mRNA_S-ischiensis_contig8.19496.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19496.1
Unique NamemRNA_S-ischiensis_contig8.19496.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19496.1 vs. uniprot
Match: A0A6H5KAN0_9PHAE (PRP3 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN0_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 9.280e-42
Identity = 74/109 (67.89%), Postives = 93/109 (85.32%), Query Frame = 1 
Query:   34 KKAKDFTLRLDAQGRQVDAEGKLVRLAPVMTLKANKLSSAAHNPYLQHTKVDEEDGAQQVDPRVRAGGRDRTRAKKAFSFVEEGTYVKIGESLRHREHRKLLSGMISGR 360
            KKA+D TLRLDA+GRQVDA+GK+V++ PV+T+KAN+L S AHNPYLQH  V++ D AQ VDPRV+ G RD+ RAK+AF+FVEEGTY+K G++LR REHRK LSG +SGR
Sbjct:  211 KKAQDHTLRLDAKGRQVDADGKVVKMGPVLTIKANRLGSKAHNPYLQHRTVEDTDAAQAVDPRVQTGNRDK-RAKRAFNFVEEGTYIKQGDNLRFREHRKFLSGRMSGR 318
[Close]
BLAST of mRNA_S-ischiensis_contig8.19496.1 vs. uniprot
Match: A0A836CLY2_9STRA (Pre-mRNA processing factor 3-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLY2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.640e-10
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 1 
Query:   34 KKAKDFTLRLDAQGRQVDAEGKLVR--LAPVMTLKAN-KLSSAAHNPYLQHTKVDEEDGA-QQVDPRVRAGGRDRTRAKKA-FSFVEEGTYVKIGESLRHRE----HRKLLSG 345
            KKA+DFTLRLD QGRQ+D  GK+++    PV+TLKAN      A+NPYL H       GA +++D R++A      R K++ FSFV+EGT+               HR+LL G
Sbjct:   85 KKARDFTLRLDEQGRQIDETGKVIQSEFKPVVTLKANVDAQRRANNPYLAHKL-----GADKEIDARLQAKV---ARPKRSTFSFVKEGTFXXXXXXXXXXXXXXXHRQLLRG 189
[Close]
BLAST of mRNA_S-ischiensis_contig8.19496.1 vs. uniprot
Match: A0A8J2SIG5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIG5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.180e-7
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:   46 DFTLRLDAQGRQVDAEGKLV----RLAPVMTLKANKLSSAAH--NPYLQHTKVDEEDGAQQVDPRV----RAGGRDRTRAKKAFSFVEEGTYVKIGESLRHREHRKLL 339
            D  LRLD +G+ VDA G++V    R+A ++  +  +  +     NPY ++  V + DG    D RV    RA  +DR     AF+FV+EG YVK+GE+ R RE +K L
Sbjct:  115 DLALRLDEKGQHVDASGRVVDDERRVASLLVHERQEDQNKPKKVNPYTKY--VPDHDGCDVNDDRVVTKKRASKKDR-----AFAFVQEGHYVKLGEATRAREQQKHL 215
[Close]
BLAST of mRNA_S-ischiensis_contig8.19496.1 vs. uniprot
Match: A0A6S8E5X6_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8E5X6_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 8.540e-6
Identity = 41/122 (33.61%), Postives = 61/122 (50.00%), Query Frame = 1 
Query:   55 LRLDAQGRQVDAEGKLVRLAPVMTLKAN-----------KLSSAAHNPYLQHTKVDEEDGAQQ----------VDPRVRA-----GGRD---RTRAKKAFSFVEEGTYVKIGESLRHREHRK 333
            LRL+ +G+ VDA+G ++ L PV TL+ N              + + NPYLQ   +DEE+   +          VD  V A     GG D   R + K+ F FVE+G Y +I + +R +E +K
Sbjct:   78 LRLNEKGQAVDAQGNVIELKPVSTLRMNAKDKDGKQDQASTRTKSVNPYLQ--LMDEEENKLELEKKSNREGDVDIEVSAEPDEVGGPDLAGRKKKKRMFKFVEQGKYTRIADHIREKEAKK 197
[Close]
BLAST of mRNA_S-ischiensis_contig8.19496.1 vs. uniprot
Match: L8H264_ACACA (PremRNA processing factor 3 (PRP3) protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H264_ACACA)

HSP 1 Score: 52.4 bits (124), Expect = 2.160e-5
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1 
