mRNA_S-ischiensis_contig8.19553.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19553.1
Unique NamemRNA_S-ischiensis_contig8.19553.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19553.1 vs. uniprot
Match: D7FRA6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA6_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 6.210e-82
Identity = 129/193 (66.84%), Postives = 154/193 (79.79%), Query Frame = 1 
Query:    4 RERKERLREAMAEFAVTEGDHVTYVNVFNSFEEAGLSAEWCADNCLNYRALARAGEVRAQLLRHVKRVAPEGAAVSSCGNDIDALRRCLVSGFFSNAARLCPDGRYRTIRDSAPVAIHPSSVLARFGAPPEWVVFHEASQTSQLFIRDVSAVDPRWLTELAGHFYEFRGRPRGXXXXXXXXXXGKRRLGPQLP 582
            RER+ER+REAM EFAVTEGDH+TY+NVFNSF+E G  +EWC +NCLN+RAL RAGE+R QL R+ K+ AP G  VSSCG+D++ALRRCLV+GFF+N A+L PDGRYRT+RDS  VAIHPSSVLA FG+PPEW++F+E S+TSQLF RDVS VDPRWL ELA HFYEFRG               K+RLGP+ P
Sbjct:  532 RERRERVREAMEEFAVTEGDHITYLNVFNSFDETGNDSEWCKENCLNHRALVRAGEIRQQLSRYCKKFAPPGQHVSSCGDDVNALRRCLVAGFFANVAKLSPDGRYRTVRDSTVVAIHPSSVLAHFGSPPEWILFNEISKTSQLFARDVSVVDPRWLIELAPHFYEFRG---AGGSGGAPRLGTKKRLGPERP 721
[Close]
BLAST of mRNA_S-ischiensis_contig8.19553.1 vs. uniprot
Match: A0A835Z495_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z495_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.410e-53
Identity = 101/186 (54.30%), Postives = 128/186 (68.82%), Query Frame = 1 
Query:    7 ERKERLREAMAEFAVTEGDHVTYVNVFNSF--EEAGLSA----EWCADNCLNYRALARAGEVRAQLLRHVKRVAPEG------------AAVSSCGNDIDALRRCLVSGFFSNAARLCPDGRYRTIRDSAPVAIHPSSVLARFGAPPEWVVFHEASQTSQLFIRDVSAVDPRWLTELAGHFYEFRG 510
            E K+R R AMA FA  EGDH+TY+NV+N++  E  G S     EWCA++CL+ R+L RA E+R QL R+ +  AP                + S G+D+ A+ RCLVSGFFSNAARL  DGRYRT+R+   +  HPSSVLA+FG+PPE+VV+HE  +T+QLF RDVSAVDPRWL ELA HF+  RG
Sbjct:  488 EAKQRQRSAMAAFATLEGDHITYINVYNAYCDEADGGSVDELREWCAEHCLDARSLRRAREIRGQLERYARLHAPPDHDNDLPVSKQQLRGLPSAGSDMKAVLRCLVSGFFSNAARLSSDGRYRTVREGTVLTFHPSSVLAQFGSPPEYVVYHEVVRTTQLFARDVSAVDPRWLLELAPHFFATRG 673
[Close]
BLAST of mRNA_S-ischiensis_contig8.19553.1 vs. uniprot
Match: A0A6V1PNS9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PNS9_HETAK)

HSP 1 Score: 177 bits (448), Expect = 2.130e-51
Identity = 84/163 (51.53%), Postives = 116/163 (71.17%), Query Frame = 1 
Query:   13 KERLREAMAEFAVTEGDHVTYVNVFNSFEEAGLSAEWCADNCLNYRALARAGEVRAQLLRHVKRVAPEGAAVSSCGNDIDALRRCLVSGFFSNAARLCPDGRYRTIRDSAPVAIHPSSVLARFGAPPEWVVFHEASQTSQLFIRDVSAVDPRWLTELAGHFYE 501
