mRNA_S-ischiensis_contig8.19557.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19557.1
Unique NamemRNA_S-ischiensis_contig8.19557.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19557.1 vs. uniprot
Match: D8LSF7_ECTSI (C2-C2_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF7_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 5.080e-21
Identity = 46/55 (83.64%), Postives = 53/55 (96.36%), Query Frame = 1
Query:   34 MEGLSWEERYLRLRDEHTALTHKANEQDDTIRRMNTKLSQIEKSIKLKQRLDADG 198
            MEGL+WEE+YLRLRD+HT+LTHKANEQDDTIRRMNTKLSQIEKS+KLK RL+ +G
Sbjct:    1 MEGLTWEEKYLRLRDDHTSLTHKANEQDDTIRRMNTKLSQIEKSLKLKYRLENNG 55          
BLAST of mRNA_S-ischiensis_contig8.19557.1 vs. uniprot
Match: A0A836CCF4_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCF4_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.390e-18
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 1
Query:   34 MEGLSWEERYLRLRDEHTALTHKANEQDDTIRRMNTKLSQIEKSIKLKQRLDA---DGEVHHGQPRNRENEQ 240
            ME LS+EERYL LRDEH +LTHK NEQ+DTIRRMNTKL+QIEK++KLKQ+LD    D       PRNRE EQ
Sbjct:    1 MEALSYEERYLSLRDEHVSLTHKCNEQEDTIRRMNTKLAQIEKNLKLKQQLDGLGVDAVQGRSGPRNREQEQ 72          
BLAST of mRNA_S-ischiensis_contig8.19557.1 vs. uniprot
Match: A0A7R9UDG1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDG1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.850e-11
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   34 MEGLSWEERYLRLRDEHTALTHKANEQDDTIRRMNTKLSQIEKSIKLKQRLDADGEVHHGQPRNRENEQ 240
            M    WE+RY ++ ++   L  + N+Q+ TIRR+NT+L+QIE +I  KQRL+A G     QPRNRENEQ
Sbjct:    1 MSDTDWEDRYRKVLEQRNELQQRCNDQEVTIRRINTRLAQIENNIAAKQRLEASGVRPTSQPRNRENEQ 69          
BLAST of mRNA_S-ischiensis_contig8.19557.1 vs. uniprot
Match: A0A7S1TWL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWL1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.270e-10
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   34 MEGLSWEERYLRLRDEHTALTHKANEQDDTIRRMNTKLSQIEKSIKLKQRLDADGEVHHGQPRNRENEQ 240
            M    WE+RY ++ ++   L  + N+QD TIRR+NT+L+QIE +I  KQR +  G     QPRNRENEQ
Sbjct:   28 MSETDWEDRYRKVLEQRNELQRRCNDQDVTIRRINTRLAQIESNIATKQRQEGGGARAPAQPRNRENEQ 96          
BLAST of mRNA_S-ischiensis_contig8.19557.1 vs. uniprot
Match: A0A662XRS0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRS0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.120e-6
Identity = 30/65 (46.15%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 RSPPRGAGRGAMEGLS--WEERYLRLRDEHTALTHKANEQDDTIRRMNTKLSQIEKSIKLKQRLD 189
            ++ P G+    +EG++  +E++YL LRDE+TAL  K NEQ+ TI+RM TKL+ IE+++K K+++D
Sbjct:   34 KAQPGGSRTPQIEGMAGEYEDKYLLLRDENTALKKKKNEQEATIKRMFTKLAMIEETMKKKRQVD 98          
BLAST of mRNA_S-ischiensis_contig8.19557.1 vs. uniprot
Match: A0A2R5G9Z1_9STRA (Protein fantom n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9Z1_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 7.650e-6
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   28 GAMEGLSWEERYLRLRDEHTALTHKANEQDDTIRRMNTKLSQIEKSIKLKQ 180
            G  +   WEE++LRLR+EH AL  ++NEQ  T+R+M+TKL  I+K++  K+
Sbjct:   25 GPKDAAFWEEKFLRLREEHAALKRQSNEQQTTMRQMHTKLQLIDKTMAAKE 75          
BLAST of mRNA_S-ischiensis_contig8.19557.1 vs. uniprot
Match: A0A3R7MRG7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MRG7_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.330e-5
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1
Query:   49 WEERYLRLRDEHTALTHKANEQDDTIRRMNTKLSQIEKSIKLKQRLD 189
            +E++YL LRDE+TAL  K NEQ+ TI+RM TKL+ IE+S+K K++ D
Sbjct:    5 YEDKYLLLRDENTALKKKKNEQEATIKRMYTKLAIIEESLKKKRQAD 51          
