mRNA_S-ischiensis_contig8.19560.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19560.1
Unique NamemRNA_S-ischiensis_contig8.19560.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2205555..2206314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-01_010840.1
Exons2
Model size261
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19560.1prot_S-ischiensis_contig8.19560.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2205567..2206314 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817289.027488-UTR-S-ischiensis_contig8:2205554..22055661622817289.027488-UTR-S-ischiensis_contig8:2205554..2205566Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2205555..2205566 +
1695740998.8101773-UTR-S-ischiensis_contig8:2205554..22055661695740998.8101773-UTR-S-ischiensis_contig8:2205554..2205566Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2205555..2205566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817289.0392954-CDS-S-ischiensis_contig8:2205566..22056191622817289.0392954-CDS-S-ischiensis_contig8:2205566..2205619Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2205567..2205619 +
1695740998.8192883-CDS-S-ischiensis_contig8:2205566..22056191695740998.8192883-CDS-S-ischiensis_contig8:2205566..2205619Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2205567..2205619 +
1622817289.0499098-CDS-S-ischiensis_contig8:2206118..22063141622817289.0499098-CDS-S-ischiensis_contig8:2206118..2206314Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2206119..2206314 +
1695740998.8286617-CDS-S-ischiensis_contig8:2206118..22063141695740998.8286617-CDS-S-ischiensis_contig8:2206118..2206314Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2206119..2206314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19560.1

>prot_S-ischiensis_contig8.19560.1 ID=prot_S-ischiensis_contig8.19560.1|Name=mRNA_S-ischiensis_contig8.19560.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=83bp
MDYFDESKGGDGSSINYRAFVSFCEPRPLEASPAVEKLRKAALHPGAWDI
FTRADASGSGALSRADFLRCLRESGFPVLPPNQ
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mRNA from alignment at S-ischiensis_contig8:2205555..2206314+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19560.1 ID=mRNA_S-ischiensis_contig8.19560.1|Name=mRNA_S-ischiensis_contig8.19560.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=760bp|location=Sequence derived from alignment at S-ischiensis_contig8:2205555..2206314+ (Schizocladia ischiensis KU_0333)
CTGCGGGCGGTAATGGACTACTTTGATGAGAGCAAGGGCGGGGACGGGAG
TAGCATCAACTACAGGTGAGACGGAGGAGGGAGAGGTTGGGGAGTGCACG
CCGCGCATAGGTTGAATAGTTCGTTTTCTTTCCCGCTGCAGTGAGTGTAC
TGGGTGCTAGTACTGGGTAGCAGTTAGCGGTTAGTAGGCTACAGTAGAGT
AAGTTACAGTAATGGTGTATGCTTCCCGAGTGCTTCTTGCTGTTGGCTTT
GGCATACGTAGCCCATGCACAATGTACTTTGAAATGCGAGATGATTGTTC
TGCGAGTACTTTGAGTAGTAGTCCTCAAAGGGTCGAGCTTACCACGCGTG
CACACAAAGCACGGCGCGCGCACGCACACACGCACGCACACACACGCACG
CATGCATGCACGCACACACCCTTAGCCTCTCCCGTGCTACAAAGCCCCAT
AAGTACACCCACACACGCACGCATGCAAGCACGCACGCACGCATGCACGC
ACGCACGCACGCACGCACACACATGCACACACGCGCACACACACACACAC
ACACACACATACAGGGCCTTCGTGTCCTTCTGCGAGCCCCGCCCACTGGA
GGCGTCTCCCGCCGTGGAAAAGCTGCGCAAGGCGGCCCTGCACCCAGGGG
CCTGGGACATCTTCACAAGGGCAGACGCCTCCGGGTCCGGGGCTCTGTCC
CGGGCGGACTTCCTGAGGTGCCTTAGGGAGTCGGGCTTCCCCGTGCTGCC
GCCCAACCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2205555..2206314+

>mRNA_S-ischiensis_contig8.19560.1 ID=mRNA_S-ischiensis_contig8.19560.1|Name=mRNA_S-ischiensis_contig8.19560.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=498bp|location=Sequence derived from alignment at S-ischiensis_contig8:2205555..2206314+ (Schizocladia ischiensis KU_0333)
ATGGACTACTTTGATGAGAGCAAGGGCGGGGACGGGAGTAGCATCAACTA
CAGATGGACTACTTTGATGAGAGCAAGGGCGGGGACGGGAGTAGCATCAA
CTACAGGGCCTTCGTGTCCTTCTGCGAGCCCCGCCCACTGGAGGCGTCTC
CCGCCGTGGAAAAGCTGCGCAAGGCGGCCCTGCACCCAGGGGCCTGGGAC
ATCTTCACAAGGGCAGACGCCTCCGGGTCCGGGGCTCTGTCCCGGGCGGA
CTTCCTGAGGTGCCTTAGGGAGTCGGGCTTCCCCGTGCTGCCGCCCAACC
AGGGCCTTCGTGTCCTTCTGCGAGCCCCGCCCACTGGAGGCGTCTCCCGC
CGTGGAAAAGCTGCGCAAGGCGGCCCTGCACCCAGGGGCCTGGGACATCT
TCACAAGGGCAGACGCCTCCGGGTCCGGGGCTCTGTCCCGGGCGGACTTC
CTGAGGTGCCTTAGGGAGTCGGGCTTCCCCGTGCTGCCGCCCAACCAG
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