mRNA_S-ischiensis_contig8.19562.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19562.1
Unique NamemRNA_S-ischiensis_contig8.19562.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2209984..2212473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size710
Cds size708
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19562.1prot_S-ischiensis_contig8.19562.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2209984..2212471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817289.1395993-CDS-S-ischiensis_contig8:2209983..22101031622817289.1395993-CDS-S-ischiensis_contig8:2209983..2210103Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2209984..2210103 +
1695740998.9046514-CDS-S-ischiensis_contig8:2209983..22101031695740998.9046514-CDS-S-ischiensis_contig8:2209983..2210103Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2209984..2210103 +
1622817289.1503806-CDS-S-ischiensis_contig8:2210670..22107831622817289.1503806-CDS-S-ischiensis_contig8:2210670..2210783Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2210671..2210783 +
1695740998.914443-CDS-S-ischiensis_contig8:2210670..22107831695740998.914443-CDS-S-ischiensis_contig8:2210670..2210783Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2210671..2210783 +
1622817289.16167-CDS-S-ischiensis_contig8:2211235..22114991622817289.16167-CDS-S-ischiensis_contig8:2211235..2211499Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2211236..2211499 +
1695740998.9269478-CDS-S-ischiensis_contig8:2211235..22114991695740998.9269478-CDS-S-ischiensis_contig8:2211235..2211499Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2211236..2211499 +
1622817289.1730459-CDS-S-ischiensis_contig8:2212260..22124711622817289.1730459-CDS-S-ischiensis_contig8:2212260..2212471Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2212261..2212471 +
1695740998.9361644-CDS-S-ischiensis_contig8:2212260..22124711695740998.9361644-CDS-S-ischiensis_contig8:2212260..2212471Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2212261..2212471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19562.1

>prot_S-ischiensis_contig8.19562.1 ID=prot_S-ischiensis_contig8.19562.1|Name=mRNA_S-ischiensis_contig8.19562.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=236bp
VKQPRPERVLRRIQREVARLARHGRMGKHPLLGLFDAMDRDGSGSLTRQQ
LHRGLEELGFHIRPGEARPVLDRFDRRGDGRITYENFARTLEEQTQEQAD
YSGGDDSHGGFGGQGQEDEEEEEEEEEDLRGRLREVVERAVTRGVDYRRV
FEEADGDFSGTVDAAGLREAMRALRSPLSDADLRQLQQRFPATASDGGGG
