mRNA_S-ischiensis_contig8.19535.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19535.1
Unique NamemRNA_S-ischiensis_contig8.19535.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19535.1 vs. uniprot
Match: A0A6H5KN23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN23_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 5.760e-17
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 2 
Query:  113 VEVLYGDYNGHWRQLDHMYYSQDSKCLAADHPESVQEEVESHYCPHCNSLW 265
            VEVLYGDYNG+ R L  MY+S DS+CL ADHP SVQEEVESH+CPHC S +
Sbjct:    2 VEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFF 52
[Close]
BLAST of mRNA_S-ischiensis_contig8.19535.1 vs. uniprot
Match: D7FRF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF1_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.980e-16
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 2 
Query:  113 VEVLYGDYNGHWRQLDHMYYSQDSKCLAADHPESVQEEVESHYCPHCNSLW 265
             EVLYGDYNG+ R L  MY+S DS+CL ADHP SVQEEVESH+CPHC S +
Sbjct:    2 AEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFF 52
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KN23_9PHAE5.760e-1772.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRF1_ECTSI1.980e-1670.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2023868..2024156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionDynactin subunit 4
Ec32 orthologEc-21_002710.1
Hectar predicted targeting categoryother localisation
Exons1
Model size289
Cds size222
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817287.3923335-UTR-S-ischiensis_contig8:2023867..20239341622817287.3923335-UTR-S-ischiensis_contig8:2023867..2023934Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2023868..2023934 +
1695740997.570531-UTR-S-ischiensis_contig8:2023867..20239341695740997.570531-UTR-S-ischiensis_contig8:2023867..2023934Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2023868..2023934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817287.4045146-CDS-S-ischiensis_contig8:2023934..20241561622817287.4045146-CDS-S-ischiensis_contig8:2023934..2024156Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2023935..2024156 +
1695740997.5834894-CDS-S-ischiensis_contig8:2023934..20241561695740997.5834894-CDS-S-ischiensis_contig8:2023934..2024156Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2023935..2024156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19535.1prot_S-ischiensis_contig8.19535.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2023935..2024156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19535.1

>prot_S-ischiensis_contig8.19535.1 ID=prot_S-ischiensis_contig8.19535.1|Name=mRNA_S-ischiensis_contig8.19535.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=74bp
MESDAEEHFLPSDATVEVLYGDYNGHWRQLDHMYYSQDSKCLAADHPESV
QEEVESHYCPHCNSLWQAEAQANN
back to top

mRNA from alignment at S-ischiensis_contig8:2023868..2024156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19535.1 ID=mRNA_S-ischiensis_contig8.19535.1|Name=mRNA_S-ischiensis_contig8.19535.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=289bp|location=Sequence derived from alignment at S-ischiensis_contig8:2023868..2024156+ (Schizocladia ischiensis KU_0333)
CAGTGCCACAGCTGCTACATACAGACCGGTAGCTGTGGTGCTGGGCGGAG
GAATCTAGTCTGCAAGCATGGAAAGTGACGCCGAAGAGCATTTCCTACCC
AGTGATGCAACGGTGGAGGTCCTGTACGGGGACTACAATGGACACTGGCG
GCAGTTGGATCACATGTACTACTCACAGGACAGCAAGTGCCTGGCTGCAG
ACCACCCTGAGAGCGTGCAAGAAGAAGTCGAGTCGCACTACTGCCCCCAC
TGTAATTCCTTGTGGCAGGCGGAGGCTCAGGCCAATAAC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:2023868..2024156+

>mRNA_S-ischiensis_contig8.19535.1 ID=mRNA_S-ischiensis_contig8.19535.1|Name=mRNA_S-ischiensis_contig8.19535.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=444bp|location=Sequence derived from alignment at S-ischiensis_contig8:2023868..2024156+ (Schizocladia ischiensis KU_0333)
ATGGAAAGTGACGCCGAAGAGCATTTCCTACCCAGTGATGCAACGGTGGA
GGTCCTGTACGGGGACTACAATGGACACTGGCGGCAGTTGGATCACATGT
ACTACTCACAGGACAGCAAGTGCCTGGCTGCAGACCACCCTGAGAGCGTG
CAAGAAGAAGTCGAGTCGCACTACTGCCCCCACTGTAATTCCTTGTGGCA
GGCGGAGGCTCAGGCCAATAACATGGAAAGTGACGCCGAAGAGCATTTCC
TACCCAGTGATGCAACGGTGGAGGTCCTGTACGGGGACTACAATGGACAC
TGGCGGCAGTTGGATCACATGTACTACTCACAGGACAGCAAGTGCCTGGC
TGCAGACCACCCTGAGAGCGTGCAAGAAGAAGTCGAGTCGCACTACTGCC
CCCACTGTAATTCCTTGTGGCAGGCGGAGGCTCAGGCCAATAAC
back to top