mRNA_S-ischiensis_contig8.19501.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19501.1
Unique NamemRNA_S-ischiensis_contig8.19501.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1840343..1841556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size709
Cds size708
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817259.3972666-CDS-S-ischiensis_contig8:1840343..18408801622817259.3972666-CDS-S-ischiensis_contig8:1840343..1840880Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1840344..1840880 -
1695740976.309771-CDS-S-ischiensis_contig8:1840343..18408801695740976.309771-CDS-S-ischiensis_contig8:1840343..1840880Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1840344..1840880 -
1622817259.4080417-CDS-S-ischiensis_contig8:1841385..18415561622817259.4080417-CDS-S-ischiensis_contig8:1841385..1841556Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1841386..1841556 -
1695740976.3196921-CDS-S-ischiensis_contig8:1841385..18415561695740976.3196921-CDS-S-ischiensis_contig8:1841385..1841556Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1841386..1841556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19501.1prot_S-ischiensis_contig8.19501.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1840344..1841556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19501.1

>prot_S-ischiensis_contig8.19501.1 ID=prot_S-ischiensis_contig8.19501.1|Name=mRNA_S-ischiensis_contig8.19501.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=236bp
ARRRRPPGSLNCRDRARDRAGTMELRDAGTDLGHRRDGKLLLALRSAPPS
GAEMHEKAERKPFLLLWQLQPSSGQEQGFQFRADRIRYTDPSQGSGADDG
DGSAVGGGGAAGDSGDGQGQGAPQEAIPPWGGVPGRRDPPRAQQQSQAST
ARASFGNPPPSGGYATSQQKSPAATQGFHVFGGSCFSGVEQRRGSPTAGS
AAEHRRGPRQEQRQGQGPGPGPGQGQGGVGLPEGEQ
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mRNA from alignment at S-ischiensis_contig8:1840343..1841556-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19501.1 ID=mRNA_S-ischiensis_contig8.19501.1|Name=mRNA_S-ischiensis_contig8.19501.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1214bp|location=Sequence derived from alignment at S-ischiensis_contig8:1840343..1841556- (Schizocladia ischiensis KU_0333)
GCGCGACGGCGGAGGCCCCCGGGCAGCCTCAATTGTAGAGACAGGGCACG
AGACCGGGCGGGCACGATGGAGCTTCGGGATGCGGGGACCGACCTCGGTC
ATCGAAGGGACGGAAAGCTCCTTCTGGCGCTCCGGAGTGCCCCCCCAAGC
GGGGCAGAGATGCATGAAAAGGTGGAGGGCCGTGCTGGCAAATTTTAAAA
ATGGCAAGGCTATCCTCGTCTATGAGGGGCGGGCAGGGTCCAGCAGTGCT
TTGAAGCTGATCACAGAGTACCGTCGCGCGTTTCTACGTGCTGTGCACGA
AATCCAGGCTATACTCGCTCCGTATCCGACGACGTTGTTCTTCGAAGTAT
ACGCAAAGGCCCACAACATCACGTGCCCGGCTAATGATTGGCGGGAATGA
TGCTCTCTGCAGAGCAGCAGCACTCTCTTTGATTCCTTCGGCGGGATTAC
