mRNA_S-ischiensis_contig8.19536.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19536.1
Unique NamemRNA_S-ischiensis_contig8.19536.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19536.1 vs. uniprot
Match: K3WJQ3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJQ3_GLOUD)

HSP 1 Score: 58.5 bits (140), Expect = 6.380e-7
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:    4 CGCVLGTAPVNPLDGGTRKHSFRCFHCRWTSEHVGLVEDDPASLAMAALVREREDPSQPVFAKLVAGVKQREASARSKRAGMFPAS 261
            CG VL TA  + L    +++ F C HCRW S  +GL+E+DP +L M+A+ RERE   + +F  L++      A+  S     FP +
Sbjct:   79 CGSVLSTAFHDAL----QRYFFVCSHCRWDSIGLGLLEEDPDTLVMSAVARERESAQEDIFHTLLSHYSTVTATRSSCSNSSFPTA 160
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BLAST of mRNA_S-ischiensis_contig8.19536.1 vs. uniprot
Match: A0A5D6YBU6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBU6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.390e-7
Identity = 36/84 (42.86%), Postives = 46/84 (54.76%), Query Frame = 1 
Query:    4 CGCVLGTAPVNPLDGGTRKHSFRCFHCRWTSEHVGLVEDDPASLAMAALVREREDPSQPVFAKLVAGVKQREASA---RSKRAG 246
            CG  L TA    L    RK+ F C HCRW S  +GLV+DDP +L M+A+ RERE   +  F  L++      A+A   RS R G
Sbjct:   87 CGNALSTAFHETL----RKYFFVCAHCRWDSLALGLVDDDPDTLVMSAVARERESAQEDAFHALLSFHSAAAAAATPARSSRTG 166
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BLAST of mRNA_S-ischiensis_contig8.19536.1 vs. uniprot
Match: A0A2D4BH68_PYTIN (Dynactin light chain p62 subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BH68_PYTIN)

HSP 1 Score: 52.8 bits (125), Expect = 6.150e-5
Identity = 28/61 (45.90%), Postives = 32/61 (52.46%), Query Frame = 1 
Query:    4 CGCVLGTAPVNPLDGGTRKHSFRCFHCRWTSEHVGLVEDDPASLAMAALVREREDPSQPVF 186
            CG VL T          RK  F C H  W S  +GLVEDDP +L M A+ RERE   + VF
Sbjct:   78 CGSVLSTV----FHESQRKFFFACPHXHWDSLALGLVEDDPDTLLMTAVARERESHHEDVF 134
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
K3WJQ3_GLOUD6.380e-737.21Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6YBU6_9STRA6.390e-742.86Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4BH68_PYTIN6.150e-545.90Dynactin light chain p62 subunit n=1 Tax=Pythium i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2024425..2026032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog115417.EPrPW00000019281
Preferred nameDCTN4
KEGG koko:K10426
KEGG Pathwayko04962,ko05016,map04962,map05016
GOsGO:0000775,GO:0000776,GO:0000922,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005868,GO:0005869,GO:0005875,GO:0006810,GO:0006888,GO:0006928,GO:0007017,GO:0007018,GO:0007097,GO:0008150,GO:0009987,GO:0015629,GO:0015630,GO:0016192,GO:0019882,GO:0019884,GO:0019886,GO:0030286,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0047485,GO:0048002,GO:0048193,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0098687,GO:1902494
