mRNA_S-ischiensis_contig8.19572.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19572.1 vs. uniprot
Match: A0A6H5KVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS6_9PHAE) HSP 1 Score: 171 bits (432), Expect = 2.360e-41 Identity = 182/631 (28.84%), Postives = 240/631 (38.03%), Query Frame = 3
Query: 141 LSTNDLPYVDGRALVKVFLLEGPFPWNAPDEVTAAAGPMWMSYALAHAGIGFLVEESNEHHVVEYHAQNYLGAFLPVLPPAXXXXXXXXXXXXXXXXXXXXXXXG-----------------------------------------------------------------NGTDPGNDTSPSWIGGVDVPVPLFDVPG----------------GGDGTGXXXXXXXXXXXXV-----------GSDNSTMWWDNTAALHYSTGFDPGRWTSASYVAKITGVLYNDVAGWAPTFLESNGVYKPMSACQGKGDT-----LAAHNSSSSYDFAWAVFARLASNGLDFSEEVVLPPRRTAFCLFADDTDNDAFHTNHVNVAAXXXXXXXXXXXXXXXXXXXXXXXQTRWGSRVREWGRGPGDGHNRHFQAPGPSGQWAEMDVASVGASVVPASAEVESFFRNASACITQKAAAAAAGNGT-----------------GEGAEDVLNGVAACLGDEAFGYLYLNDSAYYRLPLAST---------------------------------GTKAGMVRVAQAMPQRPVSPAKSSDT--VVSWVIGSLVAVAIVAGAAVAYFKVRRSMGSTTGAVGG 1586
+ +N + V+ A+VKVFLLEGPFPWN P + AG W S+AL HA +GFLVEES HVVE + +Y+G+FLP +PP XXXXXXXXXXXX NGT D GG++ ++D G GG G G XXXXX G+ + + W+N A + S+GFD RW SA+Y+AKITG+LYND+AGW+ + E N ++P+SAC G D A S+ SYDF WA F RLA NG+ F +EVV+ P+RT CLF + DA H DG+ E+ ++R+ C+ AAAAA+GN + GEG ++ G+ CL + +LY N SAY RLPL T G A +VR + A+P RP P D +V +G VAG Y RR + G+ GG
Sbjct: 1 MDSNKIDVVENGAIVKVFLLEGPFPWNTPTAILDGAGNFWESFALTHAALGFLVEESETRHVVELYGSDYIGSFLPDVPPPPXXXXXXXXXXXXHVTPAPALTHAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQATASPASXXXXXXXXXXXXXXNGTAAPADGG----GGLEEGWAVYDKGGYAEEARRGGGXXXXXXGGGGVGWVEHIGEXXXXXXXXXXRRGLENGGNGTTPVAWNNDAVVRVSSGFDEKRWISANYIAKITGLLYNDIAGWSSIYREKNPSFQPLSACGGSSDRGGDGDFAHRGSADSYDFVWAAFDRLAKNGVIFDQEVVIKPKRTVMCLFPEG-GVDAAELVHA-------------------------------------------DGNE-----------------------------EIAEYYRDTGDCVRSLAAAAASGNSSYLGPACPSNGGGGDGWAGEGGVSLMLGLGDCLAGQENAFLYHNSSAYLRLPLNVTSVAEXXXXXXXXXXXXXXXXXXMRKEHGSGHVGGMTARLVRYSPALPPRPEQPPGGPDRAYIVYLAVGLAALGLAVAGLRALYRWRRREKLAAYGSEGG 554
BLAST of mRNA_S-ischiensis_contig8.19572.1 vs. uniprot
Match: D8LSH7_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH7_ECTSI) HSP 1 Score: 144 bits (364), Expect = 5.630e-33 Identity = 144/534 (26.97%), Postives = 198/534 (37.08%), Query Frame = 3
Query: 141 LSTNDLPYVDGRALVKVFLLEGPFPWNAPDEVTAAAGPMWMSYALAHAGIGFLVEESNEHHVVEYHAQNYLGAFLPVLPPAXXXXXXXXXXXXXXXXXXXXXXXGNGTDPGNDTSPSWIGGVDVPVPLFDVP-----GGGDGTGXXXXXXXXXXXXVGSDNSTMWWDNTAALHYSTGFDPGRWTSASYVAKITGVLYNDVAGWAPTFLESNGVYKPMSACQGKGDT-----LAAHNSSSSYDFAWAVFARLASNGLDFSEEVVLPPRRTAFCLFADDTDNDAFHTNHVNVAAXXXXXXXXXXXXXXXXXXXXXXXQTRWGSRVREWGRGPGDGHNRHFQAPGPSGQWAEMDVASVGASVVPASAEVESFFRNASACITQKAAAAAAGNG-TGEGAEDVLNGVAACLGDEAFGYLYLNDSAYYRLPLAST----------------------------------GTKAGMVRVAQAMPQRPVSPAKSSDTV-VSWVIGSLVAVAIVAGAAVAYFKVRR-----SMGSTTGAVGGG 1589
+ +N + V+ A+VKVFLLEGPFPWN P + AG W S+AL HA +GFLVEES W+ G+ G GDG G+ + + W+N A + S+GFD RW SA+Y+AKITG+LYND+ GW+ T+ E ++P+SAC G D A S+ SYDF WA F RL EEVV+ P+RT CLF + DA H + + E+ R D S+ A+A S + + AC + G+G GEG ++ G+ CL + +LY N SAY RLPL T G A +VR + A+P RP P D + ++ L AV + A ++ RR + GS G+V GG
Sbjct: 1 MDSNQIDVVENGAIVKVFLLEGPFPWNTPTAILDGAGNFWESFALTHAALGFLVEESETR---------------------------------------------------------WVEGIGEEXXXXXXXXXXRRGLGDG---------------GNGTTPVTWNNDAVVRVSSGFDEKRWISANYIAKITGLLYNDITGWSSTYREKKPSFQPLSACGGSNDRGGDGDFAHRGSADSYDFVWAAFDRLG-------EEVVIKPKRTVMCLFPEG-GVDAAELVHADG-----------------------------NEEIAEYYR----------------------DTGECVRSLAAAAASGNSSY-SGPACPSN----GGGGDGWAGEGGVSLMLGLGDCLAGQENAFLYHNSSAYLRLPLNVTSVAEEAEXXXXXXXXXXXXXXXXXXXQHGSGHVGGMTARLVRYSPALPPRPEQPPGGPDRAYIVYLAVGLAAVGLAVAGLRALYRWRRREKLAAYGSEGGSVHGG 398 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19572.1 >prot_S-ischiensis_contig8.19572.1 ID=prot_S-ischiensis_contig8.19572.1|Name=mRNA_S-ischiensis_contig8.19572.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=576bp MQEPRVEPLPLSTNDLPYVDGRALVKVFLLEGPFPWNAPDEVTAAAGPMWback to top mRNA from alignment at S-ischiensis_contig8:2267328..2275941- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19572.1 ID=mRNA_S-ischiensis_contig8.19572.1|Name=mRNA_S-ischiensis_contig8.19572.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8614bp|location=Sequence derived from alignment at S-ischiensis_contig8:2267328..2275941- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:2267328..2275941- >mRNA_S-ischiensis_contig8.19572.1 ID=mRNA_S-ischiensis_contig8.19572.1|Name=mRNA_S-ischiensis_contig8.19572.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3456bp|location=Sequence derived from alignment at S-ischiensis_contig8:2267328..2275941- (Schizocladia ischiensis KU_0333)back to top |