            +E+L EAM +FAV EGDHVTY+NV+  +   G   EWCA+ C+N  ALA+A  +RAQL R+++ +  E  ++ SC  DI  +++ LV+GFFS AAR+ PDG+YRT+R+   V IHPSSV A+FGAP E ++FHEA  T Q+++RD +AV   WL E A HFY+
Sbjct:  138 REKLEEAMGQFAVREGDHVTYLNVYEDYAGGGGDPEWCAEYCVNRPALAKAVHIRAQLKRYLEMLCKE-KSIQSCQGDIQKIQKALVAGFFSQAARIGPDGKYRTVRNGTEVTIHPSSVFAKFGAPAEHIIFHEAVFTDQVYVRDATAVRAAWLLEAAPHFYQ 299
[Close]
BLAST of mRNA_S-ischiensis_contig8.19553.1 vs. uniprot
Match: W7TSM4_9STRA (Deah (Asp-glu-ala-his) box polypeptide 35 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSM4_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.470e-50
Identity = 84/160 (52.50%), Postives = 119/160 (74.38%), Query Frame = 1 
Query:   31 AMAEFAVTEGDHVTYVNVFNSFEEAGLSAEWCADNCLNYRALARAGEVRAQLLRHVKRVAPEGAAVSSCGNDIDALRRCLVSGFFSNAARLCPDGRYRTIRDSAPVAIHPSSVLARFGAPPEWVVFHEASQTSQLFIRDVSAVDPRWLTELAGHFYEFRG 510
            AMAE A  +GDH+T + ++  +EEAG S EWC+++ LN R+L RA E+R QL R+++R  P+G+  +SC +D +ALRRC+++GFF NAARL  DGRY T+RD  PVA+H +SVLA++GAP EW+V+++   TS+ F+RD S + P WL ELA HFY + G
Sbjct:  537 AMAELASRDGDHLTLLAIYREWEEAGRSTEWCSEHFLNPRSLTRAREIRGQLRRYLERYKPKGSVFASCVDDSEALRRCVLTGFFFNAARLKSDGRYYTVRDGHPVALHSTSVLAKYGAPAEWIVYNDVVITSEPFLRDCSRIQPLWLMELAPHFYAYGG 696
[Close]
BLAST of mRNA_S-ischiensis_contig8.19553.1 vs. uniprot
Match: A0A812UNL8_SYMMI (Dhx8 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UNL8_SYMMI)

HSP 1 Score: 172 bits (436), Expect = 4.380e-48
Identity = 79/165 (47.88%), Postives = 113/165 (68.48%), Query Frame = 1 
Query:    7 ERKERLREAMAEFAVTEGDHVTYVNVFNSFEEAGLSAEWCADNCLNYRALARAGEVRAQLLRHVKRVAPEGAAVSSCGNDIDALRRCLVSGFFSNAARLCPDGRYRTIRDSAPVAIHPSSVLARFGAPPEWVVFHEASQTSQLFIRDVSAVDPRWLTELAGHFYE 501
            E K+RL +   E +V +GDH+T +N++N +E++G S+ WC   CL  R L+RA EVR +L   +KR+  EG  +SSCG D D + + +VSG+F+N A+L   G Y T+R   PV +HP+SV+ARFG+PPEWVVFH+   T  + IR+VS + P WL ELA H+Y+
Sbjct:  310 EAKQRLLDCKGELSVAQGDHLTLLNIYNCYEQSGHSSSWCDSMCLQSRLLSRAREVRGKLRGMLKRMMLEGEVMSSCGEDNDTIMKSIVSGYFANVAQLGSGGMYWTVRGRIPVNVHPTSVIARFGSPPEWVVFHDVVHTDTILIREVSRIQPMWLIELAEHYYD 474
[Close]
BLAST of mRNA_S-ischiensis_contig8.19553.1 vs. uniprot
Match: A0A6A7GDG2_9CRUS (PremRNA splicing factor (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GDG2_9CRUS)

HSP 1 Score: 163 bits (413), Expect = 5.150e-47
Identity = 82/160 (51.25%), Postives = 112/160 (70.00%), Query Frame = 1 
Query:   31 AMAEFAVTEGDHVTYVNVFNSFEEAGLSAEWCADNCLNYRALARAGEVRAQLLRHVKRVAPEGAAVSSCGNDIDALRRCLVSGFFSNAARLCPDGRYRTIRDSAPVAIHPSSVLARFGAPPEWVVFHEASQTSQLFIRDVSAVDPRWLTELAGHFYEFRG 510
