mRNA_S-ischiensis_contig8.19468.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19468.1
Unique NamemRNA_S-ischiensis_contig8.19468.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19468.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 6.440e-20
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    4 PTYSEMVTEAILELKERGGSSNPAIKKFITSKYPDLSFQQHQLRLALKKGVETGKFVQIKSSFKLSASAKVKATK 228
            PTY+ MV +AI  LKER GSS  AIKK IT+ YP L+F  HQ+R ALKKGVE+GKF+++K+S+KLSA AK  A K
Sbjct:    6 PTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80          
BLAST of mRNA_S-ischiensis_contig8.19468.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 7.840e-20
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    4 PTYSEMVTEAILELKERGGSSNPAIKKFITSKYPDLSFQQHQLRLALKKGVETGKFVQIKSSFKLSASAK 213
            PTYS MV +AI  LKERGGSS PA+KK I + YP L+F  HQ+R ALKKG E+GKF+++KSS+KLS  AK
Sbjct:    7 PTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAK 76          
BLAST of mRNA_S-ischiensis_contig8.19468.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.080e-19
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 MPTYSEMVTEAILELKERGGSSNPAIKKFITSKYPDLSFQQHQLRLALKKGVETGKFVQIKSSFKLSASAK 213
            MPTYSEM   AIL LKER GSS PAIKK I + YP L+F  HQLR ALKKG ETG F+++K+S+K+S  AK
Sbjct:    1 MPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAK 71          
BLAST of mRNA_S-ischiensis_contig8.19468.1 vs. uniprot
Match: A0A7S3Y4H7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4H7_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 3.430e-18
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    7 TYSEMVTEAILELKERGGSSNPAIKKFITSKYPDLSFQQHQLRLALKKGVETGKFVQIKSSFKLSASAKVKATKK 231
            TY +M  EAIL LK+R GSS  AIKK+I S Y  ++FQQH LRLALKKGVE GK +++K+S+K+SA  K+ A KK
Sbjct:   43 TYYDMAKEAILALKDRTGSSPQAIKKYIESTYKKITFQQHSLRLALKKGVEAGKLIKVKASYKISAGEKL-AVKK 116          
BLAST of mRNA_S-ischiensis_contig8.19468.1 vs. uniprot
Match: A0A835Z9C5_9STRA (H15 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9C5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.140e-18
Identity = 42/71 (59.15%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 MPTYSEMVTEAILELKERGGSSNPAIKKFITSKYPDLSFQQHQLRLALKKGVETGKFVQIKSSFKLSASAK 213
            MPTY EM+ +AI+ LK+R GSS  AIKK+I +   DL+F QH LR+ALKKGVE+GK ++IK+S+KL+ S K
Sbjct:    1 MPTYYEMIKDAIMALKDRSGSSPAAIKKYIEANNKDLNFAQHSLRMALKKGVESGKLIKIKASYKLADSEK 71          
BLAST of mRNA_S-ischiensis_contig8.19468.1 vs. uniprot
Match: A0A6V1U1F7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U1F7_HETAK)

HSP 1 Score: 86.3 bits (212), Expect = 4.390e-18
Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    7 TYSEMVTEAILELKERGGSSNPAIKKFITSKYPDLSFQQHQLRLALKKGVETGKFVQIKSSFKLSASAK--VKATKKP 234
            TY +M  EAIL LK+R GSS  AIKK+I S Y  ++FQQH LRLALKKGVE GK +++K+S+K+SA  K  VK   KP
Sbjct:   43 TYYDMAKEAILALKDRTGSSPQAIKKYIESTYKKITFQQHSLRLALKKGVEAGKLIKVKASYKISAGEKLAVKKASKP 120          
BLAST of mRNA_S-ischiensis_contig8.19468.1 vs. uniprot
Match: A0A7S2SPL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPL4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.650e-18
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 MPTYSEMVTEAILELKERGGSSNPAIKKFITSKYPDLSFQQHQLRLALKKGVETGKFVQIKSSFKLSASAK 213
            MPTY EM   A+L LK+R GSSN AIKK+I + YP + F QH LR ALKKGVE+G   +IK+S+KL+  AK
Sbjct:   18 MPTYLEMTKAALLALKDRSGSSNSAIKKYIEANYPGVKFAQHSLRAALKKGVESGMLEKIKASYKLTEKAK 88          
BLAST of mRNA_S-ischiensis_contig8.19468.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.000e-18
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    1 MPTYSEMVTEAILELKERGGSSNPAIKKFITSKYPDLSFQQHQLRLALKKGVETGKFVQIKSSFKLSAS 207
            MPTY EM  EA+  LKER GSS  AIKK IT+ YP L+F  H LR ALKKGVE+GKF+++K+S+KLSA+
Sbjct:    1 MPTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLSAA 69          
BLAST of mRNA_S-ischiensis_contig8.19468.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.620e-17
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    1 MPTYSEMVTEAILELKERGGSSNPAIKKFITSKYPDLSFQQHQLRLALKKGVETGKFVQIKSSFKLSASAKVKATK 228
            MPTY EM  EA+  LKER GSS  AIKK IT+ YP L+F  H +R ALKKGVE+GKF+++K+S+KLSA  +  A K
Sbjct:    1 MPTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPAAK 76          
BLAST of mRNA_S-ischiensis_contig8.19468.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.990e-17
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1
Query:   19 MVTEAILELKERGGSSNPAIKKFITSKYPDLSFQQHQLRLALKKGVETGKFVQIKSSFKLSASAK 213
            MV +AI  LKER GSS  AIKK IT+ YP L+F  HQ+R ALKKGVETGKF+++KSS+KLSA AK
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAK 65          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI6.440e-2062.67Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G4I5_ECTSI7.840e-2064.29H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LMF1_ECTSI1.080e-1964.79H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3Y4H7_HETAK3.430e-1860.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z9C5_9STRA4.140e-1859.15H15 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6V1U1F7_HETAK4.390e-1858.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SPL4_9STRA4.650e-1859.15Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6H5JIM8_9PHAE8.000e-1863.77H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI1.620e-1759.21H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQ75_ECTSI1.990e-1767.69H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1648471..1648941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue7.5e-16
Seed eggNOG ortholog2880.D7G4I5
Preferred nameH1
KEGG koko:K11275
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size471
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.8266253-CDS-S-ischiensis_contig8:1648470..16489411622817283.8266253-CDS-S-ischiensis_contig8:1648470..1648941Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1648471..1648941 -
1695740994.850685-CDS-S-ischiensis_contig8:1648470..16489411695740994.850685-CDS-S-ischiensis_contig8:1648470..1648941Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1648471..1648941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19468.1prot_S-ischiensis_contig8.19468.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1648471..1648941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19468.1

