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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 438 |
| Cds size | 285 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817259.149872-UTR-S-ischiensis_contig8:1677378..1677530 | 1622817259.149872-UTR-S-ischiensis_contig8:1677378..1677530 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 1677379..1677530 + |
| 1695740976.1179085-UTR-S-ischiensis_contig8:1677378..1677530 | 1695740976.1179085-UTR-S-ischiensis_contig8:1677378..1677530 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 1677379..1677530 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817259.159748-CDS-S-ischiensis_contig8:1677530..1677716 | 1622817259.159748-CDS-S-ischiensis_contig8:1677530..1677716 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 1677531..1677716 + |
| 1695740976.135288-CDS-S-ischiensis_contig8:1677530..1677716 | 1695740976.135288-CDS-S-ischiensis_contig8:1677530..1677716 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 1677531..1677716 + |
| 1622817259.1716263-CDS-S-ischiensis_contig8:1679274..1679373 | 1622817259.1716263-CDS-S-ischiensis_contig8:1679274..1679373 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 1679275..1679373 + |
| 1695740976.145937-CDS-S-ischiensis_contig8:1679274..1679373 | 1695740976.145937-CDS-S-ischiensis_contig8:1679274..1679373 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 1679275..1679373 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19477.1 >prot_S-ischiensis_contig8.19477.1 ID=prot_S-ischiensis_contig8.19477.1|Name=mRNA_S-ischiensis_contig8.19477.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=95bp
MASYLQKRASGNSRSRNLQLNSDSEVPEPPPNVPMSPTDANLSPCSRKLW
ARKRPMNQPSRQPTQPRAWSSLVEDPRESGSEGSSGEEEEEEEGE back to topmRNA from alignment at S-ischiensis_contig8:1677379..1679373+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig8.19477.1 ID=mRNA_S-ischiensis_contig8.19477.1|Name=mRNA_S-ischiensis_contig8.19477.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1995bp|location=Sequence derived from alignment at S-ischiensis_contig8:1677379..1679373+ (Schizocladia ischiensis KU_0333)
GTGGCTCCTGTGGCCTGGCTCTTGACAGAAGCGGGATCTCTGGTGGGGCG
TGATTACCGGTTCAGTTTTAGTTTTACGCGGGAGGGGGGAGGGCTTCTTC
GCCCGAGCCAAGTCTCAAGGAGGGGTCGGGTCGGGTGTGGTTGCTGAACA
CCATGGCGTCCTATCTCCAGAAAAGGGCGTCCGGGAACTCCCGGTCAAGG
AACCTCCAGCTGAACTCGGACTCGGAAGTGCCCGAGCCACCGCCAAATGT
CCCAATGTCTCCGACGGATGCCAATTTGAGCCCGTGCTCGCGCAAACTGT
GGGCGCGCAAGCGCCCAATGAACCAGCCATCACGCCAGGTACTTGACGCC
GGACGAGATAGTTGCCGCCCTGACTCCTGTACGCGGGTTTTCTAACCCAA
AAAGGGAGTGGGGAATTTTCGCTCTTGGCGTGGGCTCTTGTGGCCCAGGG
