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Homology
BLAST of mRNA_S-ischiensis_contig8.19537.1 vs. uniprot
Match: D7FRE9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRE9_ECTSI) HSP 1 Score: 109 bits (272), Expect = 4.290e-24 Identity = 65/150 (43.33%), Postives = 88/150 (58.67%), Query Frame = 1
Query: 100 WPPRDKMVS*RPLCSST-------SVPGA-GGALWGAVLATYRGQSVSFYATGMGLNYAFASGVFLGTEMAIRAVR-DQRDAVGFATAGCITGVVLAGPFGGPRQGAIAAVALGGLGYVGYHVHGRFESYLQSLAEERRRELEKNQAGAP 522
+P D+ +S +P + S+ GA GA++G VLATYRG SV FYA MG NYA AS F GTE IR R D+RDA+G+A AG TG+ + P GG Q +A +A+ G+GY G++ H R +YL L +E R +K + P
Sbjct: 11 FPMTDQGISSQPAATDAWTRVAQNSIIGATSGAVFGTVLATYRGHSVPFYAASMGTNYALASLAFFGTEALIRKARGDKRDALGYAGAGLTTGMAMTLPIGGRYQALVAGIAMAGVGYGGFYAHRRARAYLDELGQEELRRRDKLTSKGP 160
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-21_002680.1 |
| Exons | 3 |
| Model size | 1688 |
| Cds size | 309 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817287.4385486-UTR-S-ischiensis_contig8:2034771..2035916 | 1622817287.4385486-UTR-S-ischiensis_contig8:2034771..2035916 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 2034772..2035916 - |
| 1695740997.5948803-UTR-S-ischiensis_contig8:2034771..2035916 | 1695740997.5948803-UTR-S-ischiensis_contig8:2034771..2035916 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 2034772..2035916 - |
| 1622817287.4880102-UTR-S-ischiensis_contig8:2037130..2037364 | 1622817287.4880102-UTR-S-ischiensis_contig8:2037130..2037364 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 2037131..2037364 - |
| 1695740997.6386125-UTR-S-ischiensis_contig8:2037130..2037364 | 1695740997.6386125-UTR-S-ischiensis_contig8:2037130..2037364 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 2037131..2037364 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817287.4496176-CDS-S-ischiensis_contig8:2035916..2036086 | 1622817287.4496176-CDS-S-ischiensis_contig8:2035916..2036086 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2035917..2036086 - |
| 1695740997.606064-CDS-S-ischiensis_contig8:2035916..2036086 | 1695740997.606064-CDS-S-ischiensis_contig8:2035916..2036086 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2035917..2036086 - |
| 1622817287.463673-CDS-S-ischiensis_contig8:2036878..2036977 | 1622817287.463673-CDS-S-ischiensis_contig8:2036878..2036977 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2036879..2036977 - |
