mRNA_S-ischiensis_contig8.19494.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19494.1
Unique NamemRNA_S-ischiensis_contig8.19494.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19494.1 vs. uniprot
Match: A0A6H5K0L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L2_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 6.350e-49
Identity = 94/141 (66.67%), Postives = 110/141 (78.01%), Query Frame = 1 
Query:   37 LQVYLTKKERKRIRRTAXXXXXXXXXXXXXXXXXXXXXXKMKLSNFMKVLGDQAVADPSKVEAMVMSQMRQRRANHEARNAARRLTPEERREKXRRKLQEDTSNELHVAVFRVADMSDPKKRFKVDVNAQQRYLTGCVLMC 459
            ++VYLTKKERKRIRRT      XXXX             KM +SNFM+VLGDQAV DPSKVEA+VM Q+ +R+A HEARN A +LTP+E+R+K +RKL EDTS EL VAV+RVADMSDPK+RFKVDVNAQQRYLTG V+MC
Sbjct:    1 MKVYLTKKERKRIRRTTRMEREXXXXDKIALGLLPTPEPKMSMSNFMQVLGDQAVVDPSKVEALVMGQVHRRKAEHEARNQAAKLTPQEKRDKRKRKLLEDTSKELQVAVYRVADMSDPKRRFKVDVNAQQRYLTGGVVMC 141
[Close]
BLAST of mRNA_S-ischiensis_contig8.19494.1 vs. uniprot
Match: D7FK64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK64_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 3.360e-46
Identity = 91/143 (63.64%), Postives = 107/143 (74.83%), Query Frame = 1 
Query:   31 APLQVYLTKKERKRIRRTAXXXXXXXXXXXXXXXXXXXXXXKMKLSNFMKVLGDQAVADPSKVEAMVMSQMRQRRANHEARNAARRLTPEERREKXRRKLQEDTSNELHVAVFRVADMSDPKKRFKVDVNAQQRYLTGCVLMC 459
            A ++VYLTKKERKRIRRT                       KM +SNFM+VLGDQAV DPSKVEA+VM Q+ +R+A HEARN A +LTP+E+R+K +RKL EDTS EL VAV+RVADMSDPK+RFKVDVNAQQRYLTG V+MC
Sbjct:  407 AAMKVYLTKKERKRIRRTTRMEREREKQDKIALGLLPTPEPKMSMSNFMQVLGDQAVVDPSKVEALVMGQVHRRKAEHEARNQAAKLTPQEKRDKRKRKLLEDTSKELQVAVYRVADMSDPKRRFKVDVNAQQRYLTGGVVMC 549
[Close]
BLAST of mRNA_S-ischiensis_contig8.19494.1 vs. uniprot
Match: A0A7S4D475_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D475_HETAK)

HSP 1 Score: 147 bits (370), Expect = 3.070e-42
Identity = 81/136 (59.56%), Postives = 96/136 (70.59%), Query Frame = 1 
Query:   55 KKERKRIRRTAXXXXXXXXXXXXXXXXXXXXXXKMKLSNFMKVLGDQAVADPSKVEAMVMSQMRQRRANHEARNAARRLTPEERREKXRRKLQEDTSNELHVAVFRVADMSDPKKRFKVDVNAQQRYLTGCVLMCK 462
            KKERKR+RR A                      KMKLSNFMKV+G+QAVADPSKVE +V +Q+R R  NHE RN AR+LTP+ER++K R+K  ED +   HVAVFRV D+SDP+KRFKVDVNAQQ YLTG VL+CK
Sbjct:    1 KKERKRLRRQARLEREREKQDKIALGLMQPPEPKMKLSNFMKVIGEQAVADPSKVEKLVTAQVRARERNHEMRNQARKLTPQERKDKKRQKAMEDGAAGNHVAVFRVRDLSDPQKRFKVDVNAQQHYLTGGVLLCK 136
[Close]
BLAST of mRNA_S-ischiensis_contig8.19494.1 vs. uniprot
Match: A0A7S2G0F4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G0F4_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.100e-38
Identity = 85/150 (56.67%), Postives = 100/150 (66.67%), Query Frame = 1 
Query:   13 GGXXXXAPLQVYLTKKERKRIRRTAXXXXXXXXXXXXXXXXXXXXXXKMKLSNFMKVLGDQAVADPSKVEAMVMSQMRQRRANHEARNAARRLTPEERREKXRRKLQEDTSNELHVAVFRVADMSDPKKRFKVDVNAQQRYLTGCVLMCK 462