            A  +F+VTEGDH+T +NVFNSF+    +++WC D  LN RAL RA E+R  L R++KR       + +C  DI  +RRC+V GFFSNAA+L PDG Y+T+R    + IHPSSVL R  +  EWVV+H+   T++ F+RDVS ++PRWL+ELA  FYE++G
Sbjct:   89 AKRKFSVTEGDHLTLLNVFNSFQLQQHNSKWCQDRFLNIRALRRAVEIRKHLRRYLKRFK---IPIVTCAGDIVTIRRCIVCGFFSNAAQLQPDGSYKTVRGHEQLQIHPSSVLFREAS--EWVVYHDLVLTTKKFMRDVSTIEPRWLSELAPQFYEYQG 243
[Close]
BLAST of mRNA_S-ischiensis_contig8.19553.1 vs. uniprot
Match: A0A4V1IQ56_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1IQ56_9FUNG)

HSP 1 Score: 170 bits (430), Expect = 1.030e-46
Identity = 81/157 (51.59%), Postives = 112/157 (71.34%), Query Frame = 1 
Query:   28 EAMAEFAVTEGDHVTYVNVFNSFEEAGLSAEWCADNCLNYRALARAGEVRAQLLRHVKRVAPEGAAVSSCGNDIDALRRCLVSGFFSNAARLCPDGRYRTIRDSAPVAIHPSSVLARFGAPPEWVVFHEASQTSQLFIRDVSAVDPRWLTELAGHFY 498
            E   +F+V EGDH+TYVNV+NSF     S++WC  + LNY+AL RA  +R  L RH++R +PE   + SCG D   LR+C+VSGFFS AARL PDG Y TIR++  + +HP+SVL+R    P WVVFHE  +T+++F+R+++ + P WLTELA H+Y
Sbjct:  391 EERRKFSVEEGDHITYVNVYNSFLTNKKSSKWCFSHFLNYKALTRALTIRQHLTRHLRRFSPE---IESCGTDTVPLRKCIVSGFFSQAARLQPDGSYATIRENERMQVHPTSVLSR--RSPSWVVFHEVVETTKVFMRELTVISPEWLTELAPHYY 542
[Close]
BLAST of mRNA_S-ischiensis_contig8.19553.1 vs. uniprot
Match: A0A7S2W5S5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W5S5_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.750e-45
Identity = 91/176 (51.70%), Postives = 119/176 (67.61%), Query Frame = 1 
Query:    4 RERKERLREAMAEFAVTEGDHVTYVNVFNSFEEAGLS-----AEWCADNCLNYRALARAGEVRAQLLRHVKRVAPE-----GAAVSSCGNDIDALRRCLVSGFFSNAARLCPDGRYRTIRDSAPVAIHPSSVLARFGAPPEWVVFHEASQTSQLFIRDVSAVDPRWLTELAGHFYE 501
            R ++++L  AMAEFAV EGDHVT +NVF  FE+          EWCA+N LN+RAL RA EV  QL  ++ R A E        ++SCG+D  A+ +C++SGFF+N ARL PDG YRTIR S  V ++P+S+LA++GAPPE+VVF +    SQ F+R  S + PRWL ELA HFYE
Sbjct:  579 RGQRDKLDVAMAEFAVGEGDHVTLLNVFRGFEDEPEGNNQSPQEWCAENMLNHRALKRAKEVHRQLKGYLLRTARELHSGESRPLASCGDDTTAILKCIISGFFANVARLGPDGLYRTIRGSRRVQLYPNSILAKYGAPPEFVVFDQYLSLSQDFLRGCSKIHPRWLLELAPHFYE 754
[Close]
BLAST of mRNA_S-ischiensis_contig8.19553.1 vs. uniprot
Match: A0A397HL84_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397HL84_9GLOM)

HSP 1 Score: 168 bits (425), Expect = 2.780e-45
Identity = 81/164 (49.39%), Postives = 114/164 (69.51%), Query Frame = 1 
Query:   28 EAMAEFAVTEGDHVTYVNVFNSFEEAG-LSAEWCADNCLNYRALARAGEVRAQLLRHVKRVAPEGAAVSSCGNDIDALRRCLVSGFFSNAARLCPDGRYRTIRDSAPVAIHPSSVLARFGAPPEWVVFHEASQTSQLFIRDVSAVDPRWLTELAGHFYEFRGRP 516