| 1695740997.6170104-CDS-S-ischiensis_contig8:2036878..2036977 | 1695740997.6170104-CDS-S-ischiensis_contig8:2036878..2036977 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2036879..2036977 - |
| 1622817287.4754348-CDS-S-ischiensis_contig8:2037090..2037130 | 1622817287.4754348-CDS-S-ischiensis_contig8:2037090..2037130 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2037091..2037130 - |
| 1695740997.629292-CDS-S-ischiensis_contig8:2037090..2037130 | 1695740997.629292-CDS-S-ischiensis_contig8:2037090..2037130 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2037091..2037130 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19537.1 >prot_S-ischiensis_contig8.19537.1 ID=prot_S-ischiensis_contig8.19537.1|Name=mRNA_S-ischiensis_contig8.19537.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=103bp
MGLNYAFASGVFLGTEMAIRAVRDQRDAVGFATAGCITGVVLAGPFGGPR
QGAIAAVALGGLGYVGYHVHGRFESYLQSLAEERRRELEKNQAGAPPRVG
RA* back to topmRNA from alignment at S-ischiensis_contig8:2034772..2037364- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig8.19537.1 ID=mRNA_S-ischiensis_contig8.19537.1|Name=mRNA_S-ischiensis_contig8.19537.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2593bp|location=Sequence derived from alignment at S-ischiensis_contig8:2034772..2037364- (Schizocladia ischiensis KU_0333)
ACGAGGCGTGAACATGGAGGAGCGATTGCAGCAGGTTGCTCGAAACTCAC
TGGCGGCTGGTGAGTGTGAAATGAAGGCCATTGAATCCCAGTCAAGCCCT
GGCCGCCTCGGGACAAGATGGTCAGTTGACGCCCCCTTTGCTCGTCCACG
TCCGTCCCAGGAGCGGGGGGAGCTCTGTGGGGCGCGGTACTGGCGACGTA
CAGGGGACAATCGGTTTCCTTCTACGCGACGGGCATGGGATTGAACTACG
CCTTCGCATCGGGTGTTTTTTTGGGTGGGTTGCGTCTTGCCCCGCGCCGC
GTTGTGCCTATCCCTGTGGTTGGCCTTGCTCTGGGCTTACGTTTGAACTC
TGCAATGAACGAAATTGGAATCGGCACTGTGTTTCAGGCACAGAGATGGC
GATCAGGGCAGTACGCGACCAGCGGGACGCTGTGGGCTTTGCCACCGCAG
GTTGCATCACGGGCGTGGTCCTGGCAGGGCCCTTTGGTGAGCGGACACGC
GCGTCAAGCCCCTCTGGTGTGATTTTGCATGGGCTGGCCGTGTGTTAGCA
TTGTCCTTTTTCGATCCCGACCATTCTGCGAATCTGAAAGCTCGAACCAG
TTGGCTTGAGCGACAGAGACCTCACACCTGATTGCCCGTGTCAACCCTCG
ACGAGTCAGCGAGGGGCCACCGTTGCGGTACCCAGTTGGGGTTGCGATCC
GTGCCCCGCTTGGATTTCTTTCAGACACATGAATCAAGCCTCAACTGGGT
CATCAGGGTGTGCCGCTGTAGATGCTTGCAACACGCATTCGGTCTCAAAC
TGTTGCAAGTCAGCTGAAATCCCTCCCGGCTCCTGTAGCACACTGAGGGC
GCGCCGGCCTGTCTGGCTATAATGAGGTACATGCAGCTGTCTGAAAGCAC
GTGGTGGCCTCCCCAGCACAGTAGTGGCAAACTACATGGTGCAGTACTCG
TACACGGTCCCTACATTGCTTTAGTAAGCCTTACTTGCCCTGCGAGAGCG
GTACCTCCTGTAATACACACTGTGTAAGTACTGCGTACGAGTACATGCGC
GCACACTACTTGCATACTGGTACTGCGTACTGGAGTAGTTCAGGCGGGCC
CCACTGGGGTGCTAGTGGGCTCAGCCTGAGTTCACGGTAAAGTTCTATTA
ACCCTTTAACCCTGGGGTCCGTATAATCATAGGGTTTTCTGTGCAAGTCC