GSREGSRGRGSRSRSPGAGGGVRYLEMIHWALPHRA
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mRNA from alignment at S-ischiensis_contig8:2209984..2212473+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19562.1 ID=mRNA_S-ischiensis_contig8.19562.1|Name=mRNA_S-ischiensis_contig8.19562.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2490bp|location=Sequence derived from alignment at S-ischiensis_contig8:2209984..2212473+ (Schizocladia ischiensis KU_0333)
GTAAAACAACCACGGCCAGAGCGTGTGCTGCGGCGCATCCAGAGAGAAGT
GGCCCGGCTGGCCAGGCACGGGCGCATGGGGAAACATCCGCTGCTCGGCT
TGTTTGACGCCATGGACCGGGTGAGTGGGTTGGGGTGGAGGTCGTGTGGC
GGCAGTAGTGGTGGTAGTGGTGGTGGTGGCGGCGGCAGTGGTGGTGGTGG
TTGGTGGCGGCAGTGACGGTGGTGGTGGTGGTGGTGGTGGTGGCAGTTGG
TTGCGGCAGTGACGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTG
GTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTGGTGGTGGTGATGGA
TGTCGTTGGTGACGGCAGTGATAGTGGCGGTGGTGGTGGTGGTGGTGGTG
GTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGCGGTGGCGGTGATGGTGGT
TGCACTCCGATGCACAGCAAGGCCTATGTCAACCACGCCTGCGTCATGAG
ATTCATTGGATTTTGCGGGCCGAGTCCGATGAACCATCACTTCGAGGCAG
CAACTTAAATTGACAGCAAACACTACTTCGTATAGTCCAACGTCACCAGG
ATGGGAGCGTACGAGTATGTACTGCAGTGACACCTCTTCTTTCCCACTCG
CTTGTTTATCTCCTTGCACAAAATCCGACATGGCCAGGATGGGAGCGGGA
GCCTGACTCGACAACAGTTGCACCGTGGGCTGGAGGAGCTAGGGTTTCAC
ATCAGGCCCGGGGAGGCCAGGCCCGTGCTGGACCGCTTTGACCGCCGCGG
GTGAGAGGGAGAGGGAGGGGGGAGAGGGGAGGGAGGAAGGGGGGAGGGAG
GGGGAAGGGGGGACGGGGAAGGGGGAGAGAAAGGGGGGCGGGGGAAAGAG
GGGGGGAAGGGGGGAGAGGAGGGAGGGGGAGAGGGAGGGTGTGTGTGTGA
GAGAGAGGGGGGAGAGGGGGCGAGGAGAAGTTAGAGAGAGGGgaGGGGGG
GTTCTTTTTGCGTGTTGTGTACTCACGTGTTGCTCGCCATAGCGTAAAAC
CGTTTGACTGGCCGCGCATCCCACACGGGAGATCCTGTGGGGGAAGCGTG
AATCTCCTCAAACACGACAAACTTACCTTACCCCCCCCCCCGCCTTGCCT
GCCCCAACCCCCTGCGCACTCTCCCCGTCCGCTGGCCCTGTTTCGTCTTG
CCTTCCCCCCCTCCCTCCCTCCCTCCTGCCTCCTCCCCTTTCCCTCCTCC
AGCGACGGCCGGATCACCTACGAGAACTTTGCGCGCACCCTGGAGGAGCA
GACCCAGGAGCAGGCGGACTACAGCGGTGGTGATGACTCGCACGGCGGTT
TCGGCGGCCAGGGGCAAGAGGATGAGGAGGAGGAGGAGGAAGAGGAGGAG
GACCTGCGTGGACGCCTGCGGGAGGTGGTGGAGCGAGCGGTGACGCGGGG
GGTGGACTACCGACGGGTGTTCGAGGAGGCCGACGGCGACTTCAGCGGCA
CCGTGGACGCGGCCGGGTGAGGAGACACCGGATAAGGAGGGAGGGAGGAA
CGGGGGAGGTAGAGGTAGAGAAAGGAAGGAAACAAGTGGGGCAGAGGAGG
GGGGGGGGGCAGGAAAAATGAAACAGAGGGGAgggggGGGGGAGGGAGGG
GGAGAAAGACGGAGGGAGAGAGGGAGGGAGGGCGGGGGGGGAAGGGGAAC
GGGGGAGGACAAGGAGGGGGGGAGGGAGGAGGGGGCCGGGGAGAGGAAGG
AGTGGGGGAGGGGAGGGCGGCGGGTTGCGGGAAGGGGGGAGGTGCGGGGG
GGATGCGGGAAATAAAGCCGATCGTTTTGTTGTTCGCTCCTGTCCTGGCC
AACATACTCCATTGCCATTTTCTCCGAGGGAGGGACGCACAGCCGGAGGC
