mRNA_S-ischiensis_contig8.19512.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19512.1
Unique NamemRNA_S-ischiensis_contig8.19512.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19512.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 3.020e-21
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 MPTYSEMVTEAILSLKERSGSSNPAIKKFIASKYPDLSFQQHQLRLALKKGVETGKFVQIKSSYKLSPSAK 213
            MPTYSEM   AIL+LKER+GSS PAIKK I + YP L+F  HQLR ALKKG ETG F+++K+SYK+SP AK
Sbjct:    1 MPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAK 71
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BLAST of mRNA_S-ischiensis_contig8.19512.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.730e-20
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    4 PTYSEMVTEAILSLKERSGSSNPAIKKFIASKYPDLSFQQHQLRLALKKGVETGKFVQIKSSYKLSPSAKTKA 222
            PTYS MV +AI +LKER GSS PA+KK I + YP L+F  HQ+R ALKKG E+GKF+++KSSYKLSP AK  A
Sbjct:    7 PTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
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BLAST of mRNA_S-ischiensis_contig8.19512.1 vs. uniprot
Match: A0A7S2SPL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPL4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.270e-19
Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 MPTYSEMVTEAILSLKERSGSSNPAIKKFIASKYPDLSFQQHQLRLALKKGVETGKFVQIKSSYKLSPSAKT 216
            MPTY EM   A+L+LK+RSGSSN AIKK+I + YP + F QH LR ALKKGVE+G   +IK+SYKL+  AKT
Sbjct:   18 MPTYLEMTKAALLALKDRSGSSNSAIKKYIEANYPGVKFAQHSLRAALKKGVESGMLEKIKASYKLTEKAKT 89
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BLAST of mRNA_S-ischiensis_contig8.19512.1 vs. uniprot
Match: A0A835Z9C5_9STRA (H15 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9C5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.610e-19
Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    1 MPTYSEMVTEAILSLKERSGSSNPAIKKFIASKYPDLSFQQHQLRLALKKGVETGKFVQIKSSYKLSPSAK 213
            MPTY EM+ +AI++LK+RSGSS  AIKK+I +   DL+F QH LR+ALKKGVE+GK ++IK+SYKL+ S K
Sbjct:    1 MPTYYEMIKDAIMALKDRSGSSPAAIKKYIEANNKDLNFAQHSLRMALKKGVESGKLIKIKASYKLADSEK 71
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BLAST of mRNA_S-ischiensis_contig8.19512.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 6.220e-19
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    4 PTYSEMVTEAILSLKERSGSSNPAIKKFIASKYPDLSFQQHQLRLALKKGVETGKFVQIKSSYKLSPSAKTKATK 228
            PTY+ MV +AI +LKER+GSS  AIKK I + YP L+F  HQ+R ALKKGVE+GKF+++K+SYKLS  AK  A K
Sbjct:    6 PTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80
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BLAST of mRNA_S-ischiensis_contig8.19512.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.470e-18
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    4 PTYSEMVTEAILSLKERSGSSNPAIKKFIASKYPDLSFQQHQLRLALKKGVETGKFVQIKSSYKLSPSAKTKA 222
            PTY+ MV +AI +LKER+GSS  AIKK I + YP L+F  HQ+R ALKKGVE+GKF+++K+SYKLSP AK  A
Sbjct:   99 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPA 171
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BLAST of mRNA_S-ischiensis_contig8.19512.1 vs. uniprot
Match: A0A7S3Y4H7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4H7_HETAK)

