mRNA_S-ischiensis_contig8.19544.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19544.1
Unique NamemRNA_S-ischiensis_contig8.19544.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2066577..2066937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size361
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.3168015-CDS-S-ischiensis_contig8:2066576..20668911622817267.3168015-CDS-S-ischiensis_contig8:2066576..2066891Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2066577..2066891 +
1695740981.4003332-CDS-S-ischiensis_contig8:2066576..20668911695740981.4003332-CDS-S-ischiensis_contig8:2066576..2066891Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2066577..2066891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.3295352-UTR-S-ischiensis_contig8:2066891..20669371622817267.3295352-UTR-S-ischiensis_contig8:2066891..2066937Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2066892..2066937 +
1695740981.4109592-UTR-S-ischiensis_contig8:2066891..20669371695740981.4109592-UTR-S-ischiensis_contig8:2066891..2066937Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2066892..2066937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19544.1prot_S-ischiensis_contig8.19544.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2066577..2066891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19544.1

>prot_S-ischiensis_contig8.19544.1 ID=prot_S-ischiensis_contig8.19544.1|Name=mRNA_S-ischiensis_contig8.19544.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=105bp
AANGAPLGDAAYALAARRVPVRPGGLQILIHHGQPGGRERTRVEVGGWRP
EDAPAGLPRPHEHELRADAGHVLRAAAAAAAAAADADAHRRRAGDGGGQR
LTPC*
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mRNA from alignment at S-ischiensis_contig8:2066577..2066937+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19544.1 ID=mRNA_S-ischiensis_contig8.19544.1|Name=mRNA_S-ischiensis_contig8.19544.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=361bp|location=Sequence derived from alignment at S-ischiensis_contig8:2066577..2066937+ (Schizocladia ischiensis KU_0333)
GCCGCCAACGGTGCCCCGCTTGGCGATGCCGCTTACGCTCTCGCCGCACG
CCGTGTGCCGGTGCGGCCGGGGGGGCTGCAGATTCTCATCCATCATGGCC
AGCCAGGAGGGCGGGAGAGGACTCGTGTCGAAGTAGGTGGGTGGCGGCCA
GAAGACGCCCCCGCTGGCCTCCCCCGTCCGCATGAACATGAGCTCCGGGC
GGATGCGGGACATGTCCTGCGGGCGGCGGCGGCGGCGGCGGCGGCAGCGG
CGGATGCGGACGCACACAGGCGGCGGGCAGGCGACGGCGGCGGTCAGAGG
CTCACGCCGTGCTAGTCGCACACTGCTTGCTGCATCGTGGGTTTGATTGA
TTTAGGGCATG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2066577..2066937+

>mRNA_S-ischiensis_contig8.19544.1 ID=mRNA_S-ischiensis_contig8.19544.1|Name=mRNA_S-ischiensis_contig8.19544.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=630bp|location=Sequence derived from alignment at S-ischiensis_contig8:2066577..2066937+ (Schizocladia ischiensis KU_0333)
GCCGCCAACGGTGCCCCGCTTGGCGATGCCGCTTACGCTCTCGCCGCACG
CCGTGTGCCGGTGCGGCCGGGGGGGCTGCAGATTCTCATCCATCATGGCC
AGCCAGGAGGGCGGGAGAGGACTCGTGTCGAAGTAGGTGGGTGGCGGCCA
GAAGACGCCCCCGCTGGCCTCCCCCGTCCGCATGAACATGAGCTCCGGGC
GGATGCGGGACATGTCCTGCGGGCGGCGGCGGCGGCGGCGGCGGCAGCGG
CGGATGCGGACGCACACAGGCGGCGGGCAGGCGACGGCGGCGGTCAGAGG
CTCACGCCGTGCTAGGCCGCCAACGGTGCCCCGCTTGGCGATGCCGCTTA
CGCTCTCGCCGCACGCCGTGTGCCGGTGCGGCCGGGGGGGCTGCAGATTC
TCATCCATCATGGCCAGCCAGGAGGGCGGGAGAGGACTCGTGTCGAAGTA
GGTGGGTGGCGGCCAGAAGACGCCCCCGCTGGCCTCCCCCGTCCGCATGA
ACATGAGCTCCGGGCGGATGCGGGACATGTCCTGCGGGCGGCGGCGGCGG
CGGCGGCGGCAGCGGCGGATGCGGACGCACACAGGCGGCGGGCAGGCGAC
GGCGGCGGTCAGAGGCTCACGCCGTGCTAG
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