BLAST of mRNA_S-ischiensis_contig8.19557.1 vs. uniprot
Match: A0A8K1FPL5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FPL5_PYTOL)

HSP 1 Score: 51.2 bits (121), Expect = 1.430e-5
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1
Query:   49 WEERYLRLRDEHTALTHKANEQDDTIRRMNTKLSQIEKSIKLKQRLD 189
            +EE+YL+LRDE+TAL  K NEQ+ TI+RM TKL+ IE+++K K+  D
Sbjct:    5 FEEKYLQLRDENTALKKKKNEQEATIKRMYTKLAMIEEAMKKKRIAD 51          
BLAST of mRNA_S-ischiensis_contig8.19557.1 vs. uniprot
Match: A0A1V9YGY3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGY3_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.670e-5
Identity = 25/46 (54.35%), Postives = 38/46 (82.61%), Query Frame = 1
Query:   46 SWEERYLRLRDEHTALTHKANEQDDTIRRMNTKLSQIEKSIKLKQR 183
            ++E++YL LR+E+ AL  K NEQ+DTI+RM TKL+ IE+++K K+R
Sbjct:    7 TYEDKYLELREENLALKRKKNEQEDTIKRMYTKLAIIEETLKRKER 52          
BLAST of mRNA_S-ischiensis_contig8.19557.1 vs. uniprot
Match: K3WS02_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS02_GLOUD)

HSP 1 Score: 49.7 bits (117), Expect = 4.740e-5
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 1
Query:   49 WEERYLRLRDEHTALTHKANEQDDTIRRMNTKLSQIEKSIKLKQRLD 189
            +EE+YL LRDE+TAL  K NEQ+ TI+RM TKL+ IE+++K K+  +
Sbjct:    5 YEEKYLSLRDENTALKKKKNEQEATIKRMYTKLAIIEEALKKKRHAE 51          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LSF7_ECTSI5.080e-2183.64C2-C2_1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CCF4_9STRA1.390e-1868.06EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A7R9UDG1_9STRA1.850e-1149.28Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1TWL1_9STRA4.270e-1047.83Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A662XRS0_9STRA1.120e-646.15Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A2R5G9Z1_9STRA7.650e-647.06Protein fantom n=1 Tax=Hondaea fermentalgiana TaxI... [more]
A0A3R7MRG7_9STRA1.330e-557.45Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A8K1FPL5_PYTOL1.430e-557.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YGY3_9STRA2.670e-554.35Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
K3WS02_GLOUD4.740e-555.32Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2187443..2187959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue4.8e-19
Seed eggNOG ortholog2880.D8LSF7
Preferred nameRPGRIP1L
KEGG koko:K16512,ko:K16550
GOsGO:0001654,GO:0001655,GO:0001664,GO:0001701,GO:0001736,GO:0001738,GO:0001754,GO:0001822,GO:0001889,GO:0002009,GO:0003002,GO:0003008,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005874,GO:0005879,GO:0005881,GO:0005886,GO:0005911,GO:0005929,GO:0005930,GO:0006935,GO:0006996,GO:0007163,GO:0007164,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008277,GO:0008283,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0015630,GO:0016020,GO:0016043,GO:0021532,GO:0021537,GO:0021549,GO:0021591,GO:0021670,GO:0021772,GO:0021915,GO:0021988,GO:0022008,GO:0022037,GO:0022038,GO:0022406,GO:0022607,GO:0022615,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030054,GO:0030154,GO:0030182,GO:0030326,GO:0030900,GO:0030902,GO:0031862,GO:0031870,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035115,GO:0035116,GO:0035136,GO:0035137,GO:0035253,GO:0035295,GO:0035869,GO:0036064,GO:0040011,GO:0042221,GO:0042330,GO:0042461,GO:0042462,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043583,GO:0043584,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045744,GO:0046530,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048592,GO:0048598,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051179,GO:0051640,GO:0051641,GO:0060039,GO:0060041,GO:0060173,GO:0060271,GO:0060322,GO:0060429,GO:0060541,GO:0061008,GO:0061351,GO:0061512,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071840,GO:0071944,GO:0072001,GO:0072359,GO:0072657,GO:0090102,GO:0090596,GO:0097014,GO:0097458,GO:0097499,GO:0097500,GO:0097711,GO:0097730,GO:0097731,GO:0097733,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1903441,GO:1904491,GO:1905515,GO:1990778