            GG      + VYLTKKERKRIRR A                      K+KL+NFMKVLGDQAVADPSK+E  VM Q++ R  NHE RN AR+LTP ER+EK R+KL EDTS ++ VA+FRV DMSD + +FKVD+NAQQ  LTG VL CK
Sbjct:  392 GGKAKEPSVPVYLTKKERKRIRRQAREERQREQQDKIALGLMAPPEPKLKLANFMKVLGDQAVADPSKIERKVMEQVQARVMNHEMRNQARKLTPAERKEKKRKKLAEDTSLQVTVALFRVLDMSDKQLQFKVDMNAQQNNLTGGVLQCK 541
[Close]
BLAST of mRNA_S-ischiensis_contig8.19494.1 vs. uniprot
Match: A0A7S2RZ89_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ89_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.160e-37
Identity = 81/142 (57.04%), Postives = 100/142 (70.42%), Query Frame = 1 
Query:   37 LQVYLTKKERKRIRRTAXXXXXXXXXXXXXXXXXXXXXXKMKLSNFMKVLGDQAVADPSKVEAMVMSQMRQRRANHEARNAARRLTPEERREKXRRKLQEDTSNELHVAVFRVADMSDPKKRFKVDVNAQQRYLTGCVLMCK 462
            L V+LTKKERKRIRR A                      K+KL+NFMKVLGDQAVADPSK+E  VM Q++QR  NHE RN A++LTP+ER++K RRKL EDTS ++ VAV+RV D+S+ + +FKVD+NAQQ  LTG VL CK
Sbjct:  292 LPVFLTKKERKRIRRQAREERRNEMLDKIALGLMPAPEPKLKLANFMKVLGDQAVADPSKIEKKVMEQVQQRVMNHEMRNMAQKLTPQERKDKKRRKLTEDTSRQVVVAVYRVKDLSNQQHQFKVDMNAQQNSLTGGVLTCK 433
[Close]
BLAST of mRNA_S-ischiensis_contig8.19494.1 vs. uniprot
Match: A0A8K1CCE6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCE6_PYTOL)

HSP 1 Score: 138 bits (347), Expect = 3.480e-35
Identity = 77/142 (54.23%), Postives = 95/142 (66.90%), Query Frame = 1 
Query:   37 LQVYLTKKERKRIRRTAXXXXXXXXXXXXXXXXXXXXXXKMKLSNFMKVLGDQAVADPSKVEAMVMSQMRQRRANHEARNAARRLTPEERREKXRRKLQEDTSNELHVAVFRVADMSDPKKRFKVDVNAQQRYLTGCVLMCK 462
            + + LT  ERK+IRR                        K+KLSN MKVLG+QAVADPS +E  V  QM QR  NHE RN AR+LTPEERREK  RK++ED + ++HVAVFRV D+++P+ RFKVDVNAQQ +LTG VL+CK
Sbjct:  365 IPLMLTAAERKKIRRQNRAEREKEKQDKIAIGLMPPPEPKVKLSNMMKVLGEQAVADPSAIERKVRQQMAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVAVFRVPDLANPQHRFKVDVNAQQYHLTGGVLICK 506
[Close]
BLAST of mRNA_S-ischiensis_contig8.19494.1 vs. uniprot
Match: A0A836CLY2_9STRA (Pre-mRNA processing factor 3-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLY2_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.240e-34
Identity = 80/142 (56.34%), Postives = 92/142 (64.79%), Query Frame = 1 
Query:   31 APLQVYLTKKERKRIRRTAXXXXXXXXXXXXXXXXXXXXXXKMKLSNFMKVLGDQAVADPSKVEAMVMSQMRQRRANHEARNAARRLTPEERREKXRRKLQEDTSNELHVAVFRVADMSDPKKRFKVDVNAQQRYLTGCVLM 456
            A + +YLTK ERKR+RR A                   XX KMKLSNFM++LG+QAVADPSKVE MV  Q+  RR  HE RN AR+LTPEERR K R KL  D + E    V  VAD+++PK RFKVD NAQQ  LTGCVLM
Sbjct:  315 AAMPMYLTKAERKRVRRQARGEKEQEKRDKMALGLIPPXXPKMKLSNFMRILGEQAVADPSKVERMVQQQVEARRMGHEMRNQARKLTPEERRAKRRAKLAADNARETRAVVLCVADLTNPKHRFKVDANAQQLGLTGCVLM 456
[Close]
BLAST of mRNA_S-ischiensis_contig8.19494.1 vs. uniprot
Match: A0A5D6XZ83_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ83_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.440e-34
