mRNA_S-ischiensis_contig8.19574.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19574.1
Unique NamemRNA_S-ischiensis_contig8.19574.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2283249..2284000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size753
Cds size675
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.52632-UTR-S-ischiensis_contig8:2283248..22833251622817267.52632-UTR-S-ischiensis_contig8:2283248..2283325Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2283249..2283325 +
1695740981.4900687-UTR-S-ischiensis_contig8:2283248..22833251695740981.4900687-UTR-S-ischiensis_contig8:2283248..2283325Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2283249..2283325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.5390668-CDS-S-ischiensis_contig8:2283325..22840001622817267.5390668-CDS-S-ischiensis_contig8:2283325..2284000Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2283326..2284000 +
1695740981.5019352-CDS-S-ischiensis_contig8:2283325..22840001695740981.5019352-CDS-S-ischiensis_contig8:2283325..2284000Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2283326..2284000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19574.1prot_S-ischiensis_contig8.19574.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2283326..2284000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19574.1

>prot_S-ischiensis_contig8.19574.1 ID=prot_S-ischiensis_contig8.19574.1|Name=mRNA_S-ischiensis_contig8.19574.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=225bp
MHSRTASVSVPHVCSIKKTDVLSLTNYSTYWQRHGCQQTMPFPRRHLAGA
FCACLHTSAPPPPTGGRDSVQRHNGHHDQLQSRYAAGTCVHGHCSAPSAR
RLCHIDSVASSDHSRRLLLSYSCMWRPPWRRSEGVRPPWGRCGPGRTAKA
RAVQAAARPVEQAHRTNVLTATWHFAQYFQAVLVRVLLRRLVKERVLSPR
PRLWPRQVLRPTAPMAPGRGPTHPP
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mRNA from alignment at S-ischiensis_contig8:2283249..2284000+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19574.1 ID=mRNA_S-ischiensis_contig8.19574.1|Name=mRNA_S-ischiensis_contig8.19574.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=752bp|location=Sequence derived from alignment at S-ischiensis_contig8:2283249..2284000+ (Schizocladia ischiensis KU_0333)
AGCAGCCTTCAAGAAATGCGCTCCTTAAAAAGCCGTAATTGCTGCCGTGC
CAAGATGCACCTACCCTAGTGCAGAGCATGCACTCACGTACTGCTTCTGT
AAGTGTTCCACATGTATGTAGTATAAAAAAAACTGACGTACTCAGTCTCA
CTAACTACAGTACCTACTGGCAACGCCACGGCTGCCAGCAAACGATGCCG
TTTCCGCGGCGGCATTTGGCAGGCGCTTTCTGTGCCTGCTTGCACACAAG
TGCACCACCCCCCCCCACCGGGGGGAGGGACAGTGTCCAAAGGCACAATG
GCCATCACGACCAACTGCAATCGCGATATGCCGCCGGCACATGCGTGCAC
GGTCACTGCAGCGCACCGTCGGCACGGCGGTTGTGCCACATTGATTCGGT
CGCGTCGAGTGACCACTCAAGACGTCTCCTGCTGAGCTACTCGTGTATGT
GGCGGCCACCCTGGCGGCGTTCGGAGGGCGTCCGCCCGCCATGGGGCCGC
TGCGGCCCGGGCCGCACGGCAAAGGCGCGGGCAGTTCAGGCTGCGGCCCG
GCCCGTGGAGCAAGCACACCGCACGAACGTCCTTACTGCTACTTGGCACT
TTGCTCAGTACTTCCAAGCAGTTCTTGTACGAGTACTCCTTCGTCGCCTT
GTAAAGGAACGGGTCCTGTCCCCCCGGCCCCGACTCTGGCCCCGGCAAGT
CCTCCGGCCCACTGCACCCATGGCGCCGGGCCGCGGCCCCACCCACCCGC
CC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2283249..2284000+

>mRNA_S-ischiensis_contig8.19574.1 ID=mRNA_S-ischiensis_contig8.19574.1|Name=mRNA_S-ischiensis_contig8.19574.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1350bp|location=Sequence derived from alignment at S-ischiensis_contig8:2283249..2284000+ (Schizocladia ischiensis KU_0333)
ATGCACTCACGTACTGCTTCTGTAAGTGTTCCACATGTATGTAGTATAAA
AAAAACTGACGTACTCAGTCTCACTAACTACAGTACCTACTGGCAACGCC
ACGGCTGCCAGCAAACGATGCCGTTTCCGCGGCGGCATTTGGCAGGCGCT
TTCTGTGCCTGCTTGCACACAAGTGCACCACCCCCCCCCACCGGGGGGAG
GGACAGTGTCCAAAGGCACAATGGCCATCACGACCAACTGCAATCGCGAT
ATGCCGCCGGCACATGCGTGCACGGTCACTGCAGCGCACCGTCGGCACGG
CGGTTGTGCCACATTGATTCGGTCGCGTCGAGTGACCACTCAAGACGTCT
CCTGCTGAGCTACTCGTGTATGTGGCGGCCACCCTGGCGGCGTTCGGAGG
GCGTCCGCCCGCCATGGGGCCGCTGCGGCCCGGGCCGCACGGCAAAGGCG
CGGGCAGTTCAGGCTGCGGCCCGGCCCGTGGAGCAAGCACACCGCACGAA
CGTCCTTACTGCTACTTGGCACTTTGCTCAGTACTTCCAAGCAGTTCTTG
TACGAGTACTCCTTCGTCGCCTTGTAAAGGAACGGGTCCTGTCCCCCCGG
CCCCGACTCTGGCCCCGGCAAGTCCTCCGGCCCACTGCACCCATGGCGCC
GGGCCGCGGCCCCACCCACCCGCCCATGCACTCACGTACTGCTTCTGTAA
GTGTTCCACATGTATGTAGTATAAAAAAAACTGACGTACTCAGTCTCACT
AACTACAGTACCTACTGGCAACGCCACGGCTGCCAGCAAACGATGCCGTT
TCCGCGGCGGCATTTGGCAGGCGCTTTCTGTGCCTGCTTGCACACAAGTG
CACCACCCCCCCCCACCGGGGGGAGGGACAGTGTCCAAAGGCACAATGGC
CATCACGACCAACTGCAATCGCGATATGCCGCCGGCACATGCGTGCACGG
TCACTGCAGCGCACCGTCGGCACGGCGGTTGTGCCACATTGATTCGGTCG
CGTCGAGTGACCACTCAAGACGTCTCCTGCTGAGCTACTCGTGTATGTGG
CGGCCACCCTGGCGGCGTTCGGAGGGCGTCCGCCCGCCATGGGGCCGCTG
CGGCCCGGGCCGCACGGCAAAGGCGCGGGCAGTTCAGGCTGCGGCCCGGC
CCGTGGAGCAAGCACACCGCACGAACGTCCTTACTGCTACTTGGCACTTT
GCTCAGTACTTCCAAGCAGTTCTTGTACGAGTACTCCTTCGTCGCCTTGT
AAAGGAACGGGTCCTGTCCCCCCGGCCCCGACTCTGGCCCCGGCAAGTCC
TCCGGCCCACTGCACCCATGGCGCCGGGCCGCGGCCCCACCCACCCGCCC
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