mRNA_S-ischiensis_contig8.19508.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19508.1
Unique NamemRNA_S-ischiensis_contig8.19508.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1858990..1859995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817259.6096883-CDS-S-ischiensis_contig8:1858989..18590671622817259.6096883-CDS-S-ischiensis_contig8:1858989..1859067Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1858990..1859067 +
1695740976.4751484-CDS-S-ischiensis_contig8:1858989..18590671695740976.4751484-CDS-S-ischiensis_contig8:1858989..1859067Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1858990..1859067 +
1622817259.621114-CDS-S-ischiensis_contig8:1859755..18599951622817259.621114-CDS-S-ischiensis_contig8:1859755..1859995Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1859756..1859995 +
1695740976.485588-CDS-S-ischiensis_contig8:1859755..18599951695740976.485588-CDS-S-ischiensis_contig8:1859755..1859995Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1859756..1859995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19508.1prot_S-ischiensis_contig8.19508.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1858990..1859995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19508.1

>prot_S-ischiensis_contig8.19508.1 ID=prot_S-ischiensis_contig8.19508.1|Name=mRNA_S-ischiensis_contig8.19508.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=106bp
PGAHAVLGGLGGSGSPHLEELGRIAKLPFDAAELWTLHQYYFSPPPSVYT
TAHRDGRPESPEGQSGSSSGGGGGGDPRPSPPPLIPVADERADAPEHADG
GFGGGG
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mRNA from alignment at S-ischiensis_contig8:1858990..1859995+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19508.1 ID=mRNA_S-ischiensis_contig8.19508.1|Name=mRNA_S-ischiensis_contig8.19508.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1006bp|location=Sequence derived from alignment at S-ischiensis_contig8:1858990..1859995+ (Schizocladia ischiensis KU_0333)
CCGGGGGCGCATGCTGTCCTTGGGGGGCTGGGGGGCTCTGGGAGCCCTCA
CTTGGAGGAGCTGGGCCGTATTGCCAAGGTGGGTGGGTGGGTGGGTGTCA
TGTCGAGCCCAGTGGCGGCGCAGGGGGTGCGGGGCCGTGCGTGCACGTGG
GCAGGCACATGAGCGCCCGCGATCGCACATCAAGGGTGGGTAGCTAGGGG
GGGTAGGGAGATCAAAAGGGGGGGAGGCAGAGAGAGAGAGAGAGAGAGTG
TGTGTGTGTGTGTGTGAGTGTGTGTGTGAGAGAGAGTCTAGCCCCGTTAG
AAACGAGCATCCCTATTTTCTCATGTATCTGCCGGCAGAGGCTGCGGGGG
TGGCCTGCCTACGTGGGCGCCTGGCCCTTTCGCCCCGGCGGTACCAAACC
AGTCTGCTGTGGGCCTTTGACAGTGCAGAAGAGGGAGGCGTGGACCTTTT
TTTGTGTGTGCTCTGAGTCTGCGAGTGGTGCCCCAGGTACATTTCAGAGT
CGGTAGCTCTCTTGCAGGGGATGGAATGTGTTGGGCAGAGTAGGCGCCCG
ACTTTGCGCAGTCCTGGAGGACGGTGGTCTCCTGCCCTGCGGCACATATC
CAAGTACTTCCAAGTACCTGCGTACGGCAACCTGCCCTGTCACCGGCACC
CCCCATTGTTTATCTGCTACTCCCTACCTACCCTTCTGCACCTCTCCCTA
ACTTGACCCCGCCCCCCTGAAAATGTCCCACCCACCACACTGCCGCCGCC
ACTGCCACCACCACAGCTGCCCTTTGACGCGGCGGAGCTTTGGACCCTCC
ACCAGTACTACTTCAGTCCGCCCCCATCTGTGTATACAACTGCCCATCGG
GATGGTCGCCCGGAGAGCCCGGAGGGGCAGAGCGGCAGCAGCAGCGGCGG
CGGTGGCGGTGGAGACCCACGTCCTTCCCCTCCTCCGCTGATTCCAGTTG
CAGATGAGCGTGCTGACGCACCGGAGCATGCGGATGGGGGCTTCGGTGGC
GGTGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1858990..1859995+

>mRNA_S-ischiensis_contig8.19508.1 ID=mRNA_S-ischiensis_contig8.19508.1|Name=mRNA_S-ischiensis_contig8.19508.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=636bp|location=Sequence derived from alignment at S-ischiensis_contig8:1858990..1859995+ (Schizocladia ischiensis KU_0333)
CCGGGGGCGCATGCTGTCCTTGGGGGGCTGGGGGGCTCTGGGAGCCCTCA
CTTGGAGGAGCTGGGCCGTATTGCCAAGCCGGGGGCGCATGCTGTCCTTG
GGGGGCTGGGGGGCTCTGGGAGCCCTCACTTGGAGGAGCTGGGCCGTATT
GCCAAGCTGCCCTTTGACGCGGCGGAGCTTTGGACCCTCCACCAGTACTA
CTTCAGTCCGCCCCCATCTGTGTATACAACTGCCCATCGGGATGGTCGCC
CGGAGAGCCCGGAGGGGCAGAGCGGCAGCAGCAGCGGCGGCGGTGGCGGT
GGAGACCCACGTCCTTCCCCTCCTCCGCTGATTCCAGTTGCAGATGAGCG
TGCTGACGCACCGGAGCATGCGGATGGGGGCTTCGGTGGCGGTGGGCTGC
CCTTTGACGCGGCGGAGCTTTGGACCCTCCACCAGTACTACTTCAGTCCG
CCCCCATCTGTGTATACAACTGCCCATCGGGATGGTCGCCCGGAGAGCCC
GGAGGGGCAGAGCGGCAGCAGCAGCGGCGGCGGTGGCGGTGGAGACCCAC
GTCCTTCCCCTCCTCCGCTGATTCCAGTTGCAGATGAGCGTGCTGACGCA
CCGGAGCATGCGGATGGGGGCTTCGGTGGCGGTGGG
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