Query:   55 LRLDAQGRQVDAEGKLV---RLAPVMTLKANKLSSAAHNPYLQHTKVDEEDGAQQV-DPRVRAGGRDRTRAKKAFSFVEEGTYVKIGESLRHREHRKLLSGMI 351
            LRLDA+GR++D +G+++   R   V TL  NK         L+   V+ +       DPR+RA     TR ++AF+FVE GTYV+  + +R +  ++LL   +
Sbjct:   95 LRLDAEGREIDDQGRVISSGRAPVVATLAINKRVQREELFKLESPVVETDPSKNPYFDPRMRAPK--VTRPRRAFNFVEAGTYVRKAQRMRTKLAKELLESSM 195
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KAN0_9PHAE9.280e-4267.89PRP3 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A836CLY2_9STRA5.640e-1043.36Pre-mRNA processing factor 3-domain-containing pro... [more]
A0A8J2SIG5_9STRA5.180e-738.89Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6S8E5X6_9STRA8.540e-633.61Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
L8H264_ACACA2.160e-534.95PremRNA processing factor 3 (PRP3) protein n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1797933..1801285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue4.7e-18
Seed eggNOG ortholog115417.EPrPW00000016549
Preferred namePPP1R42
KEGG koko:K12843,ko:K17579
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000003,GO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0002177,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008092,GO:0008150,GO:0008152,GO:0008380,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010921,GO:0015030,GO:0015630,GO:0015631,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019220,GO:0019222,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031326,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0034622,GO:0034641,GO:0035303,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044030,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045292,GO:0046483,GO:0046540,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051128,GO:0051171,GO:0051174,GO:0051252,GO:0051336,GO:0060255,GO:0060968,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070840,GO:0071005,GO:0071011,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902275,GO:1903506,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.U4 U6 small nuclear ribonucleoprotein Prp3. Source PGD
EggNOG OGs1MGK4@121069,KOG2769@1,KOG2769@2759
COG Functional cat.A
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03041,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size360
Cds size360
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19496.1prot_S-ischiensis_contig8.19496.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1797933..1801285 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817284.8488002-CDS-S-ischiensis_contig8:1797932..17979921622817284.8488002-CDS-S-ischiensis_contig8:1797932..1797992Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1797933..1797992 -
1695740995.566737-CDS-S-ischiensis_contig8:1797932..17979921695740995.566737-CDS-S-ischiensis_contig8:1797932..1797992Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1797933..1797992 -
1622817284.8643494-CDS-S-ischiensis_contig8:1799172..17992891622817284.8643494-CDS-S-ischiensis_contig8:1799172..1799289Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1799173..1799289 -