HSP 1 Score: 84.7 bits (208), Expect = 8.260e-18
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    7 TYSEMVTEAILSLKERSGSSNPAIKKFIASKYPDLSFQQHQLRLALKKGVETGKFVQIKSSYKLSPSAK 213
            TY +M  EAIL+LK+R+GSS  AIKK+I S Y  ++FQQH LRLALKKGVE GK +++K+SYK+S   K
Sbjct:   43 TYYDMAKEAILALKDRTGSSPQAIKKYIESTYKKITFQQHSLRLALKKGVEAGKLIKVKASYKISAGEK 111
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BLAST of mRNA_S-ischiensis_contig8.19512.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.000e-17
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   19 MVTEAILSLKERSGSSNPAIKKFIASKYPDLSFQQHQLRLALKKGVETGKFVQIKSSYKLSPSAKTKA 222
            MV +AI +LKER GSS PA+KK I + YP L+F  HQ+R ALKKG E+GKF+++KSSYKLSP AK  A
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
[Close]
BLAST of mRNA_S-ischiensis_contig8.19512.1 vs. uniprot
Match: A0A836CPT8_9STRA (H15 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPT8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.330e-17
Identity = 42/73 (57.53%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 MPTYSEMVTEAILSLKERSGSSNPAIKKFIASKYPDLSFQQHQLRLALKKGVETGKFVQIKSSYKLSPSAKTK 219
            MPTY EM+ +AI++LKER+GSS  A+KK+I +   D+SF QH LR AL+KGVE+GK V++K+SYKL+   K K
Sbjct:    1 MPTYYEMIKDAIMALKERNGSSPAALKKYIEANNTDISFAQHSLRAALQKGVESGKLVKVKASYKLAEGEKKK 73
[Close]
BLAST of mRNA_S-ischiensis_contig8.19512.1 vs. uniprot
Match: A0A6V1U1F7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U1F7_HETAK)

HSP 1 Score: 84.7 bits (208), Expect = 2.930e-17
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    7 TYSEMVTEAILSLKERSGSSNPAIKKFIASKYPDLSFQQHQLRLALKKGVETGKFVQIKSSYKLSPSAK 213
            TY +M  EAIL+LK+R+GSS  AIKK+I S Y  ++FQQH LRLALKKGVE GK +++K+SYK+S   K
Sbjct:   43 TYYDMAKEAILALKDRTGSSPQAIKKYIESTYKKITFQQHSLRLALKKGVEAGKLIKVKASYKISAGEK 111
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMF1_ECTSI3.020e-2167.61H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI1.730e-2064.38H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2SPL4_9STRA1.270e-1962.50Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835Z9C5_9STRA4.610e-1961.97H15 domain-containing protein n=1 Tax=Tribonema mi... [more]
D8LQ80_ECTSI6.220e-1961.33Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KCU1_9PHAE4.470e-1863.01H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3Y4H7_HETAK8.260e-1860.87Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5JHR9_9PHAE1.000e-1763.24H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CPT8_9STRA1.330e-1757.53H15 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6V1U1F7_HETAK2.930e-1760.87Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1872626..1873150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue3.4e-17
Seed eggNOG ortholog2880.D8LMF1
Preferred nameH1
KEGG koko:K11275
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size525
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817285.5157433-CDS-S-ischiensis_contig8:1872625..18731501622817285.5157433-CDS-S-ischiensis_contig8:1872625..1873150Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1872626..1873150 -