TAGTTGCGATCGCACTAGCACTGCAAGCGGGCGGTCATTCCGCGGTCTCT
GCTACGGCAGGCGGTCAAGGGTCTCTGCTCGGACGCAGCACGGCCCGCAA
CAGTATGAGCAACAAACAGGGCCATGGGGATTGGGCCGAGCAGGCCCCGC
CACATCACTCACACCTCCCCTGCCCCTCTCTCTCCTTCCCTCCCTCCTGC
ATTCCCCGCCCCAACGGACCCCCCAGGCGGAGCGCAAGCCGTTCCTGCTC
CTGTGGCAACTGCAGCCGTCTTCTGGGCAAGAACAAGGCTTCCAGTTCCG
CGCGGACCGCATCCGATACACAGACCCCTCACAGGGTAGCGGCGCTGACG
ACGGCGACGGCAGTGCCGTTGGCGGCGGCGGCGCTGCTGGTGACAGTGGC
GATGGTCAAGGGCAGGGAGCGCCGCAGGAGGCGATTCCTCCCTGGGGAGG
TGTGCCGGGACGGCGGGACCCCCCCCGGGCCCAGCAGCAGTCCCAGGCCA
GCACCGCCAGGGCAAGTTTTGGCAACCCCCCTCCCTCAGGGGGCTACGCA
ACGTCACAGCAGAAGTCGCCAGCGGCCACCCAGGGTTTCCACGTCTTCGG
CGGCTCCTGCTTCTCGGGGGTGGAGCAGCGCCGTGGCTCTCCCACCGCCG
GGAGCGCCGCAGAGCACAGGCGAGGACCCAGGCAGGAGCAACGGCAGGGG
CAGGGGCCGGGGCCGGGGCCGGGGCAGGGGCAAGGGGGAGTTGGGCTGCC
TGAGGGCGAGCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1840343..1841556-

>mRNA_S-ischiensis_contig8.19501.1 ID=mRNA_S-ischiensis_contig8.19501.1|Name=mRNA_S-ischiensis_contig8.19501.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1416bp|location=Sequence derived from alignment at S-ischiensis_contig8:1840343..1841556- (Schizocladia ischiensis KU_0333)
GCGCGACGGCGGAGGCCCCCGGGCAGCCTCAATTGTAGAGACAGGGCACG
AGACCGGGCGGGCACGATGGAGCTTCGGGATGCGGGGACCGACCTCGGTC
ATCGAAGGGACGGAAAGCTCCTTCTGGCGCTCCGGAGTGCCCCCCCAAGC
GGGGCAGAGATGCATGAAAAGGCGCGACGGCGGAGGCCCCCGGGCAGCCT
CAATTGTAGAGACAGGGCACGAGACCGGGCGGGCACGATGGAGCTTCGGG
ATGCGGGGACCGACCTCGGTCATCGAAGGGACGGAAAGCTCCTTCTGGCG
CTCCGGAGTGCCCCCCCAAGCGGGGCAGAGATGCATGAAAAGGCGGAGCG
CAAGCCGTTCCTGCTCCTGTGGCAACTGCAGCCGTCTTCTGGGCAAGAAC
AAGGCTTCCAGTTCCGCGCGGACCGCATCCGATACACAGACCCCTCACAG
GGTAGCGGCGCTGACGACGGCGACGGCAGTGCCGTTGGCGGCGGCGGCGC
TGCTGGTGACAGTGGCGATGGTCAAGGGCAGGGAGCGCCGCAGGAGGCGA
TTCCTCCCTGGGGAGGTGTGCCGGGACGGCGGGACCCCCCCCGGGCCCAG
CAGCAGTCCCAGGCCAGCACCGCCAGGGCAAGTTTTGGCAACCCCCCTCC
CTCAGGGGGCTACGCAACGTCACAGCAGAAGTCGCCAGCGGCCACCCAGG
GTTTCCACGTCTTCGGCGGCTCCTGCTTCTCGGGGGTGGAGCAGCGCCGT
GGCTCTCCCACCGCCGGGAGCGCCGCAGAGCACAGGCGAGGACCCAGGCA
GGAGCAACGGCAGGGGCAGGGGCCGGGGCCGGGGCCGGGGCAGGGGCAAG
GGGGAGTTGGGCTGCCTGAGGGCGAGCAGGCGGAGCGCAAGCCGTTCCTG
CTCCTGTGGCAACTGCAGCCGTCTTCTGGGCAAGAACAAGGCTTCCAGTT
CCGCGCGGACCGCATCCGATACACAGACCCCTCACAGGGTAGCGGCGCTG
ACGACGGCGACGGCAGTGCCGTTGGCGGCGGCGGCGCTGCTGGTGACAGT
GGCGATGGTCAAGGGCAGGGAGCGCCGCAGGAGGCGATTCCTCCCTGGGG
AGGTGTGCCGGGACGGCGGGACCCCCCCCGGGCCCAGCAGCAGTCCCAGG
CCAGCACCGCCAGGGCAAGTTTTGGCAACCCCCCTCCCTCAGGGGGCTAC
GCAACGTCACAGCAGAAGTCGCCAGCGGCCACCCAGGGTTTCCACGTCTT
CGGCGGCTCCTGCTTCTCGGGGGTGGAGCAGCGCCGTGGCTCTCCCACCG
CCGGGAGCGCCGCAGAGCACAGGCGAGGACCCAGGCAGGAGCAACGGCAG
GGGCAGGGGCCGGGGCCGGGGCCGGGGCAGGGGCAAGGGGGAGTTGGGCT
GCCTGAGGGCGAGCAG
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