AATTTAGTGGGGGCAAAAGGGTTAGCTGCACTCGTCCAACGCCCCTGCCG
GTTGTGCCTGCCAACATTTTCCGTCCAGGTGGACCTCGACAGGGCGCCAT
CGCCGCGGTAGCGCTTGGGGGGCTTGGCTATGTTGGGTACCACGTACACG
GCCGATTCGAATCCTACCTGCAATCTTTGGCAGAAGAGCGGAGAAGAGAA
TTGGAGAAAAATCAGGCAGGTGCCCCCCCGAGAGTTGGGCGGGCCTGACC
GCTGCCGCGGGATTTGTGCCCTCGCCGTTACGTAAGCGCACATATGTGTC
TTTGTTGTATCCGTACCATGCTGCCTTTGGATCGTGACCGACCAGTCGCC
CCGGGCCAAGTTCGATTTTCTTCTCCGTTTTTCCGGTGCATGTATTTCAT
GTAGCTCCTGTAGTCTACTTACGCGCCTTCTGCTTGCCATGTAGAGCGCT
TTATTAGCCTGAGTACTAGTAGTGACGTACTTCCGGAAGTAGGTCTTAGT
GCAGTGCTTGGAGAGGCGCAGGGTGTGCCTGGCTGTCTAAGTAGCTCACG
CCGCCCTCGGCACATGTTTCGGGCGCACCCGCACGAGGTCAGACAGAGAA
GTGGATGTACTGTACTCTGCTTCGCTTTATTAGTTGCCCCCTCCTTCACC
GTAGTGTAGTTCATGGCTGCAGCCTTGTGCTGTGCATAGCAAGCTCCTGC
TGAACGGCAGAGTGAATGAGTTGCTCCGCTCGGTGATCGAGGCGGGCGAG
CGTCCATACCTGTCCGATCGCAACACCGACTCGGACACAATTGATACATG
GATCGATTGAGCTTCCACGCCCTCGCAGCGAGTCACACCGGACTCATGCC
CCATGGACTTGGGTCCGTTAGACAAGGCCGGGGCCTCCAGTGGGCCCAGG
CTGGGGTCCTGGGCATGACTCGACTATTTTGGAAGCGAGGTACGGGCTCC
CGTGTGTGAAATTGAGTTTGCTGGTGGTGATTGACTGGGTATACTTAGTG
ATTGGCAGAGTCGGCCTTCGAGGCTTGTTGATAGATATATACTGTCTTTG
AGTGCTTAGATCGAGCTTAGGATCAGAATCGGGATCGAAGTTTCCGCCGT
TGCTACATTGATTCGGGAGCATATACAGTATGACAGTGCTTCGCAGTACT
GTAGAGGTCCAGATCGGCGTCACCTGCACTGTATCCTCCGGGGCACAAGT
GCACACACCCGGAGGGCAATGGATGGGGCCTGGCGGGGGGCCGGGGTGAT
GGCCGGAGGGATTTCACGTTTTGTCGTGACCAGGCGTTCAAGGCTGGTCC
CAGTCTTTGGCGCTGTCGCACAATAGACCTGACATCGAGGAGTCTGTGTT
TTATGTTGATCTGTCACTCACGCAACTTAGTCATGAAACGCTG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig8:2034772..2037364- >mRNA_S-ischiensis_contig8.19537.1 ID=mRNA_S-ischiensis_contig8.19537.1|Name=mRNA_S-ischiensis_contig8.19537.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=618bp|location=Sequence derived from alignment at S-ischiensis_contig8:2034772..2037364- (Schizocladia ischiensis KU_0333)
ATGGGATTGAACTACGCCTTCGCATCGGGTGTTTTTTTGGATGGGATTGA
ACTACGCCTTCGCATCGGGTGTTTTTTTGGGCACAGAGATGGCGATCAGG
GCAGTACGCGACCAGCGGGACGCTGTGGGCTTTGCCACCGCAGGTTGCAT
CACGGGCGTGGTCCTGGCAGGGCCCTTTGGCACAGAGATGGCGATCAGGG
CAGTACGCGACCAGCGGGACGCTGTGGGCTTTGCCACCGCAGGTTGCATC
ACGGGCGTGGTCCTGGCAGGGCCCTTTGGTGGACCTCGACAGGGCGCCAT
CGCCGCGGTAGCGCTTGGGGGGCTTGGCTATGTTGGGTACCACGTACACG
GCCGATTCGAATCCTACCTGCAATCTTTGGCAGAAGAGCGGAGAAGAGAA
TTGGAGAAAAATCAGGCAGGTGCCCCCCCGAGAGTTGGGCGGGCCTGAGT
GGACCTCGACAGGGCGCCATCGCCGCGGTAGCGCTTGGGGGGCTTGGCTA
TGTTGGGTACCACGTACACGGCCGATTCGAATCCTACCTGCAATCTTTGG
CAGAAGAGCGGAGAAGAGAATTGGAGAAAAATCAGGCAGGTGCCCCCCCG
AGAGTTGGGCGGGCCTGA back to top
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