mRNA_S-ischiensis_contig8.19518.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19518.1
Unique NamemRNA_S-ischiensis_contig8.19518.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19518.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.100e-19
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 MPTYSEMVTEAILSLKERSGSSNPAIKKFITSKYPDLSFQQFQMRLALKKGVETGKFVQIKSSFKLSPSAK 213
            MPTYSEM   AIL+LKER+GSS PAIKK I + YP L+F   Q+R ALKKG ETG F+++K+S+K+SP AK
Sbjct:    1 MPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAK 71          
BLAST of mRNA_S-ischiensis_contig8.19518.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 4.490e-19
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    4 PTYSEMVTEAILSLKERSGSSNPAIKKFITSKYPDLSFQQFQMRLALKKGVETGKFVQIKSSFKLSPSAK 213
            PTYS MV +AI +LKER GSS PA+KK I + YP L+F   QMR ALKKG E+GKF+++KSS+KLSP AK
Sbjct:    7 PTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAK 76          
BLAST of mRNA_S-ischiensis_contig8.19518.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.920e-18
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    4 PTYSEMVTEAILSLKERSGSSNPAIKKFITSKYPDLSFQQFQMRLALKKGVETGKFVQIKSSFKLSPSAKVKATK 228
            PTY+ MV +AI +LKER+GSS  AIKK IT+ YP L+F   QMR ALKKGVE+GKF+++K+S+KLS  AK  A K
Sbjct:    6 PTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80          
BLAST of mRNA_S-ischiensis_contig8.19518.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.000e-17
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    4 PTYSEMVTEAILSLKERSGSSNPAIKKFITSKYPDLSFQQFQMRLALKKGVETGKFVQIKSSFKLSPSAK 213
            PTY+ MV +AI +LKER+GSS  AIKK IT+ YP L+F   QMR ALKKGVE+GKF+++K+S+KLSP AK
Sbjct:   99 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAK 168          
BLAST of mRNA_S-ischiensis_contig8.19518.1 vs. uniprot
Match: A0A835Z9C5_9STRA (H15 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9C5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.600e-17
Identity = 41/71 (57.75%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    1 MPTYSEMVTEAILSLKERSGSSNPAIKKFITSKYPDLSFQQFQMRLALKKGVETGKFVQIKSSFKLSPSAK 213
            MPTY EM+ +AI++LK+RSGSS  AIKK+I +   DL+F Q  +R+ALKKGVE+GK ++IK+S+KL+ S K
Sbjct:    1 MPTYYEMIKDAIMALKDRSGSSPAAIKKYIEANNKDLNFAQHSLRMALKKGVESGKLIKIKASYKLADSEK 71          
BLAST of mRNA_S-ischiensis_contig8.19518.1 vs. uniprot
Match: A0A7S2SPL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPL4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.390e-17
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 MPTYSEMVTEAILSLKERSGSSNPAIKKFITSKYPDLSFQQFQMRLALKKGVETGKFVQIKSSFKLSPSAK 213
            MPTY EM   A+L+LK+RSGSSN AIKK+I + YP + F Q  +R ALKKGVE+G   +IK+S+KL+  AK
Sbjct:   18 MPTYLEMTKAALLALKDRSGSSNSAIKKYIEANYPGVKFAQHSLRAALKKGVESGMLEKIKASYKLTEKAK 88          
BLAST of mRNA_S-ischiensis_contig8.19518.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.640e-16
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 1
Query:   19 MVTEAILSLKERSGSSNPAIKKFITSKYPDLSFQQFQMRLALKKGVETGKFVQIKSSFKLSPSAK 213
            MV +AI +LKER GSS PA+KK I + YP L+F   QMR ALKKG E+GKF+++KSS+KLSP AK
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAK 65          
BLAST of mRNA_S-ischiensis_contig8.19518.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.110e-16
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1
Query:   19 MVTEAILSLKERSGSSNPAIKKFITSKYPDLSFQQFQMRLALKKGVETGKFVQIKSSFKLSPSAK 213
            MV +AI SLKER+GSS  AIKK IT+ YP L+F   QMR ALKKGVETGKF+++KSS+KLS  AK
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAK 65          
BLAST of mRNA_S-ischiensis_contig8.19518.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 3.300e-16
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 MPTYSEMVTEAILSLKERSGSSNPAIKKFITSKYPDLSFQQFQMRLALKKGVETGKFVQIKSSFKLS-----PSAKVKATKK 231
            MPTY EM  EA+ +LKER+GSS  AIKK IT+ YP L+F    MR ALKKGVE+GKF+++K+S+KLS     P+AK +  +K
Sbjct:    1 MPTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPAAKPQEAQK 82          
BLAST of mRNA_S-ischiensis_contig8.19518.1 vs. uniprot
Match: A0A7S3Y4H7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4H7_HETAK)

HSP 1 Score: 80.1 bits (196), Expect = 4.260e-16
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    7 TYSEMVTEAILSLKERSGSSNPAIKKFITSKYPDLSFQQFQMRLALKKGVETGKFVQIKSSFKLSPSAKVKATKK 231
            TY +M  EAIL+LK+R+GSS  AIKK+I S Y  ++FQQ  +RLALKKGVE GK +++K+S+K+S   K+ A KK
Sbjct:   43 TYYDMAKEAILALKDRTGSSPQAIKKYIESTYKKITFQQHSLRLALKKGVEAGKLIKVKASYKISAGEKL-AVKK 116          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMF1_ECTSI3.100e-1963.38H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI4.490e-1964.29H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LQ80_ECTSI2.920e-1861.33Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KCU1_9PHAE2.000e-1764.29H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z9C5_9STRA4.600e-1757.75H15 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2SPL4_9STRA7.390e-1757.75Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6H5JHR9_9PHAE2.640e-1663.08H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQ75_ECTSI3.110e-1667.69H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI3.300e-1656.10H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3Y4H7_HETAK4.260e-1656.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1886926..1887432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D8LMF1
Preferred nameH1
KEGG koko:K11275
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size507
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817285.736989-CDS-S-ischiensis_contig8:1886925..18874321622817285.736989-CDS-S-ischiensis_contig8:1886925..1887432Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1886926..1887432 -
1695740996.0942051-CDS-S-ischiensis_contig8:1886925..18874321695740996.0942051-CDS-S-ischiensis_contig8:1886925..1887432Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1886926..1887432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19518.1prot_S-ischiensis_contig8.19518.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1886926..1887432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19518.1