EggNOG free text desc.Source PGD
EggNOG OGs1MBVV@121069,KOG3896@1,KOG3896@2759
COG Functional cat.N
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size519
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817259.7649355-CDS-S-ischiensis_contig8:2024424..20247301622817259.7649355-CDS-S-ischiensis_contig8:2024424..2024730Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2024425..2024730 +
1695740976.5564492-CDS-S-ischiensis_contig8:2024424..20247301695740976.5564492-CDS-S-ischiensis_contig8:2024424..2024730Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2024425..2024730 +
1622817259.779132-CDS-S-ischiensis_contig8:2025820..20260301622817259.779132-CDS-S-ischiensis_contig8:2025820..2026030Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2025821..2026030 +
1695740976.5759547-CDS-S-ischiensis_contig8:2025820..20260301695740976.5759547-CDS-S-ischiensis_contig8:2025820..2026030Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2025821..2026030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19536.1prot_S-ischiensis_contig8.19536.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2024425..2026030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19536.1

>prot_S-ischiensis_contig8.19536.1 ID=prot_S-ischiensis_contig8.19536.1|Name=mRNA_S-ischiensis_contig8.19536.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=172bp
SCGCVLGTAPVNPLDGGTRKHSFRCFHCRWTSEHVGLVEDDPASLAMAAL
VREREDPSQPVFAKLVAGVKQREASARSKRAGMFPASRGGSTPPVPHGGP
WKVADIEERLAKHAREAATASQGIPRPDGSSGPPPIIPPCEGGPDPELWA
VGAAQMVRGVNERVMQPSPAGR
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mRNA from alignment at S-ischiensis_contig8:2024425..2026032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19536.1 ID=mRNA_S-ischiensis_contig8.19536.1|Name=mRNA_S-ischiensis_contig8.19536.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1608bp|location=Sequence derived from alignment at S-ischiensis_contig8:2024425..2026032+ (Schizocladia ischiensis KU_0333)
TCGTGCGGCTGTGTCCTGGGCACCGCGCCGGTGAACCCCCTCGATGGGGG
GACCAGGAAGCACAGCTTCCGGTGCTTTCACTGCCGTTGGACGAGCGAGC
ACGTGGGGCTCGTGGAGGACGACCCAGCCTCTCTGGCCATGGCCGCGCTG
GTACGCGAGAGGGAAGACCCTTCCCAGCCAGTGTTCGCCAAACTCGTGGC
GGGGGTCAAGCAGAGGGAGGCCTCGGCCCGAAGCAAGAGGGCTGGGATGT
TCCCCGCCTCCCGGGGGGGCAGCACCCCGCCCGTCCCCCACGGCGGGCCC
TGGAAGGTGGGTGCGTTCCTGCTGGGTGGTCTGTGGTCTTCGGCGTCGGA
GGACTCGCGCAGTGCGTATGTGCCGTACTGCAATTAGGTAGTCGCTCTTG
GCTTTTGCCCGAGTGGCTTGCGACGCGTATGGAATGCACGCACAAGTGGT