1695740995.582161-CDS-S-ischiensis_contig8:1799172..17992891695740995.582161-CDS-S-ischiensis_contig8:1799172..1799289Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1799173..1799289 -
1622817284.8760026-CDS-S-ischiensis_contig8:1799964..18000661622817284.8760026-CDS-S-ischiensis_contig8:1799964..1800066Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1799965..1800066 -
1695740995.5909877-CDS-S-ischiensis_contig8:1799964..18000661695740995.5909877-CDS-S-ischiensis_contig8:1799964..1800066Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1799965..1800066 -
1622817284.8888633-CDS-S-ischiensis_contig8:1801204..18012851622817284.8888633-CDS-S-ischiensis_contig8:1801204..1801285Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1801205..1801285 -
1695740995.6028955-CDS-S-ischiensis_contig8:1801204..18012851695740995.6028955-CDS-S-ischiensis_contig8:1801204..1801285Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1801205..1801285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19496.1

>prot_S-ischiensis_contig8.19496.1 ID=prot_S-ischiensis_contig8.19496.1|Name=mRNA_S-ischiensis_contig8.19496.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=120bp
GVAEGGLDNKDKKAKDFTLRLDAQGRQVDAEGKLVRLAPVMTLKANKLSS
AAHNPYLQHTKVDEEDGAQQVDPRVRAGGRDRTRAKKAFSFVEEGTYVKI
GESLRHREHRKLLSGMISGR
back to top

mRNA from alignment at S-ischiensis_contig8:1797933..1801285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19496.1 ID=mRNA_S-ischiensis_contig8.19496.1|Name=mRNA_S-ischiensis_contig8.19496.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3353bp|location=Sequence derived from alignment at S-ischiensis_contig8:1797933..1801285- (Schizocladia ischiensis KU_0333)
GGAGTAGCGGAGGGGGGGTTGGATAACAAGGACAAGAAGGCCAAGGACTT
CACGCTGAGACTGGATGCCCAGGGCCGGCAGGTAGGTTCCGTTTTTGCGT
GCACACGTTGTTTGAGTTTGTGTGTGTGTGTGCGATGGAGCTCGCTTGCC
CTGTGCCACAGCCGTGCAGTACGAAACCAAGGCTGAGGACTTGAGTGCTG
GCCGCGGCACGCTTGCCCGTCCCGAGTACTTTCGAATTGCCCTCATGTAG
TTTCCAGTACTCGAGTACTCATACAACTGTATCCGCTTCGAAGTGCAAGT
ACGGTTCTCTAGTACCGCTGTACTTTGTACATGGTAGGAAGTACTCGAGC
AGAGAGGAAGTACTGTACCAAGCATGAGAGTGGTACTCGTACACAGAGCC
CCCCCCCCCCGGGGTGCGGGGCTCGCTTTTCTTTCTCACGCCGGATGACG
GTCGTTCCGTGAGTTCGGCTACCTCATCCCCACCCTCAGGCACACAACTT
GGCGCTCCTCCAGAGTGCATGTGCAGTACAGTAGTACTAGTAGTATGCGT
ATGCTACTACGGTGCGTGGTCAATGGTCTTGGGACTGCGGCAAGCACAGC
GCGAGCAAGTACATACTCGAGTATATACTTCGAAGTACAAATATGTACTC
ACGTTGTGCTTGCCGTAGTCCCGAGACCATTGACCACATGCCTCGGTCGA
GACGGAGCAGGACCCCTCCCTCCCGGCAGAGCCAGGGTGGGAGGGGTGCA
GAGTATATACGAAGTGCGTATACTTCCAAGTATATACTTCCAAGTATACT
TCGTACTACTACTGGGCATAGTCCTGTGCATGTCCTGTGCGGCAAAGTTG
CCAAGTTCACTGGGACAGCGGCCGTACGGCTACCAGCGGGCGTCACCACG
CGGCTGTGCGGGACCCCGTTCCCCCCCGGCCGCGCCCTCCCCCACCACCC
CCCTGCCCTCTGTCCCCCTCTGACTGGCTCGCCTTGGGGGCTACCCTGCG
GGTGCAAGCACATGCGCCACCCCTCTGCCCTCCCCCGCCTGCTCTCTCTC
CCTGTTTGCCCTGGCCCGTGGTGCGCACTAGTGGCGAGCTTCGACATGTA
GTCGCGTGCCCCCCCCCCCTTCCCCCACCGCCTCGCTGCCCCGCCATCCC
CGGTACTGCCCGCCCCGCTCTCCATCCCGTTGCCCTGGCTTGGCTTGGCT
GTGTGTACGCGCACCTCAGGTGGACGCGGAGGGGAAGCTGGTGCGCCTGG
CCCCGGTGATGACCCTCAAGGCCAACAAGCTCAGCAGCGCCGCGCACAAC
CCCTACCTCCAGCACACCAAGGTACAGTATATACTCGTATGTACTTCGAA
GTACTCACGTTGTGCTGCCCGTAGTCCCAAGACCATTGACCACGCGCCTC