Identity = 77/142 (54.23%), Postives = 94/142 (66.20%), Query Frame = 1 
Query:   37 LQVYLTKKERKRIRRTAXXXXXXXXXXXXXXXXXXXXXXKMKLSNFMKVLGDQAVADPSKVEAMVMSQMRQRRANHEARNAARRLTPEERREKXRRKLQEDTSNELHVAVFRVADMSDPKKRFKVDVNAQQRYLTGCVLMCK 462
            L + LT  ERK+IRR                        K+KLSN M+VL DQAVADPS +E  V  Q+ QR  NHE RN AR+LTPEERREK  RK++ED + ++HVAVFRV D+S+P+ RFKVDVNAQQ +LTG VL+CK
Sbjct:  371 LPLMLTAAERKKIRRQNRADREKEKQDKIALGLLPPPEPKVKLSNMMRVLADQAVADPSAIERKVREQVAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVAVFRVPDLSNPQHRFKVDVNAQQYHLTGGVLICK 512
[Close]
BLAST of mRNA_S-ischiensis_contig8.19494.1 vs. uniprot
Match: A0A2D4CF61_PYTIN (U4/U6 small nuclear ribonucleoprotein Prp3, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF61_PYTIN)

HSP 1 Score: 135 bits (341), Expect = 1.830e-34
Identity = 79/142 (55.63%), Postives = 95/142 (66.90%), Query Frame = 1 
Query:   37 LQVYLTKKERKRIRRTAXXXXXXXXXXXXXXXXXXXXXXKMKLSNFMKVLGDQAVADPSKVEAMVMSQMRQRRANHEARNAARRLTPEERREKXRRKLQEDTSNELHVAVFRVADMSDPKKRFKVDVNAQQRYLTGCVLMCK 462
            + + LT  ERK+IRR        X   X           K+KLSN MKVLG+QAVADPS VE  V  QM QR  NHE RN AR+LTPEERREK  +K++ED S ++H AVFRV+D+S+P+ RFKVD NAQQ +LTG VL CK
Sbjct:  320 IPLMLTAAERKKIRRQNRAEREKXKQDXIALGLMPPPEPKVKLSNMMKVLGEQAVADPSAVERKVRQQMAQREKNHEMRNLARKLTPEERREKKLKKIKEDASGDIHAAVFRVSDLSNPQHRFKVDXNAQQFHLTGGVLCCK 461
[Close]
BLAST of mRNA_S-ischiensis_contig8.19494.1 vs. uniprot
Match: K3W6M6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6M6_GLOUD)

HSP 1 Score: 135 bits (339), Expect = 5.390e-34
Identity = 76/142 (53.52%), Postives = 94/142 (66.20%), Query Frame = 1 
Query:   37 LQVYLTKKERKRIRRTAXXXXXXXXXXXXXXXXXXXXXXKMKLSNFMKVLGDQAVADPSKVEAMVMSQMRQRRANHEARNAARRLTPEERREKXRRKLQEDTSNELHVAVFRVADMSDPKKRFKVDVNAQQRYLTGCVLMCK 462
            L + LT  ERK+IRR                        K+KLSN M+VL DQAVADPS +E  V  Q+ QR  NHE RN AR+LTPEERREK  RK++ED + ++HVAVF+V D+S+P+ RFKVDVNAQQ +LTG VL+CK
Sbjct:  393 LPLMLTAAERKKIRRQNRADREKEKQDKIALGLLPPPEPKVKLSNMMRVLADQAVADPSAIERKVRQQVAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVAVFKVPDLSNPQHRFKVDVNAQQFHLTGGVLICK 534
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0L2_9PHAE6.350e-4966.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK64_ECTSI3.360e-4663.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4D475_HETAK3.070e-4259.56Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2G0F4_9STRA2.100e-3856.67Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RZ89_9STRA1.160e-3757.04Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8K1CCE6_PYTOL3.480e-3554.23Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A836CLY2_9STRA1.240e-3456.34Pre-mRNA processing factor 3-domain-containing pro... [more]