EggNOG free text desc.thromboxane A2 receptor binding
EggNOG OGs2CMYB@1,2QSQG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817288.8246162-CDS-S-ischiensis_contig8:2187442..21875731622817288.8246162-CDS-S-ischiensis_contig8:2187442..2187573Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2187443..2187573 +
1695740998.6848702-CDS-S-ischiensis_contig8:2187442..21875731695740998.6848702-CDS-S-ischiensis_contig8:2187442..2187573Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2187443..2187573 +
1622817288.8376327-CDS-S-ischiensis_contig8:2187849..21879581622817288.8376327-CDS-S-ischiensis_contig8:2187849..2187958Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2187850..2187958 +
1695740998.696241-CDS-S-ischiensis_contig8:2187849..21879581695740998.696241-CDS-S-ischiensis_contig8:2187849..2187958Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2187850..2187958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19557.1prot_S-ischiensis_contig8.19557.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2187443..2187958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19557.1

>prot_S-ischiensis_contig8.19557.1 ID=prot_S-ischiensis_contig8.19557.1|Name=mRNA_S-ischiensis_contig8.19557.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=80bp
RSPPRGAGRGAMEGLSWEERYLRLRDEHTALTHKANEQDDTIRRMNTKLS
QIEKSIKLKQRLDADGEVHHGQPRNRENEQ
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mRNA from alignment at S-ischiensis_contig8:2187443..2187959+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19557.1 ID=mRNA_S-ischiensis_contig8.19557.1|Name=mRNA_S-ischiensis_contig8.19557.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=517bp|location=Sequence derived from alignment at S-ischiensis_contig8:2187443..2187959+ (Schizocladia ischiensis KU_0333)
AGGTCGCCTCCGCGGGGGGCTGGTCGGGGGGCCATGGAGGGTCTCTCGTG GGAGGAACGGTACCTGCGGCTCAGAGATGAGCACACGGCCCTGACGCACA AGGCCAACGAGCAGGATGACACCATCCGCCGGTGAGGAGACGGAGGATAT TGAAGGGACGATGTTTTTGGATTCGCTCGCCCTGCCGTTGGCCTCGCGCG CGCTACAACTACCCCAACCCCCAGTTCACGCTCGCTCGGCCTTGATTTAT TCACCGCAAGTGCGTGGATTGCGTGCTTTCAATCCAAGCTCGGCGGCCGC CCAGGGGCTAGCTGCCGGAATGACCTGCGCGTTTGTCCCCCCACCCCCTG GATCGTGAACACAAACCGCCTTGCATCCCACCACCATCGCCTCCCACTGC CCGCCAGTATGAACACGAAGCTGTCCCAGATAGAGAAAAGCATAAAGCTG AAGCAGCGCCTAGACGCGGACGGCGAGGTGCACCATGGGCAACCTCGGAA CCGCGAGAACGAGCAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2187443..2187959+

>mRNA_S-ischiensis_contig8.19557.1 ID=mRNA_S-ischiensis_contig8.19557.1|Name=mRNA_S-ischiensis_contig8.19557.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=480bp|location=Sequence derived from alignment at S-ischiensis_contig8:2187443..2187959+ (Schizocladia ischiensis KU_0333)
AGGTCGCCTCCGCGGGGGGCTGGTCGGGGGGCCATGGAGGGTCTCTCGTG
GGAGGAACGGTACCTGCGGCTCAGAGATGAGCACACGGCCCTGACGCACA
AGGCCAACGAGCAGGATGACACCATCCGCCGAGGTCGCCTCCGCGGGGGG
CTGGTCGGGGGGCCATGGAGGGTCTCTCGTGGGAGGAACGGTACCTGCGG
CTCAGAGATGAGCACACGGCCCTGACGCACAAGGCCAACGAGCAGGATGA
CACCATCCGCCGTATGAACACGAAGCTGTCCCAGATAGAGAAAAGCATAA
AGCTGAAGCAGCGCCTAGACGCGGACGGCGAGGTGCACCATGGGCAACCT
CGGAACCGCGAGAACGAGCAGTATGAACACGAAGCTGTCCCAGATAGAGA
AAAGCATAAAGCTGAAGCAGCGCCTAGACGCGGACGGCGAGGTGCACCAT
GGGCAACCTCGGAACCGCGAGAACGAGCAG
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