            E   +FAV EGDH+T +NVFN+F   G  SA WC  +CLN+RAL+RA  +R  L +++ R       + SCGND   +R+CL+SG+FS AA++ PDG +RTIRD+  V IHPSS++    AP  WV+FHE  +T++ F+RD++ ++P WL ELA HFYEF+ +P
Sbjct:  522 EEKMKFAVEEGDHITLLNVFNAFVTRGNKSARWCQKHCLNFRALSRALSIRQHLRKYLLRF---DVPIESCGNDTIKIRKCLMSGYFSQAAKMMPDGSFRTIRDNVVVYIHPSSIMFTRKAP--WVIFHEVVETTKTFMRDLTVIEPSWLAELAPHFYEFKTKP 680
[Close]
BLAST of mRNA_S-ischiensis_contig8.19553.1 vs. uniprot
Match: A0A024UEE4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UEE4_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.960e-45
Identity = 78/165 (47.27%), Postives = 116/165 (70.30%), Query Frame = 1 
Query:    4 RERKERLREAMAEFAVTEGDHVTYVNVFNSFEEAGLSAEWCADNCLNYRALARAGEVRAQLLRHVKRVAPEGAAVSSCGNDIDALRRCLVSGFFSNAARLCPDGRYRTIRDSAPVAIHPSSVLARFGAPPEWVVFHEASQTSQLFIRDVSAVDPRWLTELAGHFY 498
            +ER+ +L+EA+AEFA  +GDH+TY++++N F E   S  WC ++CLN+R L RA E+R QL R+VKR A    A+ SCG+D   + +CLV+GFF+NAA+L     YRTI+D   V +HP+SVL  F   PEW+V+H++  T + ++R++S++DPRWL   A  +Y
Sbjct:  499 KERQLKLKEAVAEFAHQQGDHITYLHIYNEFLENDCSRSWCDEHCLNHRILMRATEIRKQLHRYVKRFATADNAIHSCGDDKQPVLQCLVAGFFANAAKLHGSSTYRTIKDGRIVHVHPTSVLNSFIRSPEWIVYHQSVLTDKEYVREISSIDPRWLVAAAPEYY 663
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRA6_ECTSI6.210e-8266.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z495_9STRA1.410e-5354.30P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6V1PNS9_HETAK2.130e-5151.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TSM4_9STRA1.470e-5052.50Deah (Asp-glu-ala-his) box polypeptide 35 n=2 Tax=... [more]
A0A812UNL8_SYMMI4.380e-4847.88Dhx8 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A6A7GDG2_9CRUS5.150e-4751.25PremRNA splicing factor (Fragment) n=1 Tax=Hironde... [more]
A0A4V1IQ56_9FUNG1.030e-4651.59P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2W5S5_9STRA1.750e-4551.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A397HL84_9GLOM2.780e-4549.39Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A024UEE4_9STRA2.960e-4547.27Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2129595..2133130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.1
Seed ortholog evalue3.2e-69
Seed eggNOG ortholog2880.D7FRA6
Preferred nameDHX35
KEGG koko:K13117
KEGG ModuleM00355
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030054,GO:0032991,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0055044,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0922@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size584