GGTCGAGACAGAGCAGTCAGTACGAGAACATTGCATTGTATTGTACTTCT
TACTGTGGGTTGCTGTACTGTGCTGTGCTGTCCAAGGCAGGACTTGCTTG
TGCATTGCGGAAGCGTGCTGTTCAAGAGCGCCCAGCACGGCTTTGAGCAA
TAACTGTAGCACACTTGCGCCGCGCGAAACAGCTCGCCACTTTGCTCAGT
TGTTTCGCGCGGCGCAAGTGTGCTACAGTTATTGCTCGAAGCCGTGCTGG
GGGCTCTTGAACAGCACGCTTCCCCAATGCTTTTGCTGCTTGATCAGTTG
CCACCGGACGGTTGCAAGGTGGGGGTGGGGGTGGGAGGAAGCCGTCAGCT
ATCGAGAGGCTGCCGCGGAGCAGATGCACGGCGGAGCTACTTCCCAAGTA
CATTGCGCTTACTACAGTAGTAGATTACATTTCAACTGTTTCGCTCCCCT
TCAAGCCTTCCGGGCTTGGAGCAAGCCCCCGTTCCGATCCCGTGAAACAA
GAGCGATGCTACTGTATCATGACCCCCCCTCTCTCCCCCCGCTCTCACTC
TCTCTGCGGGTGTGTCTATTGCCCGCTGTGGGCCTGTCCCTCGCAGGTGG
ATGAGGAGGACGGCGCGCAGCAGGTGGACCCCCGGGTGCGGGCGGGGGGG
AGGGACCGCACCCGCGCCAAGAAGGCGTTTTCCTTTGTGGAGGAGGGAAC
CTACGTCAAGATTGTGAGCAGACCGTCGTAGCAGCAGCTGCTGCTGCTGC
TGCTGCGGCAGCGGCGGTGGTGGCGGCGGCGGCGCGTGCAGTGCCGCGCC
GCCGCACAGTAGTGGGGTACGTTTAGTAGCCCTTGTCTTGGGGGGGGCGG
CGCACCGATCGATCCCTCGCAGAGCTCGGTAGTTTCCAGTGTAACAGGAG
TAGGATGCAGACAGTTCAGTATGGTGCTGCCGTCCTGTAAGGGCTGGGGA
CGCCCAAGCCCAGTGCGGTACCCGGGGCTTGAAAGAAGGTGGGAAGGAGG
ACGGGAAGGCGCCGTGCGCTCGGCATGCGCGATTTGACGGAAGGGATCAG
GAGATAAACCGCGGCGGCGACCGTTTTCGCTTGCTGAGGGCTGTGGTGGG
CCCATGGACCGGCTGGCCGACGTTTTTGCAGTTTTAAAGTTTTTTTGTGT
TATCCCCCCGCTTTCGGCAGGGCGGGCCCTGGGATCTCTATCTTTTTTTG
TTTGTTTTTCTTTTGTTCTATTTTTGTTCTCCATGCACCCACAGCAACGA
ACTGGTCACAGAGGTTGGTCGCGAAATTGGGGTGCGTGACGCGCCCGCCG
ACGCTTGCTCAACTTCCTTTGCTCCCTTTCCCAAGGCCTCGCTCGGAAGG
ACGCGCGGCACATAGCACACTTCAAGTCGCTCGGAGGGGGCCTGCGTACT
GTAGTACTACTTCGTATGACAACAACAAGCAGGCGTGTGAGCGACGTCCG
AGCAAAGATAGCCGTGTGGCACGGGGAGTGTGTAGGTAGTGCCTGCTAGC
GGTCTGAAATAGTGTACCTAGGCTCTGTGCAGGTCGTCCTACCTTCGTCG
TACTCCCACACACTTCGAAGTGCCTTGTTCCCTGGGGGTACAGCAATGGC
GCCTACGTCGGGACGTTCAGTGTGGTTTTCTCGCGCGAACGTGCCACTTG
CCTCCGAGTGCCGCAAGTACTTCCAAGTGCTTGTAGGTACTTCAAAGCAC
CTGCGGTAGGTACTACTATTATGTAGTACTTCGAAGTACCTATGTGCTGA
ACTCTCCTCCTCGTACTTCCAAGCACTCGTACTTCAAAGCACCTGCGGTA
GGTACTGCATAGTAGTTCGAAGTACCTATGTGCGGAATTCTCCTCCTCCG
CCGGCTCCTCCGCCGGGCTCCCCTCTTCTCCCCAACTTGGCAGGGGGAGA
GCCTCCGCCACCGGGAGCACCGAAAGCTGCTCTCCGGCATGATCTCCGGC
CGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:1797933..1801285-

>mRNA_S-ischiensis_contig8.19496.1 ID=mRNA_S-ischiensis_contig8.19496.1|Name=mRNA_S-ischiensis_contig8.19496.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=720bp|location=Sequence derived from alignment at S-ischiensis_contig8:1797933..1801285- (Schizocladia ischiensis KU_0333)
GGAGTAGCGGAGGGGGGGTTGGATAACAAGGACAAGAAGGCCAAGGACTT
CACGCTGAGACTGGATGCCCAGGGCCGGCAGGGAGTAGCGGAGGGGGGGT
TGGATAACAAGGACAAGAAGGCCAAGGACTTCACGCTGAGACTGGATGCC
CAGGGCCGGCAGGTGGACGCGGAGGGGAAGCTGGTGCGCCTGGCCCCGGT
GATGACCCTCAAGGCCAACAAGCTCAGCAGCGCCGCGCACAACCCCTACC
TCCAGCACACCAAGGTGGACGCGGAGGGGAAGCTGGTGCGCCTGGCCCCG
GTGATGACCCTCAAGGCCAACAAGCTCAGCAGCGCCGCGCACAACCCCTA
CCTCCAGCACACCAAGGTGGATGAGGAGGACGGCGCGCAGCAGGTGGACC
CCCGGGTGCGGGCGGGGGGGAGGGACCGCACCCGCGCCAAGAAGGCGTTT
TCCTTTGTGGAGGAGGGAACCTACGTCAAGATTGTGGATGAGGAGGACGG
CGCGCAGCAGGTGGACCCCCGGGTGCGGGCGGGGGGGAGGGACCGCACCC
GCGCCAAGAAGGCGTTTTCCTTTGTGGAGGAGGGAACCTACGTCAAGATT
GGGGAGAGCCTCCGCCACCGGGAGCACCGAAAGCTGCTCTCCGGCATGAT
CTCCGGCCGCGGGGAGAGCCTCCGCCACCGGGAGCACCGAAAGCTGCTCT
CCGGCATGATCTCCGGCCGC
back to top