>prot_S-ischiensis_contig8.19518.1 ID=prot_S-ischiensis_contig8.19518.1|Name=mRNA_S-ischiensis_contig8.19518.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=169bp
MPTYSEMVTEAILSLKERSGSSNPAIKKFITSKYPDLSFQQFQMRLALKK
GVETGKFVQIKSSFKLSPSAKVKATKKPAAKKPVAKNPAAKKPAAKKPAA
KKPAAKKPAAKKPAAKKPAAKKPAAKKPAAKKTTPKKAPAKAKKTVTKKP
AAKKPSAKKTAKKATAKK*
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mRNA from alignment at S-ischiensis_contig8:1886926..1887432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19518.1 ID=mRNA_S-ischiensis_contig8.19518.1|Name=mRNA_S-ischiensis_contig8.19518.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=507bp|location=Sequence derived from alignment at S-ischiensis_contig8:1886926..1887432- (Schizocladia ischiensis KU_0333)
ATGCCTACCTACTCGGAGATGGTGACGGAGGCTATCCTCTCCCTCAAGGA GCGTAGCGGCTCGAGCAACCCCGCCATCAAGAAGTTCATCACGAGCAAGT ACCCCGACCTCTCCTTCCAGCAGTTCCAGATGCGCCTCGCCCTCAAGAAG GGCGTCGAAACCGGAAAGTTCGTGCAGATCAAGTCCTCCTTCAAACTCTC CCCCTCGGCCAAGGTCAAGGCGACCAAGAAGCCCGCCGCCAAGAAGCCGG TCGCCAAGAACCCTGCCGCCAAGAAGCCCGCCGCCAAGAAGCCCGCCGCC AAGAAGCCCGCCGCCAAGAAGCCCGCCGCCAAGAAGCCCGCCGCCAAGAA GCCCGCCGCCAAGAAGCCTGCCGCCAAGAAGCCCGCCGCCAAGAAGACCA CCCCGAAGAAGGCGCCGGCGAAGGCCAAGAAGACGGTGACCAAGAAGCCG GCTGCCAAGAAGCCTTCGGCCAAGAAGACGGCCAAGAAGGCCACCGCCAA GAAGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1886926..1887432-

>mRNA_S-ischiensis_contig8.19518.1 ID=mRNA_S-ischiensis_contig8.19518.1|Name=mRNA_S-ischiensis_contig8.19518.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1014bp|location=Sequence derived from alignment at S-ischiensis_contig8:1886926..1887432- (Schizocladia ischiensis KU_0333)
ATGCCTACCTACTCGGAGATGGTGACGGAGGCTATCCTCTCCCTCAAGGA
GCGTAGCGGCTCGAGCAACCCCGCCATCAAGAAGTTCATCACGAGCAAGT
ACCCCGACCTCTCCTTCCAGCAGTTCCAGATGCGCCTCGCCCTCAAGAAG
GGCGTCGAAACCGGAAAGTTCGTGCAGATCAAGTCCTCCTTCAAACTCTC
CCCCTCGGCCAAGGTCAAGGCGACCAAGAAGCCCGCCGCCAAGAAGCCGG
TCGCCAAGAACCCTGCCGCCAAGAAGCCCGCCGCCAAGAAGCCCGCCGCC
AAGAAGCCCGCCGCCAAGAAGCCCGCCGCCAAGAAGCCCGCCGCCAAGAA
GCCCGCCGCCAAGAAGCCTGCCGCCAAGAAGCCCGCCGCCAAGAAGACCA
CCCCGAAGAAGGCGCCGGCGAAGGCCAAGAAGACGGTGACCAAGAAGCCG
GCTGCCAAGAAGCCTTCGGCCAAGAAGACGGCCAAGAAGGCCACCGCCAA
GAAGTGAATGCCTACCTACTCGGAGATGGTGACGGAGGCTATCCTCTCCC
TCAAGGAGCGTAGCGGCTCGAGCAACCCCGCCATCAAGAAGTTCATCACG
AGCAAGTACCCCGACCTCTCCTTCCAGCAGTTCCAGATGCGCCTCGCCCT
CAAGAAGGGCGTCGAAACCGGAAAGTTCGTGCAGATCAAGTCCTCCTTCA
AACTCTCCCCCTCGGCCAAGGTCAAGGCGACCAAGAAGCCCGCCGCCAAG
AAGCCGGTCGCCAAGAACCCTGCCGCCAAGAAGCCCGCCGCCAAGAAGCC
CGCCGCCAAGAAGCCCGCCGCCAAGAAGCCCGCCGCCAAGAAGCCCGCCG
CCAAGAAGCCCGCCGCCAAGAAGCCTGCCGCCAAGAAGCCCGCCGCCAAG
AAGACCACCCCGAAGAAGGCGCCGGCGAAGGCCAAGAAGACGGTGACCAA
GAAGCCGGCTGCCAAGAAGCCTTCGGCCAAGAAGACGGCCAAGAAGGCCA
CCGCCAAGAAGTGA
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