Cds size582
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19553.1prot_S-ischiensis_contig8.19553.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2129597..2133130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817288.132725-CDS-S-ischiensis_contig8:2129596..21299151622817288.132725-CDS-S-ischiensis_contig8:2129596..2129915Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2129597..2129915 -
1695740998.1251185-CDS-S-ischiensis_contig8:2129596..21299151695740998.1251185-CDS-S-ischiensis_contig8:2129596..2129915Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2129597..2129915 -
1622817288.144047-CDS-S-ischiensis_contig8:2131833..21319051622817288.144047-CDS-S-ischiensis_contig8:2131833..2131905Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2131834..2131905 -
1695740998.1363542-CDS-S-ischiensis_contig8:2131833..21319051695740998.1363542-CDS-S-ischiensis_contig8:2131833..2131905Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2131834..2131905 -
1622817288.1550376-CDS-S-ischiensis_contig8:2132939..21331301622817288.1550376-CDS-S-ischiensis_contig8:2132939..2133130Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2132940..2133130 -
1695740998.1475756-CDS-S-ischiensis_contig8:2132939..21331301695740998.1475756-CDS-S-ischiensis_contig8:2132939..2133130Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2132940..2133130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19553.1

>prot_S-ischiensis_contig8.19553.1 ID=prot_S-ischiensis_contig8.19553.1|Name=mRNA_S-ischiensis_contig8.19553.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=194bp
RRERKERLREAMAEFAVTEGDHVTYVNVFNSFEEAGLSAEWCADNCLNYR
ALARAGEVRAQLLRHVKRVAPEGAAVSSCGNDIDALRRCLVSGFFSNAAR
LCPDGRYRTIRDSAPVAIHPSSVLARFGAPPEWVVFHEASQTSQLFIRDV
SAVDPRWLTELAGHFYEFRGRPRGAGPGPGLGGGGKRRLGPQLP
back to top

mRNA from alignment at S-ischiensis_contig8:2129595..2133130-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19553.1 ID=mRNA_S-ischiensis_contig8.19553.1|Name=mRNA_S-ischiensis_contig8.19553.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3536bp|location=Sequence derived from alignment at S-ischiensis_contig8:2129595..2133130- (Schizocladia ischiensis KU_0333)
CGGCGGGAGCGGAAGGAGCGGCTAAGGGAGGCCATGGCGGAGTTCGCGGT
GACGGAGGGGGACCACGTGACCTATGTGAATGTGTTTAACTCCTTTGAAG
AGGCCGGGCTCTCCGCGGAGTGGTGCGCGGACAACTGCCTCAACTACAGG
GCCCTGGCGCGGGCCGGGGAGGTCCGGGCGCAGCTGCTGAGGTGCGTTTT
GTGCGCGCTGTCCACGTCCTTTTGAACTACATACTACTTCGAAGTATATA
