mRNA_S-ischiensis_contig8.19538.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19538.1 vs. uniprot
Match: D7FMP7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP7_ECTSI) HSP 1 Score: 106 bits (265), Expect = 2.010e-19 Identity = 266/377 (70.56%), Postives = 283/377 (75.07%), Query Frame = 2
Query: 230 MPWICNEPDCKKQPYYAMPGSK-PKFCFLHKQENHVDVRNRRCQVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKANASHTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSGETAGRPLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGMDGDRVRRRCRXXXXXXXXXXXXXXXXXXXXXXXXXCGMVGSKARFCSXXXXXXXXNLKTRAFRCKFKPPE-----EGSNEPSTANKGGVCNRASRYAYPGEEASFCFRHKQDGMIDVVNPRC 1342
MPWIC EP+CKKQPYYA PG K PK+CFLHK+ H+DVRN+RC+V XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RK XXXXXXXXXXXXXXXXXXXXXXXXXXXX G RP++ XXXXXXXXXXXXXXXXXXXXXXXXX G D DR+RRRCR XXXXXXXXXXXXXXXXXCG G K RFCS NLKTRAFRCK++ + P A K CNRA RYAYPGEEA +C +HK +GM+DV+NP C
Sbjct: 1 MPWICGEPECKKQPYYAEPGQKKPKYCFLHKKPGHIDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEG-------RPMWCPDXXXXXXXXXXXXXXXXXXXXXXXXX---GYDRDRIRRRCRLHKLDDMVXXXXXXXXXXXXXXXXXCGFPGLKPRFCSEHKQDGMLNLKTRAFRCKYRGVAGLGIADDPMMPLPAGKTQPCNRACRYAYPGEEAVYCQKHKLNGMVDVINPSC 367
BLAST of mRNA_S-ischiensis_contig8.19538.1 vs. uniprot
Match: A0A6H5KYH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH5_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 1.600e-8 Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 2
Query: 1163 KTRAFRCKFKPPE-----EGSNEPSTANKGGVCNRASRYAYPGEEASFCFRHKQDGMIDVVNPRC 1342
+TRAFRCK++ + P A K CNRA RYAYPGEEA +C +HK +GM+DV+NP C
Sbjct: 384 QTRAFRCKYRGVAGLGIADDPMMPLPAGKTQPCNRACRYAYPGEEAVYCQKHKLNGMVDVINPSC 448 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19538.1 >prot_S-ischiensis_contig8.19538.1 ID=prot_S-ischiensis_contig8.19538.1|Name=mRNA_S-ischiensis_contig8.19538.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=1063bp MPWICNEPDCKKQPYYAMPGSKPKFCFLHKQENHVDVRNRRCQVDGCDVRback to top mRNA from alignment at S-ischiensis_contig8:2041256..2049254- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19538.1 ID=mRNA_S-ischiensis_contig8.19538.1|Name=mRNA_S-ischiensis_contig8.19538.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=7999bp|location=Sequence derived from alignment at S-ischiensis_contig8:2041256..2049254- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:2041256..2049254- >mRNA_S-ischiensis_contig8.19538.1 ID=mRNA_S-ischiensis_contig8.19538.1|Name=mRNA_S-ischiensis_contig8.19538.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=6378bp|location=Sequence derived from alignment at S-ischiensis_contig8:2041256..2049254- (Schizocladia ischiensis KU_0333)back to top |