mRNA_S-ischiensis_contig8.19523.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19523.1
Unique NamemRNA_S-ischiensis_contig8.19523.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1923905..1924826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817259.6575403-CDS-S-ischiensis_contig8:1923905..19241841622817259.6575403-CDS-S-ischiensis_contig8:1923905..1924184Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1923906..1924184 -
1695740976.4957578-CDS-S-ischiensis_contig8:1923905..19241841695740976.4957578-CDS-S-ischiensis_contig8:1923905..1924184Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1923906..1924184 -
1622817259.676811-CDS-S-ischiensis_contig8:1924721..19248261622817259.676811-CDS-S-ischiensis_contig8:1924721..1924826Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1924722..1924826 -
1695740976.5070589-CDS-S-ischiensis_contig8:1924721..19248261695740976.5070589-CDS-S-ischiensis_contig8:1924721..1924826Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1924722..1924826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19523.1prot_S-ischiensis_contig8.19523.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1923906..1924826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19523.1

>prot_S-ischiensis_contig8.19523.1 ID=prot_S-ischiensis_contig8.19523.1|Name=mRNA_S-ischiensis_contig8.19523.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=128bp
GRGKEWGAAGGKGVLRMQEDWWPRDGEEANKRDERPLGGGCGGSHGHVQA
WCPCGQPSPVCPHRHPPQPPPERYGTPGGFSGFGFASGTAAASTAAAAAA
AWTCALHFRSGLSLPSQSPSSSPHFLRG
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mRNA from alignment at S-ischiensis_contig8:1923905..1924826-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19523.1 ID=mRNA_S-ischiensis_contig8.19523.1|Name=mRNA_S-ischiensis_contig8.19523.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=922bp|location=Sequence derived from alignment at S-ischiensis_contig8:1923905..1924826- (Schizocladia ischiensis KU_0333)
GGGCGGGGCAAGGAGTGGGGTGCGGCTGGAGGGAAGGGCGTCCTGCGAAT
GCAGGAGGATTGGTGGCCGCGGGACGGGGAGGAGGCGAACAAGAGGGACG
AGAGGGTGAGGAACTGCGTTGGTGTGCAGGCCGGGGTGTGTGTGAGAGTT
GCCGTATTGCCTTATTGATTTGTACATCCCAATACTTGTGCAGGCAGCAG
ATGGTCTAGCTGCTCGTACTCACAGACATGCCTGGCGAGGCGTTATTGGA
CATGCGGCATCTTGTGTACCGGTACGTCCAACAGCTGTTGTGCCTACAAG
TACTTGCCCCGTCCCTAGAAGACTCGGGGGCAAGCTCTGTTGGATGTGAG
TACGCGTATCCAAGTGCTTTGAAGCATGCAAAGGAGCCCTTCGTACTTGT
TTAGTCCTCCTCCAGTGCCGTACTGTACGTACTCGTGCCTGTTTAGTAGC
GCGGGGGCGGTTGGTTACCCATCATGTGCGGTGAATGGACAAGAGACGCA
CACGCACACGAGCACACACCACACTGGCGAGTCTTCAGGAAGCTCACCCC
CTCCACCCGCCCATCCACCCGTCCGGACCTTTCCGCCGGGGCCCCTGTCC
CCCTGGCTCGGACCCCCCGCTGCTGCGAACTCCCACCGACAGCCGCTGGG
TGGCGGCTGCGGCGGCAGCCACGGCCACGTCCAAGCCTGGTGTCCTTGCG
GGCAGCCCTCCCCTGTCTGCCCCCACCGCCACCCACCACAACCCCCGCCG
GAACGTTACGGGACACCCGGCGGTTTCAGCGGTTTCGGTTTTGCCTCTGG
CACCGCTGCTGCCTCCACCGCCGCCGCCGCCGCTGCCGCTTGGACGTGCG
CACTGCATTTCCGTTCGGGTCTGTCTCTGCCCTCGCAATCCCCGTCTAGC
TCGCCCCACTTCCTGCGCGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1923905..1924826-

>mRNA_S-ischiensis_contig8.19523.1 ID=mRNA_S-ischiensis_contig8.19523.1|Name=mRNA_S-ischiensis_contig8.19523.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=768bp|location=Sequence derived from alignment at S-ischiensis_contig8:1923905..1924826- (Schizocladia ischiensis KU_0333)
GGGCGGGGCAAGGAGTGGGGTGCGGCTGGAGGGAAGGGCGTCCTGCGAAT
GCAGGAGGATTGGTGGCCGCGGGACGGGGAGGAGGCGAACAAGAGGGACG
AGAGGGGGCGGGGCAAGGAGTGGGGTGCGGCTGGAGGGAAGGGCGTCCTG
CGAATGCAGGAGGATTGGTGGCCGCGGGACGGGGAGGAGGCGAACAAGAG
GGACGAGAGGCCGCTGGGTGGCGGCTGCGGCGGCAGCCACGGCCACGTCC
AAGCCTGGTGTCCTTGCGGGCAGCCCTCCCCTGTCTGCCCCCACCGCCAC
CCACCACAACCCCCGCCGGAACGTTACGGGACACCCGGCGGTTTCAGCGG
TTTCGGTTTTGCCTCTGGCACCGCTGCTGCCTCCACCGCCGCCGCCGCCG
CTGCCGCTTGGACGTGCGCACTGCATTTCCGTTCGGGTCTGTCTCTGCCC
TCGCAATCCCCGTCTAGCTCGCCCCACTTCCTGCGCGGCCCGCTGGGTGG
CGGCTGCGGCGGCAGCCACGGCCACGTCCAAGCCTGGTGTCCTTGCGGGC
AGCCCTCCCCTGTCTGCCCCCACCGCCACCCACCACAACCCCCGCCGGAA
CGTTACGGGACACCCGGCGGTTTCAGCGGTTTCGGTTTTGCCTCTGGCAC
CGCTGCTGCCTCCACCGCCGCCGCCGCCGCTGCCGCTTGGACGTGCGCAC
TGCATTTCCGTTCGGGTCTGTCTCTGCCCTCGCAATCCCCGTCTAGCTCG
CCCCACTTCCTGCGCGGC
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