TATATGTGCTCACATTGTGCCTGCCGTAGTCCCGCGACCATTGACCACGC
GCTTCGGCCGAGACGGAGCAGGACCCCTCCTGTTAAACTATTGTGACGGT
ATGCTCCGCCTCGAACGAGGCGCGGGGTCAATGGTCTCGGGACTACGGCA
AGCACCACATGAGTACATATATATATATATATATATATGCGAGTTCCGGG
CCCTGTCCCGACAACCTAAGGTACTGCTGTTGGCCGTTGTTGTTTCGGTT
TGAACAGTGGGGAAGGGGGAGCGGGGGAGGGGGGCCGGGCGGGCGGGCGG
GGGGGGGGGCATTGTGTGAATTTGTGTCCCGTCAGGCAGGGGGTTCATTG
TGTGCAGTGAGGCAGCATGCCTGCGGGGGTGTGTAAGTACCCCCAGCATG
TGCATTCAGTACCATGCCACACCAGTATTTCTCTTCTCTTCCCTCCTCCT
GTCCATCTCTCTCTCGGGATGCCAAGTACTGTACCTCTGTCCGCTCCTGT
TTTCTCTCCTCGTCGGTGCTGTCCGTCTGCCTGCCGTGCCTGCCGTGCCT
GTCTGCCTGTCTGCCGGTCTGTCCGCCCGTCCGTCCGTCTGTCTCTCTCT
GCCTGCCTGCCTGTCTGGCTGCCCAACCGTCTCTTTGTTTGCCAGTCTCT
CCCCCACATGCCGTCTTATCTACGCCTGCCTGTCTGGCTACCCGACCGTG
TCTTTGTTTGCCTGTCTCTCCCCCACACGCTGTCTTATCTTCTCCCCGAT
ACTGCCTCGCCGCGAGAACACTCAATCACACACGTGCGATTGTACCTCGT
TGCAATTTATATGAACCACCGCCTCGCTGCGTGCTGCCAAGCGGGCGGCA
CTTCCCCGCGGAAGCCCCTACCCCACGAGACGACGACACATGCTAAGCAC
CGTCGCTGCTTTTCATAAGTGGACGCGTTGGCTGCCCCGCCCCCCCCAAA
CCCCGCTCCCTGCTCCTTCCAACAGGCATGTCAAGAGAGTCGCCCCAGAA
GGTGCCGCGGTCTCGAGTTGCGGCAATGACATCGACGCTCTGAGGAGGTG
CGTACGCATCTTGGCCAGCCTTTGACCCCCCGGCTCACCTTGTACAGTTG
TACTTCCAAGTACTTCGAGTACTTGAAGTATCTACGAAAGGAAGGGCTTC
CGGGGGTGGGGCCCTAACTCCTGAACTCGCGTAGCTATAGGGACACTTCT
TCTTTCCCACTCGCTTGTGTGTCTTGTTGCGAAATTGTATCTACGCTGCT
CCACAAACCTCCGATTTCCTCCATCCTGTGGTTCCGAGTTTTCTCACCGT
TTTCTTCTGGCCAGCTGTTGGTCAACAGAGGCACTACTCATACTCGTACT
TTGAAGTACAGTGCTTTTCTCCACTCTCAGGGCCCACGTGGCACATCCTT
CAAAGTATTTCCGAGTGGTGCGGTACTCGAGCCAAGTGCGTTACAGTTGT
ACGAGTACATACTTGCAGCCATACTTTCGTGCTACCCGAGGGCGAACGGT
GCCTCGACTCCTCTCTCAAGCGAAGGGCACAATTCCGTGCTTGGAAGTAC
TTGGAAGTACTACACACTGTAGTACCTTTTCTACAGCTACAGCAGTGGGT
CGTCGCCCTCGCAGGGTCAAGGGCGTTGCCCGCGGGTGGCTCGGGGGGAG
TGCTTTAGACCATGGAGGAGTGTGCCGCCGGCAGGAGCAGAACCGCGCCC
ACGCCCACCTGGCAGACCCCCAGTTGCATGCGCTGGAGTCCATCACGGGG
TACTTCGAAGTACATATACGTACGGGGGCCACCTCCCGGCCGTATCCTAG
CCCTTGGAGACCCACGGTGCATGCATGTGTAATGTACATGAAAGCGCTTC
AAAGTACTTCAAAGTACTTCCTGGACTACCTCCTTCGGAAGTACTGCGTG
TCCGGGAATTTTTGGCTACGCGCTTCGCCAGGGTCCGGACGTGTGCGCAC
GGGGGCCTCGCATGAACCACACCTCGCTGCACACCACTTAAGATGAGCGA
CTGCGGACTGAGCCTTCTGGTGTTGGCCACACCATTGTGCGGTTGCGTAG
ACACGTTTTACTGGTATCAGCACGGTGCTTGGTGATTGCAGTACAGGGGT
CCCGCGCTCAGTCGGTGTTCCCTGTTCGTTAATTTCTCCGCTACAGGCAC
GCGGTGTGGTGGTTCTGCCTACTCTGTCACTGCCTGCCGCACCATCGCCT
GCCTCGCCCCCTCTGGGTGCACACACGCGCCCTGTCCCATCCCTCACCCT
CGTCTTCCCCCTACCCCCCCCTCCCCCTCCTCCTCCTCCTCCCCCTCTTC
CTCCCCGTCCACCTCCCCTTCCCCACACGACTTTCCCCTGGCGAGCTAAG
GAAGGGCTATTGTTGAGGTCTCTAGTGACGTGGCCCGCACCTCGCCCTTT