TCTACGCTACTCTTGACCGGGCTGCTGGGGGTGCGCGTCTTGCATTAGTG
TCTTGCTTTAGCGGAGCACAAGCTAGCATACCGTGGCCTCCAGGCACACA
GGAGGACCCTGCGCCATATGTGCGAACGAGCCCGCCCGCCTCTTTTTTCC
TCCACCGTGCCATGCCCCGAAACCTGCTCTGGGGGCGAGGTTGCACTGCT
CCAGTCACGGCAATGGGAACAGAGTAGTTGATTCATTCCTGGGCAACCGC
GACGGAGGGACTGAAAGCGAACGTAGAATGACGAAGCACTCTGTCGGAGG
AGTAAACTTCGCTCAAGTGACGTCCGCTGGGCTTGGGCCGGGATCCAAGC
CGTATCACTTGAATCATATGACAAACCCGAAGGAGAGCACCAGTCAGCAG
CCCCCCCACGGGGCCGTGCACACAGTCTCGGAGATATTCCCCTTCCAAAT
TTTGGGGCAATCCATCCCTGTCGGCGTGGAAAGGCAACGCCTCCCCATTA
TGGGCCGGCCACTTGACTTTTTTGCCCATGTGGCGGGCGTGATGTTATGC
ATCTTAGGCGATTATCGATGGAAATGAGGATTGCCGCCAGTATCTCAGAG
GTGGGCAGCGAAACGTGTGGTGCTCATTGGACGTGAGTCGTGCTGCAGGA
GGGGTGAATCACGCCAAGTAGGCCCGAGCATGCAGACATATCATCGCGGT
CGGCGAGCGATGGGTATTTGTCGACGCTTCCGTGTTCCGAGTCGCCCGAG
GTTCGTGGATCATCGGGAATGTCTTGCGATGGTCGGTGACTTTCGCCCGA
CCCTTGAGATTGATTTCTCGCTCAGAGTGAGACTTTTCGTGATATGCCCT
CGCTTTTTTTGGGCACATCGTTTTTGCCAGGGTCATAGGTGGACCCCGCC
GTGCTTGCCTTGCGCCCGTGACCATTGACCACGCCCCCCTTCCGAGAGAG
CGGAGCAAATAATATGTCCTCATTAGCACTGAGCAATTTGTCCTCACCGC
TTCCGGGCCCGCGTACTGTGTTCATGCGCATACTGCGTTACGAGTAATGT
CGATGGTTGTGAAGATGTTTGACTTGTATGGTCAATGGTCTCGGGACTAC
GGCAAACACAATGTGTGTTCACCCATATATACCGCGGGGTCTCTCAATAC
GGCGGGGAGGGGGGCTCCCATATGGACCCTGCGCCTCAGGGTCAGGAAGG
GGGTTGGTCTGCCCGGTGTGACAACTGTAGTGTGCGCCAAACGTAGTTTG
TGACCGTGTGTGATAGGAGTGCTTGGTCCACCTGTCAGGCCTTGCGGTTC
GAGCACAACATTGGCCCCGCACAGTAAGCTCTGGTGGCAAAATAGCGCGT
ATTTGGCCTCACCCGATCGTACGGATCACGCGAACGCCGTGCCACCCGCA
CCCCACGCGCGCGTGCGCGCGCGCGCGCGCACACACACACACACAGCCCA
CACAACCACGGGCGTGGAGCTCGCTGGTGGAAGACCCGCGCGAGTCCGGC
AGCGAGGGCTCATCCGGCGAGGAGGAGGAGGAGGAGGAAGGCGAG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig8:1677379..1679373+ >mRNA_S-ischiensis_contig8.19477.1 ID=mRNA_S-ischiensis_contig8.19477.1|Name=mRNA_S-ischiensis_contig8.19477.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=570bp|location=Sequence derived from alignment at S-ischiensis_contig8:1677379..1679373+ (Schizocladia ischiensis KU_0333)
ATGGCGTCCTATCTCCAGAAAAGGGCGTCCGGGAACTCCCGGTCAAGGAA
CCTCCAGCTGAACTCGGACTCGGAAGTGCCCGAGCCACCGCCAAATGTCC
CAATGTCTCCGACGGATGCCAATTTGAGCCCGTGCTCGCGCAAACTGTGG
GCGCGCAAGCGCCCAATGAACCAGCCATCACGCCAGATGGCGTCCTATCT
CCAGAAAAGGGCGTCCGGGAACTCCCGGTCAAGGAACCTCCAGCTGAACT
CGGACTCGGAAGTGCCCGAGCCACCGCCAAATGTCCCAATGTCTCCGACG
GATGCCAATTTGAGCCCGTGCTCGCGCAAACTGTGGGCGCGCAAGCGCCC
AATGAACCAGCCATCACGCCAGCCCACACAACCACGGGCGTGGAGCTCGC
TGGTGGAAGACCCGCGCGAGTCCGGCAGCGAGGGCTCATCCGGCGAGGAG
GAGGAGGAGGAGGAAGGCGAGCCCACACAACCACGGGCGTGGAGCTCGCT
GGTGGAAGACCCGCGCGAGTCCGGCAGCGAGGGCTCATCCGGCGAGGAGG
AGGAGGAGGAGGAAGGCGAG back to top
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