A0A5D6XZ83_9STRA1.440e-3454.23Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4CF61_PYTIN1.830e-3455.63U4/U6 small nuclear ribonucleoprotein Prp3, putati... [more]
K3W6M6_GLOUD5.390e-3453.52Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1793013..1796040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue9.6e-40
Seed eggNOG ortholog2880.D7FK64
Preferred namePPP1R42
KEGG koko:K12843,ko:K17579
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000003,GO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0002177,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008092,GO:0008150,GO:0008152,GO:0008380,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010921,GO:0015030,GO:0015630,GO:0015631,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019220,GO:0019222,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031326,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0034622,GO:0034641,GO:0035303,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044030,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045292,GO:0046483,GO:0046540,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051128,GO:0051171,GO:0051174,GO:0051252,GO:0051336,GO:0060255,GO:0060968,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070840,GO:0071005,GO:0071011,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902275,GO:1903506,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG2769@1,KOG2769@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03041,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size467
Cds size465
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19494.1prot_S-ischiensis_contig8.19494.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1793013..1796040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817284.775234-CDS-S-ischiensis_contig8:1793012..17931201622817284.775234-CDS-S-ischiensis_contig8:1793012..1793120Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1793013..1793120 -
1695740995.5187962-CDS-S-ischiensis_contig8:1793012..17931201695740995.5187962-CDS-S-ischiensis_contig8:1793012..1793120Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1793013..1793120 -
1622817284.7865674-CDS-S-ischiensis_contig8:1794093..17942701622817284.7865674-CDS-S-ischiensis_contig8:1794093..1794270Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1794094..1794270 -
1695740995.5334985-CDS-S-ischiensis_contig8:1794093..17942701695740995.5334985-CDS-S-ischiensis_contig8:1794093..1794270Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1794094..1794270 -
1622817284.7981415-CDS-S-ischiensis_contig8:1795364..17954401622817284.7981415-CDS-S-ischiensis_contig8:1795364..1795440Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1795365..1795440 -
1695740995.5443733-CDS-S-ischiensis_contig8:1795364..17954401695740995.5443733-CDS-S-ischiensis_contig8:1795364..1795440Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1795365..1795440 -
