG
CCGGCCCGAAGCTTTGAAACGGGCCGGCAGCTTTGCGGGCCGCTGGCTAA
CTACAATAGATGGGGAAGCTGAAGGCGCGCCTCAAAACCCCACTCCAGCA
ACAGGGCTAGGGTTAGCCCGAGGACGGCGTCGAGTACTTCCGAGCACTAT
CATAGTAGTGGAGTGGTACTGTACACCTTGGCCTACTGTACGGCCGTCCT
CCAAGGGTTTAACAACTTGTAGAGAGAGCTTCGGGCCCGGGGCACCGGCG
CTGACAGATTGCGGCCCCTGTCGGGCGGGTGGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2283989..2286322-

>mRNA_S-ischiensis_contig8.19575.1 ID=mRNA_S-ischiensis_contig8.19575.1|Name=mRNA_S-ischiensis_contig8.19575.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=750bp|location=Sequence derived from alignment at S-ischiensis_contig8:2283989..2286322- (Schizocladia ischiensis KU_0333)
GGTCGTTCGACGCCGACCGGCCGAGCTCGTCCACTTCCGAGGGGATGCCT
GTGGCGAGAGGCGGGGGGCGGAGGGGGCGTTCGGCCAGCCCGGCCCCACG
GCCATCTTCAGGGTCGTTCGACGCCGACCGGCCGAGCTCGTCCACTTCCG
AGGGGATGCCTGTGGCGAGAGGCGGGGGGCGGAGGGGGCGTTCGGCCAGC
CCGGCCCCACGGCCATCTTCAGCGTCCAACACCACCGTGCGGCGGCGGGC
CCCCAGCCCCGGCGGCCTTGGCCCGCAGCAGCTGGGAATGTCCTTCAAGT
CCTCACACCGGCTTGGCGGACCCGCCGTCGCCGTGGGCACATCAGACCGG
CCCCGGTGGCGGTGAAAGGCCGCGGGTTGTGTTGGCCGGGACAGCGCCGG
CGGCGGCGGCGGCGGCGGGGGTTGATTCGGGGCGGGTACAAGTAGCTTGG
AGGGGGGGAAGGAACTGCACCGGTCGAAGTCAGTAGCGTCCAACACCACC
GTGCGGCGGCGGGCCCCCAGCCCCGGCGGCCTTGGCCCGCAGCAGCTGGG
AATGTCCTTCAAGTCCTCACACCGGCTTGGCGGACCCGCCGTCGCCGTGG
GCACATCAGACCGGCCCCGGTGGCGGTGAAAGGCCGCGGGTTGTGTTGGC
CGGGACAGCGCCGGCGGCGGCGGCGGCGGCGGGGGTTGATTCGGGGCGGG
TACAAGTAGCTTGGAGGGGGGGAAGGAACTGCACCGGTCGAAGTCAGTAG
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