1695740995.981442-CDS-S-ischiensis_contig8:1872625..18731501695740995.981442-CDS-S-ischiensis_contig8:1872625..1873150Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1872626..1873150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19512.1prot_S-ischiensis_contig8.19512.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1872626..1873150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19512.1

>prot_S-ischiensis_contig8.19512.1 ID=prot_S-ischiensis_contig8.19512.1|Name=mRNA_S-ischiensis_contig8.19512.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=175bp
MPTYSEMVTEAILSLKERSGSSNPAIKKFIASKYPDLSFQQHQLRLALKK
GVETGKFVQIKSSYKLSPSAKTKATKKPAAKKLVAKKPAAKKPAAKKPAA
KKPALKKPAAKKPAAKEPAAKKPAAKKPAAKKPAAKKPAAKKTTPKKAPV
KKAKKKVAKTPAAKKPAAKKTVKK*
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mRNA from alignment at S-ischiensis_contig8:1872626..1873150-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19512.1 ID=mRNA_S-ischiensis_contig8.19512.1|Name=mRNA_S-ischiensis_contig8.19512.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=525bp|location=Sequence derived from alignment at S-ischiensis_contig8:1872626..1873150- (Schizocladia ischiensis KU_0333)
ATGCCTACCTACTCGGAGATGGTGACGGAGGCTATCCTCTCCCTCAAGGA
GCGTAGCGGCTCGAGCAACCCCGCCATCAAAAAGTTCATCGCGAGCAAGT
ACCCCGACCTCTCCTTCCAGCAGCACCAGCTGCGCCTCGCCCTCAAGAAG
GGCGTCGAAACCGGCAAGTTCGTGCAGATCAAGTCCTCCTATAAGCTCTC
CCCCTCGGCCAAGACCAAGGCGACCAAGAAGCCCGCCGCCAAGAAGCTGG
TCGCCAAGAAGCCTGCTGCCAAGAAGCCTGCCGCCAAGAAGCCTGCTGCC
AAGAAGCCTGCTCTCAAGAAGCCTGCTGCTAAGAAGCCAGCCGCCAAGGA
GCCGGCCGCCAAGAAGCCTGCCGCTAAGAAGCCTGCCGCCAAGAAGCCTG
CCGCTAAGAAGCCTGCCGCCAAGAAGACCACCCCGAAGAAGGCGCCGGTG
AAGAAGGCCAAGAAGAAGGTGGCCAAGACGCCGGCTGCCAAGAAGCCTGC
GGCCAAGAAGACCGTCAAGAAGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1872626..1873150-

>mRNA_S-ischiensis_contig8.19512.1 ID=mRNA_S-ischiensis_contig8.19512.1|Name=mRNA_S-ischiensis_contig8.19512.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1050bp|location=Sequence derived from alignment at S-ischiensis_contig8:1872626..1873150- (Schizocladia ischiensis KU_0333)
ATGCCTACCTACTCGGAGATGGTGACGGAGGCTATCCTCTCCCTCAAGGA
GCGTAGCGGCTCGAGCAACCCCGCCATCAAAAAGTTCATCGCGAGCAAGT
ACCCCGACCTCTCCTTCCAGCAGCACCAGCTGCGCCTCGCCCTCAAGAAG
GGCGTCGAAACCGGCAAGTTCGTGCAGATCAAGTCCTCCTATAAGCTCTC
CCCCTCGGCCAAGACCAAGGCGACCAAGAAGCCCGCCGCCAAGAAGCTGG
TCGCCAAGAAGCCTGCTGCCAAGAAGCCTGCCGCCAAGAAGCCTGCTGCC
AAGAAGCCTGCTCTCAAGAAGCCTGCTGCTAAGAAGCCAGCCGCCAAGGA
GCCGGCCGCCAAGAAGCCTGCCGCTAAGAAGCCTGCCGCCAAGAAGCCTG
CCGCTAAGAAGCCTGCCGCCAAGAAGACCACCCCGAAGAAGGCGCCGGTG
AAGAAGGCCAAGAAGAAGGTGGCCAAGACGCCGGCTGCCAAGAAGCCTGC
GGCCAAGAAGACCGTCAAGAAGTGAATGCCTACCTACTCGGAGATGGTGA
CGGAGGCTATCCTCTCCCTCAAGGAGCGTAGCGGCTCGAGCAACCCCGCC
ATCAAAAAGTTCATCGCGAGCAAGTACCCCGACCTCTCCTTCCAGCAGCA
CCAGCTGCGCCTCGCCCTCAAGAAGGGCGTCGAAACCGGCAAGTTCGTGC
AGATCAAGTCCTCCTATAAGCTCTCCCCCTCGGCCAAGACCAAGGCGACC
AAGAAGCCCGCCGCCAAGAAGCTGGTCGCCAAGAAGCCTGCTGCCAAGAA
GCCTGCCGCCAAGAAGCCTGCTGCCAAGAAGCCTGCTCTCAAGAAGCCTG
CTGCTAAGAAGCCAGCCGCCAAGGAGCCGGCCGCCAAGAAGCCTGCCGCT
AAGAAGCCTGCCGCCAAGAAGCCTGCCGCTAAGAAGCCTGCCGCCAAGAA
GACCACCCCGAAGAAGGCGCCGGTGAAGAAGGCCAAGAAGAAGGTGGCCA
AGACGCCGGCTGCCAAGAAGCCTGCGGCCAAGAAGACCGTCAAGAAGTGA
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