ACAGAACGGAAGCTCAATGCCCGGTGCCACTGCAGTTGTAGTATACCCCT
CCGGAGCACTGGGTAGATGGTGCGGCCCCTTCCCCTCCTCCCCTGCACGC
CCTCACAGGGGGCTCCCTCTGGTCTGACCTCTGCTCGTCCCACCTGCCCC
CACACCAACTCCTCCCCCCCACCCCACCCTCCCCCGCCCGTTCCTCCTCC
TCCTGCCCCTCCTCCTGCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCGCCTCCTCCTCCCCCCGCCCCACCCTCCCTCTGC
TCTCCTCGCGCCCCTTCCACCCTCCCCCGCCTGCCCTGCCCGCCCTCCCC
CCCCCAACCCCCCACCCCACCCCACAGCCTTCGCGAGGCAATGCGGGCCC
TTCGAAGCCCGCTCTCTGACGCCGACCTGCGCCAACTGCAGCAGCGCTTC
CCCGCAACCGCCTCTGATGGTGGCGGTGGCGGCAGCCGAGAGGGGAGTCG
AGGCCGCGGCAGCCGCAGCCGCAGCCCAGGGGCCGGGGGGGGCGTCCGAT
ACCTGGAGATGATACACTGGGCGCTGCCCCACCGTGCCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2209984..2212473+

>mRNA_S-ischiensis_contig8.19562.1 ID=mRNA_S-ischiensis_contig8.19562.1|Name=mRNA_S-ischiensis_contig8.19562.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1416bp|location=Sequence derived from alignment at S-ischiensis_contig8:2209984..2212473+ (Schizocladia ischiensis KU_0333)
GTAAAACAACCACGGCCAGAGCGTGTGCTGCGGCGCATCCAGAGAGAAGT
GGCCCGGCTGGCCAGGCACGGGCGCATGGGGAAACATCCGCTGCTCGGCT
TGTTTGACGCCATGGACCGGGTAAAACAACCACGGCCAGAGCGTGTGCTG
CGGCGCATCCAGAGAGAAGTGGCCCGGCTGGCCAGGCACGGGCGCATGGG
GAAACATCCGCTGCTCGGCTTGTTTGACGCCATGGACCGGGATGGGAGCG
GGAGCCTGACTCGACAACAGTTGCACCGTGGGCTGGAGGAGCTAGGGTTT
CACATCAGGCCCGGGGAGGCCAGGCCCGTGCTGGACCGCTTTGACCGCCG
CGGGATGGGAGCGGGAGCCTGACTCGACAACAGTTGCACCGTGGGCTGGA
GGAGCTAGGGTTTCACATCAGGCCCGGGGAGGCCAGGCCCGTGCTGGACC
GCTTTGACCGCCGCGGCGACGGCCGGATCACCTACGAGAACTTTGCGCGC
ACCCTGGAGGAGCAGACCCAGGAGCAGGCGGACTACAGCGGTGGTGATGA
CTCGCACGGCGGTTTCGGCGGCCAGGGGCAAGAGGATGAGGAGGAGGAGG
AGGAAGAGGAGGAGGACCTGCGTGGACGCCTGCGGGAGGTGGTGGAGCGA
GCGGTGACGCGGGGGGTGGACTACCGACGGGTGTTCGAGGAGGCCGACGG
CGACTTCAGCGGCACCGTGGACGCGGCCGGCGACGGCCGGATCACCTACG
AGAACTTTGCGCGCACCCTGGAGGAGCAGACCCAGGAGCAGGCGGACTAC
AGCGGTGGTGATGACTCGCACGGCGGTTTCGGCGGCCAGGGGCAAGAGGA
TGAGGAGGAGGAGGAGGAAGAGGAGGAGGACCTGCGTGGACGCCTGCGGG
AGGTGGTGGAGCGAGCGGTGACGCGGGGGGTGGACTACCGACGGGTGTTC
GAGGAGGCCGACGGCGACTTCAGCGGCACCGTGGACGCGGCCGGCCTTCG
CGAGGCAATGCGGGCCCTTCGAAGCCCGCTCTCTGACGCCGACCTGCGCC
AACTGCAGCAGCGCTTCCCCGCAACCGCCTCTGATGGTGGCGGTGGCGGC
AGCCGAGAGGGGAGTCGAGGCCGCGGCAGCCGCAGCCGCAGCCCAGGGGC
CGGGGGGGGCGTCCGATACCTGGAGATGATACACTGGGCGCTGCCCCACC
GTGCCCCTTCGCGAGGCAATGCGGGCCCTTCGAAGCCCGCTCTCTGACGC
CGACCTGCGCCAACTGCAGCAGCGCTTCCCCGCAACCGCCTCTGATGGTG
GCGGTGGCGGCAGCCGAGAGGGGAGTCGAGGCCGCGGCAGCCGCAGCCGC
AGCCCAGGGGCCGGGGGGGGCGTCCGATACCTGGAGATGATACACTGGGC
GCTGCCCCACCGTGCC
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