mRNA_S-ischiensis_contig8.19455.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19455.1
Unique NamemRNA_S-ischiensis_contig8.19455.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1563311..1563849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size539
Cds size528
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.6579804-UTR-S-ischiensis_contig8:1563310..15633211622817266.6579804-UTR-S-ischiensis_contig8:1563310..1563321Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1563311..1563321 +
1695740981.0605392-UTR-S-ischiensis_contig8:1563310..15633211695740981.0605392-UTR-S-ischiensis_contig8:1563310..1563321Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1563311..1563321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.6712198-CDS-S-ischiensis_contig8:1563321..15638491622817266.6712198-CDS-S-ischiensis_contig8:1563321..1563849Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1563322..1563849 +
1695740981.0713577-CDS-S-ischiensis_contig8:1563321..15638491695740981.0713577-CDS-S-ischiensis_contig8:1563321..1563849Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1563322..1563849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19455.1prot_S-ischiensis_contig8.19455.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1563322..1563849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19455.1

>prot_S-ischiensis_contig8.19455.1 ID=prot_S-ischiensis_contig8.19455.1|Name=mRNA_S-ischiensis_contig8.19455.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
MVEGEHSAAPGLVAVTGAKVEMAREPAAMAREATVMPPAPVSTAAVPGVS
VQPAAAPAPAPTPSSFSCSSSLTTAPAAAAADAPAGEKGLGLNAKDPPPP
QQPATPQLGPEPGPPGGAAANSAPMDVDVPEQALASGERTGAAAGAVVDA
VSDGQMVALALLGLGQGLPTRAPPPP
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mRNA from alignment at S-ischiensis_contig8:1563311..1563849+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19455.1 ID=mRNA_S-ischiensis_contig8.19455.1|Name=mRNA_S-ischiensis_contig8.19455.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=539bp|location=Sequence derived from alignment at S-ischiensis_contig8:1563311..1563849+ (Schizocladia ischiensis KU_0333)
CACCCTTTAACATGGTGGAGGGCGAGCACTCCGCCGCCCCCGGACTTGTA
GCAGTGACGGGGGCCAAGGTGGAGATGGCGCGTGAGCCAGCGGCGATGGC
GCGTGAGGCAACTGTGATGCCTCCGGCCCCGGTTTCAACCGCCGCTGTGC
CGGGGGTGTCCGTTCAGCCTGCTGCAGCGCCTGCACCAGCGCCAACGCCA
TCGTCCTTCTCCTGCTCCTCCTCCTTGACGACGGCACCTGCCGCCGCGGC
GGCTGATGCTCCTGCTGGGGAGAAGGGGTTGGGGCTGAATGCCAAGGACC
CACCACCCCCTCAGCAGCCAGCGACACCACAGCTGGGGCCGGAACCGGGA
CCACCAGGCGGGGCTGCAGCCAACTCCGCACCGATGGACGTCGACGTTCC
TGAGCAGGCGTTGGCCAGCGGGGAGAGGACTGGGGCCGCGGCTGGGGCCG
TTGTCGATGCGGTGTCCGATGGCCAAATGGTGGCCCTGGCTCTGCTGGGG
CTCGGGCAAGGCTTGCCCACGCGGGCACCGCCACCGCCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1563311..1563849+

>mRNA_S-ischiensis_contig8.19455.1 ID=mRNA_S-ischiensis_contig8.19455.1|Name=mRNA_S-ischiensis_contig8.19455.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1056bp|location=Sequence derived from alignment at S-ischiensis_contig8:1563311..1563849+ (Schizocladia ischiensis KU_0333)
ATGGTGGAGGGCGAGCACTCCGCCGCCCCCGGACTTGTAGCAGTGACGGG
GGCCAAGGTGGAGATGGCGCGTGAGCCAGCGGCGATGGCGCGTGAGGCAA
CTGTGATGCCTCCGGCCCCGGTTTCAACCGCCGCTGTGCCGGGGGTGTCC
GTTCAGCCTGCTGCAGCGCCTGCACCAGCGCCAACGCCATCGTCCTTCTC
CTGCTCCTCCTCCTTGACGACGGCACCTGCCGCCGCGGCGGCTGATGCTC
CTGCTGGGGAGAAGGGGTTGGGGCTGAATGCCAAGGACCCACCACCCCCT
CAGCAGCCAGCGACACCACAGCTGGGGCCGGAACCGGGACCACCAGGCGG
GGCTGCAGCCAACTCCGCACCGATGGACGTCGACGTTCCTGAGCAGGCGT
TGGCCAGCGGGGAGAGGACTGGGGCCGCGGCTGGGGCCGTTGTCGATGCG
GTGTCCGATGGCCAAATGGTGGCCCTGGCTCTGCTGGGGCTCGGGCAAGG
CTTGCCCACGCGGGCACCGCCACCGCCAATGGTGGAGGGCGAGCACTCCG
CCGCCCCCGGACTTGTAGCAGTGACGGGGGCCAAGGTGGAGATGGCGCGT
GAGCCAGCGGCGATGGCGCGTGAGGCAACTGTGATGCCTCCGGCCCCGGT
TTCAACCGCCGCTGTGCCGGGGGTGTCCGTTCAGCCTGCTGCAGCGCCTG
CACCAGCGCCAACGCCATCGTCCTTCTCCTGCTCCTCCTCCTTGACGACG
GCACCTGCCGCCGCGGCGGCTGATGCTCCTGCTGGGGAGAAGGGGTTGGG
GCTGAATGCCAAGGACCCACCACCCCCTCAGCAGCCAGCGACACCACAGC
TGGGGCCGGAACCGGGACCACCAGGCGGGGCTGCAGCCAACTCCGCACCG
ATGGACGTCGACGTTCCTGAGCAGGCGTTGGCCAGCGGGGAGAGGACTGG
GGCCGCGGCTGGGGCCGTTGTCGATGCGGTGTCCGATGGCCAAATGGTGG
CCCTGGCTCTGCTGGGGCTCGGGCAAGGCTTGCCCACGCGGGCACCGCCA
CCGCCA
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