1622817284.811196-CDS-S-ischiensis_contig8:1795936..17960401622817284.811196-CDS-S-ischiensis_contig8:1795936..1796040Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1795937..1796040 -
1695740995.5551722-CDS-S-ischiensis_contig8:1795936..17960401695740995.5551722-CDS-S-ischiensis_contig8:1795936..1796040Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1795937..1796040 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19494.1

>prot_S-ischiensis_contig8.19494.1 ID=prot_S-ischiensis_contig8.19494.1|Name=mRNA_S-ischiensis_contig8.19494.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=155bp
GAKAGGGGGAAPLQVYLTKKERKRIRRTARMEREREKQDKIALGLIPAPE
PKMKLSNFMKVLGDQAVADPSKVEAMVMSQMRQRRANHEARNAARRLTPE
ERREKKRRKLQEDTSNELHVAVFRVADMSDPKKRFKVDVNAQQRYLTGCV
LMCK*
back to top

mRNA from alignment at S-ischiensis_contig8:1793013..1796040-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19494.1 ID=mRNA_S-ischiensis_contig8.19494.1|Name=mRNA_S-ischiensis_contig8.19494.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3028bp|location=Sequence derived from alignment at S-ischiensis_contig8:1793013..1796040- (Schizocladia ischiensis KU_0333)
GGAGCCAAGGCGGGGGGGGGGGGGGGGGCGGCGCCGTTGCAGGTGTACTT
AACCAAGAAGGAGAGGAAGAGGATCCGGCGGACAGCTCGCATGGAGAGGG
AGAGGTGGGTCGGGAGGAGTAGAAGGGTGGGGGGGGGCAAGATGGAGTTG
CAAGTACTGTACGAGTACGAGTACCTACTTTAGCTTGCCGCAGCAGCAGG
GTGCTGTGGCGCGCCTGAAATGTCTCTGCGGAGTGCGTTCACCGAACCGA
CGGGCCGGTCGACCCCTGGCAAGCTTTGTCAGGGGACCTGGTGTACGAGT
ATTTTCGTGCAAGTACTCGAGTATTCTATTGTAGTAGTGTGCTACGACTG
TCCCTCCCTCCCTCCTCCCTCCCTCCCTCACCCCCTTCCTCCCTCCCTCC
CACCTTCCCTGGCTTTCTTTCTCCCTCCTTCGCTGCCCCCCCCTCCCCCC
TCCCCTCCCTCTCGGGCTCCCTCTGCCGCCTCCCCCGCCCTCCACATCAA
AATCTCGCTCTTGCGGCTTTGCCCTCCCCTCTTGCTCTTACACCCCTCCC
CCCCCCGCCCCCCTGCCGTGGCTCCCTGCCCATCTTGCTGGCTGTATCAG
GGAGAAGCAGGACAAGATAGCCCTGGGGCTCATCCCCGCACCGGAGCCCA
AGATGAAGCTCTCCAACTTCATGAAGGTGGGCGGCATGCCATGCTTTGCT
ACTTGCTTCGCAGTCTCTCTGTGTCGAGGCGCTGTCCTTGTGCTTGGAAG
TACTTAGAAGTACTTCAGGAGTAGAGCCTCTCCAATGTGATGAAGGTGGG
CGGCATGCCATGCTTTGGTACGTGGAAGCCCTGCAGTGCTTCGCAGGCTC
TCGTGTCGAGGCGCTGTCCTTGCACCTGGTAGTACTTTGAAGTACTCGAG
GAGTAGAGCGCTGCGGTACTGCCTGGGAGGCAGAGGAGGGGAGGGGAGGA
AGACCGAGTGGAGACAGGCACTGTAGTTGATCTCCGTGCTCAAGTTACTG
CAGTACCCTACCTAGTAGCGTTTCGAGGCGCAACAGTACTTTGCCGCGCT
CTGCCGTGACGCAGGCGATGTGTCGGGCGCTCGTGCTATAGTGTACTCTA
CTCAGTGCAGTGAAGTACAGTACTGTACACTGGTACGTACCTGTACTTCC
CGAGCACAATACTTGGAAGTAGTGAAAGAAGCACTCGCAGCGTCACTGGC
CCTCCCAGAGGCCCGCTTGGCAGAGGCCCGGCAGGCCTCCAAGCCTTGAC
CTGCCATGGCATCTCCATGCGCGTCCATCTCTCCGACCTGCCCGCCCGCC
CGCCCACCCACGCCGACTTGTCCGCTGCCGGGAACCGACCGACTGAACTT
ATACTCGAGTACGAGCACACTCAATGTCGCAGACGCACGGTTGTGCCTCG
TTACATTGTTGTTTTTAATTATTGTGATGGCATGCGAGTTCCGGGCCCCG
TCCCAACAACCTAAGGCGGGGACCTCTCCAGAAGCCCTTCTTTTTTGTTT
TATTGGGATTGATGTGAGTTCCGGGCCCCGTCCCAACAACCCAAGGCGGG
GACCTCACCAGAAGCCCTTCTTGGCTCGCAGGGCACGAAAGTCAGGCCAA