GTTGTTCCGTAAAATACTGCTGACGCTTGAGCTTCTCCAATCGATCGTCA
GTGTACTTGTACAGTGCTTTACACTACATTGCTGTACGGGGAAGAGCCTG
CTCGTTACAGTCAGTCCACTGAGGGCCGAGTGACGGCGGGGTGAGGCGAT
GGCTCTCCCCCCGCCGCGCGACAGACACGTGGTCAATGGGCATGCATGCA
GACTAGAGCTATTTACACGTACGAGTACGTGCATGTGTAGTCTACTACTC
GTACTACAGTACCCGTAGTAGCATAGTACGTATCAACCTCATTCGCGAGC
GGTACTTTAAACGTACTTCGAAGTACTGTACTTCAAAGTACTTGTAGAAC
TTACTCGAGTAGTTGCAGGAGATAGTTTGCAACACCCATCGCCCCCCTCC
CTCCCCTCCCCTCCCCTCCCCTCCCCGCCCCTCCCCGCCCCTTCCCCCCT
CCTCCCCCCCTTCCCCTCCCTCCCTCCCCCTCCCCTCCACCCCCCTCCTC
TCTCCCCGCCCTGCATCGCCCGTCGGCACTCATCCCACTGCCCCCCCTTT
CCCCGCGCCCCCCAGGTGCCTGGTCTCCGGCTTCTTCTCCAACGCCGCCC
GCCTCTGCCCCGACGGCCGCTACCGCACCATCCGCGACTCCGCCCCCGTC
GCCATACACCCGTCCTCCGTGCTGGCGCGCTTTGGCGCCCCGCCCGAGTG
GGTCGTCTTCCACGAGGCCAGCCAAACCTCCCAGCTCTTCATCCGGGACG
TCAGCGCGGTCGACCCCCGCTGGCTCACCGAGCTCGCAGGACACTTCTAC
GAGTTCCGGGGCCGGCCACGGGGCGCCGGGCCCGGGCCGGGGCTGGGGGG
CGGGGGGAAGAGGAGGTTGGGCCCACAGCTGCCGAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:2129595..2133130-

>mRNA_S-ischiensis_contig8.19553.1 ID=mRNA_S-ischiensis_contig8.19553.1|Name=mRNA_S-ischiensis_contig8.19553.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1164bp|location=Sequence derived from alignment at S-ischiensis_contig8:2129595..2133130- (Schizocladia ischiensis KU_0333)
CGGCGGGAGCGGAAGGAGCGGCTAAGGGAGGCCATGGCGGAGTTCGCGGT
GACGGAGGGGGACCACGTGACCTATGTGAATGTGTTTAACTCCTTTGAAG
AGGCCGGGCTCTCCGCGGAGTGGTGCGCGGACAACTGCCTCAACTACAGG
GCCCTGGCGCGGGCCGGGGAGGTCCGGGCGCAGCTGCTGAGCGGCGGGAG
CGGAAGGAGCGGCTAAGGGAGGCCATGGCGGAGTTCGCGGTGACGGAGGG
GGACCACGTGACCTATGTGAATGTGTTTAACTCCTTTGAAGAGGCCGGGC
TCTCCGCGGAGTGGTGCGCGGACAACTGCCTCAACTACAGGGCCCTGGCG
CGGGCCGGGGAGGTCCGGGCGCAGCTGCTGAGGCATGTCAAGAGAGTCGC
CCCAGAAGGTGCCGCGGTCTCGAGTTGCGGCAATGACATCGACGCTCTGA
GGAGGCATGTCAAGAGAGTCGCCCCAGAAGGTGCCGCGGTCTCGAGTTGC
GGCAATGACATCGACGCTCTGAGGAGGTGCCTGGTCTCCGGCTTCTTCTC
CAACGCCGCCCGCCTCTGCCCCGACGGCCGCTACCGCACCATCCGCGACT
CCGCCCCCGTCGCCATACACCCGTCCTCCGTGCTGGCGCGCTTTGGCGCC
CCGCCCGAGTGGGTCGTCTTCCACGAGGCCAGCCAAACCTCCCAGCTCTT
CATCCGGGACGTCAGCGCGGTCGACCCCCGCTGGCTCACCGAGCTCGCAG
GACACTTCTACGAGTTCCGGGGCCGGCCACGGGGCGCCGGGCCCGGGCCG
GGGCTGGGGGGCGGGGGGAAGAGGAGGTTGGGCCCACAGCTGCCGGTGCC
TGGTCTCCGGCTTCTTCTCCAACGCCGCCCGCCTCTGCCCCGACGGCCGC
TACCGCACCATCCGCGACTCCGCCCCCGTCGCCATACACCCGTCCTCCGT
GCTGGCGCGCTTTGGCGCCCCGCCCGAGTGGGTCGTCTTCCACGAGGCCA
GCCAAACCTCCCAGCTCTTCATCCGGGACGTCAGCGCGGTCGACCCCCGC
TGGCTCACCGAGCTCGCAGGACACTTCTACGAGTTCCGGGGCCGGCCACG
GGGCGCCGGGCCCGGGCCGGGGCTGGGGGGCGGGGGGAAGAGGAGGTTGG
GCCCACAGCTGCCG
back to top