>prot_S-ischiensis_contig8.19468.1 ID=prot_S-ischiensis_contig8.19468.1|Name=mRNA_S-ischiensis_contig8.19468.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=157bp
MPTYSEMVTEAILELKERGGSSNPAIKKFITSKYPDLSFQQHQLRLALKK
GVETGKFVQIKSSFKLSASAKVKATKKPAAKKPVAKKAATKPKAAAKKPA
AKKPAAKKPAAKKPAAKKTTPKKKAPVKKAKKTVAKKPAAKKPAAKKTPK
KAAAKK*
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mRNA from alignment at S-ischiensis_contig8:1648471..1648941-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19468.1 ID=mRNA_S-ischiensis_contig8.19468.1|Name=mRNA_S-ischiensis_contig8.19468.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=471bp|location=Sequence derived from alignment at S-ischiensis_contig8:1648471..1648941- (Schizocladia ischiensis KU_0333)
ATGCCTACCTACTCGGAGATGGTGACGGAGGCTATCCTCGAGCTCAAGGA GCGCGGTGGCTCGAGCAACCCCGCCATCAAGAAGTTCATCACGAGCAAGT ACCCCGACCTCTCCTTCCAGCAGCACCAGCTGCGCCTCGCCCTCAAGAAG GGTGTCGAAACCGGCAAGTTCGTGCAGATCAAGTCCTCCTTCAAACTCTC CGCCTCGGCCAAGGTCAAGGCGACCAAGAAGCCCGCCGCCAAGAAGCCGG TCGCCAAGAAGGCCGCGACCAAGCCGAAGGCCGCCGCCAAGAAGCCTGCT GCGAAGAAGCCGGCTGCTAAGAAGCCTGCCGCCAAGAAGCCGGCCGCCAA GAAGACCACCCCGAAGAAGAAGGCGCCGGTGAAGAAGGCCAAGAAGACGG TAGCCAAGAAGCCGGCTGCCAAGAAGCCTGCGGCCAAGAAGACCCCCAAG AAGGCCGCCGCCAAGAAGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1648471..1648941-

>mRNA_S-ischiensis_contig8.19468.1 ID=mRNA_S-ischiensis_contig8.19468.1|Name=mRNA_S-ischiensis_contig8.19468.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=942bp|location=Sequence derived from alignment at S-ischiensis_contig8:1648471..1648941- (Schizocladia ischiensis KU_0333)
ATGCCTACCTACTCGGAGATGGTGACGGAGGCTATCCTCGAGCTCAAGGA
GCGCGGTGGCTCGAGCAACCCCGCCATCAAGAAGTTCATCACGAGCAAGT
ACCCCGACCTCTCCTTCCAGCAGCACCAGCTGCGCCTCGCCCTCAAGAAG
GGTGTCGAAACCGGCAAGTTCGTGCAGATCAAGTCCTCCTTCAAACTCTC
CGCCTCGGCCAAGGTCAAGGCGACCAAGAAGCCCGCCGCCAAGAAGCCGG
TCGCCAAGAAGGCCGCGACCAAGCCGAAGGCCGCCGCCAAGAAGCCTGCT
GCGAAGAAGCCGGCTGCTAAGAAGCCTGCCGCCAAGAAGCCGGCCGCCAA
GAAGACCACCCCGAAGAAGAAGGCGCCGGTGAAGAAGGCCAAGAAGACGG
TAGCCAAGAAGCCGGCTGCCAAGAAGCCTGCGGCCAAGAAGACCCCCAAG
AAGGCCGCCGCCAAGAAGTGAATGCCTACCTACTCGGAGATGGTGACGGA
GGCTATCCTCGAGCTCAAGGAGCGCGGTGGCTCGAGCAACCCCGCCATCA
AGAAGTTCATCACGAGCAAGTACCCCGACCTCTCCTTCCAGCAGCACCAG
CTGCGCCTCGCCCTCAAGAAGGGTGTCGAAACCGGCAAGTTCGTGCAGAT
CAAGTCCTCCTTCAAACTCTCCGCCTCGGCCAAGGTCAAGGCGACCAAGA
AGCCCGCCGCCAAGAAGCCGGTCGCCAAGAAGGCCGCGACCAAGCCGAAG
GCCGCCGCCAAGAAGCCTGCTGCGAAGAAGCCGGCTGCTAAGAAGCCTGC
CGCCAAGAAGCCGGCCGCCAAGAAGACCACCCCGAAGAAGAAGGCGCCGG
TGAAGAAGGCCAAGAAGACGGTAGCCAAGAAGCCGGCTGCCAAGAAGCCT
GCGGCCAAGAAGACCCCCAAGAAGGCCGCCGCCAAGAAGTGA
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