ACTGCTACGCCAGTGACCGAGTAAAGATGCACACTTACGGTACAGTACTT
GGAGTTCACGCTACGTAGGACACTGCGGCAGTACTGGGCTGTACTTCAAG
AGGTCGCTTCCTTCGGATTGCTGTGTGTGTGCCATGCCCACCACTTTGCC
CTTGCGCTGCTCTCTCTTCGAAGTACCTGTATACTTCCGTAGTAGTATGC
ACTCGTATATACCTGCATGTGTACTCGCGCTGTGCTGCCGCAGTCCCGAG
ACCATGGAACCCGCGCCTCGACCGAGACAGAGCATGCCCTCTCCCTCCCC
CGGAAGTACTAGTGCTCGAGTACGAGTATTGCACTGTAGTTTGAGTTTCG
AAGCGCCCCTTAGCTCTACCGACTGCACGGGCATGTACAGTACTCAACCC
TGTACAAGTGCCTACGTGCCGTGGCCCAGACGCCGCGCTTGCCCTCGCAA
CTTCTTCTGAGTTTGGGCGTTAACCGTTCAAGAGTACTACTAGTGGAAGC
GAAGATGTGCGAAGCATACCTATGGTGCTCGACATGTACATACTCATACG
GCGACTACTACAAATGGCAACGAGGCGCGATCGCATGTGTGTAAGATTGA
GTGTTCTCGTATTGCATAGCGGTTGTCACATACATCGTGCAGTAGCGTCC
GGTATACATGGGTCAATGGTCTTGGGAGTGCAGTTTGGTAAGGCAAGCAC
GGCGTGGCTACTTTTACACGCAATGCGGAGCACCGCTGCACTACTGTACG
TGGAAGCACTTTGATGCGCTCGGAGGATCACCAATGTGGTCAACTATGTT
CTATAGGACGTACTCGTACTTACGAAGTCATCATGGCGCGGTCGTCCAGC
GGAGTACCAACCTCAAGTTGCCGCACATGCCAACGGCTAACTTAACTTAA
AACACGACTGCCCCCCCTGCCCCCCACACCCCTCCTGCCCACCAAGGTGG
CCGACATTGAGGAACGCCTGGCCAAACATGCCCGCGAGGCCGCCACCGCC
AGCCAGGGCATCCCACGGCCGGACGGAAGCAGCGGCCCGCCGCCCATCAT
CCCCCCGTGCGAAGGGGGGCCCGACCCGGAGCTGTGGGCCGTTGGGGCCG
CTCAAATGGTCCGTGGGGTAAATGAAAGGGTGATGCAGCCCTCGCCGGCT
GGGAGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2024425..2026032+

>mRNA_S-ischiensis_contig8.19536.1 ID=mRNA_S-ischiensis_contig8.19536.1|Name=mRNA_S-ischiensis_contig8.19536.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1032bp|location=Sequence derived from alignment at S-ischiensis_contig8:2024425..2026032+ (Schizocladia ischiensis KU_0333)
TCGTGCGGCTGTGTCCTGGGCACCGCGCCGGTGAACCCCCTCGATGGGGG
GACCAGGAAGCACAGCTTCCGGTGCTTTCACTGCCGTTGGACGAGCGAGC
ACGTGGGGCTCGTGGAGGACGACCCAGCCTCTCTGGCCATGGCCGCGCTG
GTACGCGAGAGGGAAGACCCTTCCCAGCCAGTGTTCGCCAAACTCGTGGC
GGGGGTCAAGCAGAGGGAGGCCTCGGCCCGAAGCAAGAGGGCTGGGATGT
TCCCCGCCTCCCGGGGGGGCAGCACCCCGCCCGTCCCCCACGGCGGGCCC
TGGAAGTCGTGCGGCTGTGTCCTGGGCACCGCGCCGGTGAACCCCCTCGA
TGGGGGGACCAGGAAGCACAGCTTCCGGTGCTTTCACTGCCGTTGGACGA
GCGAGCACGTGGGGCTCGTGGAGGACGACCCAGCCTCTCTGGCCATGGCC
GCGCTGGTACGCGAGAGGGAAGACCCTTCCCAGCCAGTGTTCGCCAAACT
CGTGGCGGGGGTCAAGCAGAGGGAGGCCTCGGCCCGAAGCAAGAGGGCTG
GGATGTTCCCCGCCTCCCGGGGGGGCAGCACCCCGCCCGTCCCCCACGGC
GGGCCCTGGAAGGTGGCCGACATTGAGGAACGCCTGGCCAAACATGCCCG
CGAGGCCGCCACCGCCAGCCAGGGCATCCCACGGCCGGACGGAAGCAGCG
GCCCGCCGCCCATCATCCCCCCGTGCGAAGGGGGGCCCGACCCGGAGCTG
TGGGCCGTTGGGGCCGCTCAAATGGTCCGTGGGGTAAATGAAAGGGTGAT
GCAGCCCTCGCCGGCTGGGAGGGTGGCCGACATTGAGGAACGCCTGGCCA
AACATGCCCGCGAGGCCGCCACCGCCAGCCAGGGCATCCCACGGCCGGAC
GGAAGCAGCGGCCCGCCGCCCATCATCCCCCCGTGCGAAGGGGGGCCCGA
CCCGGAGCTGTGGGCCGTTGGGGCCGCTCAAATGGTCCGTGGGGTAAATG
AAAGGGTGATGCAGCCCTCGCCGGCTGGGAGG
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