AAGCGATAGCCATTCGTTTTGAGTGGTAGATAAGCGGCGAGTTCCAGGCC
CCGTGCCAAAAGGCTCGTCCCAAATCAGGGCTCAACGAAGCCCTTCCTTC
CCTCGCAGGGCAGGAAGAAAACCTTCTTTATATGAATCACGACCGATCTT
TGGCCGCCACCGCCTCCCAGGTCCTGGGAGACCAGGCCGTGGCGGACCCG
TCCAAGGTGGAGGCCATGGTCATGTCCCAGATGCGCCAAAGGAGGGCCAA
CCACGAGGCGCGCAACGCCGCGCGCCGGCTCACCCCAGAGGAGCGGCGGG
AGAAGAAGCGCCGGAAGCTGCAAGAGGACACCAGCAACGAGCTTCATGTG
TGTGTGTGTGTGTGTGCGTGCGTGCGAGCATTCGTATATGCATGAGATCG
TGCATGTGAGGGTGATTGTGGTTGTGGTTGTGTGTGTGTGTGCTCGCGCG
CATGTGTGTGCATGCATGTGTGAGCTCGTGCATGTGAGGGTGATTGTGGT
TGTGCTCGGGCGTGTATGTGTGTGTGCGCGCGCGCGCATGAGCATGCGTG
TATGCATGTGTGAGCTCGTGCATGTGAGGGTGGTTGTGGTTGTGGTTGTG
TGTGTGTGTGTGTGTGCGTGCGTGCGTGCGTGCGTGCGCGTGCGTACTAT
GTATTGGGCCCCGTTTCGTGTGTGTCTTGCTCCGTCTTGCGCCACCGCCG
AAGGACACGGGCTACTCTGCTCCTACAGCAGCACGCGCTGAAGTACCTAA
CTCAAGTCGGTCGTACACGTACGCGAGTTATGTGAACGGGAGACCATTTG
CCAGAGAAGCTTTGGCGGTGCTTCGATCGACGCGACGGGCATTGTTGTGT
TTGCCCGAGTTGCACCATGCTGTACTATGAGTACAGTAGGTAGATTGGAA
TACCTCCGGCGCTGTAAATCATCACAAACATACTCAAAGTATATTGCGGC
ACCTGCGGTGCAGAGAGGGTTCATTCACGCATCGCGGGCGTTCACAACTA
TGAGGGTATACTGACCTGCCGCGGCGATTCTACCGTGGCCGCCCCTGCCG
CCACCGCCTCCGCCGCAACCGCCGCCTCCTGGGTACGCTGCCGCCGCCCT
GCCGCGGCGATTCTACCGTGGCCGCCGCTGCCGCCGCTGCCTCCGCCGCA
ACCGCCACCGCCTCCGCCGCAACCGGCACCGCCTCCGCCGCAACCACCGC
CGCCACCGCCGCCGCCTCTGCCGCAACCACCACCATCACCGCCACTGCCT
CCGCCGCAACCCCCACCACTACCGCCATCGCCGCCGCCGCCGCCGGGGGC
GCCGTCTCACCTGCTTGCAGGTGGCTGTGTTCCGTGTGGCTGACATGTCG
GACCCCAAGAAGAGGTTCAAGGTGGACGTGAATGCCCAGCAGCGCTACCT
CACGGGCTGCGTGCTCATGTGCAAGTGA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:1793013..1796040-

>mRNA_S-ischiensis_contig8.19494.1 ID=mRNA_S-ischiensis_contig8.19494.1|Name=mRNA_S-ischiensis_contig8.19494.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=930bp|location=Sequence derived from alignment at S-ischiensis_contig8:1793013..1796040- (Schizocladia ischiensis KU_0333)
GGAGCCAAGGCGGGGGGGGGGGGGGGGGCGGCGCCGTTGCAGGTGTACTT
AACCAAGAAGGAGAGGAAGAGGATCCGGCGGACAGCTCGCATGGAGAGGG
AGAGGGAGCCAAGGCGGGGGGGGGGGGGGGGGCGGCGCCGTTGCAGGTGT
ACTTAACCAAGAAGGAGAGGAAGAGGATCCGGCGGACAGCTCGCATGGAG
AGGGAGAGGGAGAAGCAGGACAAGATAGCCCTGGGGCTCATCCCCGCACC
GGAGCCCAAGATGAAGCTCTCCAACTTCATGAAGGGAGAAGCAGGACAAG
ATAGCCCTGGGGCTCATCCCCGCACCGGAGCCCAAGATGAAGCTCTCCAA
CTTCATGAAGGTCCTGGGAGACCAGGCCGTGGCGGACCCGTCCAAGGTGG
AGGCCATGGTCATGTCCCAGATGCGCCAAAGGAGGGCCAACCACGAGGCG
CGCAACGCCGCGCGCCGGCTCACCCCAGAGGAGCGGCGGGAGAAGAAGCG
CCGGAAGCTGCAAGAGGACACCAGCAACGAGCTTCATGTCCTGGGAGACC
AGGCCGTGGCGGACCCGTCCAAGGTGGAGGCCATGGTCATGTCCCAGATG
CGCCAAAGGAGGGCCAACCACGAGGCGCGCAACGCCGCGCGCCGGCTCAC
CCCAGAGGAGCGGCGGGAGAAGAAGCGCCGGAAGCTGCAAGAGGACACCA
GCAACGAGCTTCATGTGGCTGTGTTCCGTGTGGCTGACATGTCGGACCCC
AAGAAGAGGTTCAAGGTGGACGTGAATGCCCAGCAGCGCTACCTCACGGG
CTGCGTGCTCATGTGCAAGTGAGTGGCTGTGTTCCGTGTGGCTGACATGT
CGGACCCCAAGAAGAGGTTCAAGGTGGACGTGAATGCCCAGCAGCGCTAC
CTCACGGGCTGCGTGCTCATGTGCAAGTGA
back to top