mRNA_S-ischiensis_contig8.19452.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19452.1
Unique NamemRNA_S-ischiensis_contig8.19452.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1556357..1557432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size662
Cds size660
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817258.9140625-CDS-S-ischiensis_contig8:1556356..15566831622817258.9140625-CDS-S-ischiensis_contig8:1556356..1556683Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1556357..1556683 +
1695740975.9399655-CDS-S-ischiensis_contig8:1556356..15566831695740975.9399655-CDS-S-ischiensis_contig8:1556356..1556683Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1556357..1556683 +
1622817258.924716-CDS-S-ischiensis_contig8:1557099..15574321622817258.924716-CDS-S-ischiensis_contig8:1557099..1557432Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1557100..1557432 +
1695740975.9508257-CDS-S-ischiensis_contig8:1557099..15574321695740975.9508257-CDS-S-ischiensis_contig8:1557099..1557432Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1557100..1557432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19452.1prot_S-ischiensis_contig8.19452.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1556357..1557432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19452.1

>prot_S-ischiensis_contig8.19452.1 ID=prot_S-ischiensis_contig8.19452.1|Name=mRNA_S-ischiensis_contig8.19452.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=220bp
MPPPQACPKSSAPPQRAQGLFSGVARTFCVLLGSSGMKIDNQGMGTVVEA
RKALGQKAAAEADGGGYEAGSTEAVEVEEGGADASVLTYGSRIPKRKAVL
SVCIMEEAEDEPMNGDQCSSSDSSSSGGGDEGVGTGGQEGGGADGDGSGG
GGDGDGDGRGPDRATNGHRSPSPKRPRLADGASELQGRGDREGCTCGEES
AGARICACRQTLRAQGMGPP
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mRNA from alignment at S-ischiensis_contig8:1556357..1557432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19452.1 ID=mRNA_S-ischiensis_contig8.19452.1|Name=mRNA_S-ischiensis_contig8.19452.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1076bp|location=Sequence derived from alignment at S-ischiensis_contig8:1556357..1557432+ (Schizocladia ischiensis KU_0333)
ATGCCCCCGCCGCAGGCCTGTCCCAAGTCTAGCGCCCCCCCGCAGCGCGC
CCAGGGATTGTTCTCGGGCGTTGCTCGGACATTCTGCGTCCTCCTGGGAT
CGTCGGGTATGAAGATCGACAACCAAGGAATGGGCACCGTCGTAGAAGCG
AGGAAGGCCCTCGGCCAGAAGGCCGCGGCGGAGGCGGACGGGGGTGGTTA
TGAAGCGGGTTCCACAGAAGCAGTGGAGGTTGAGGAAGGGGGGGCGGATG
CTTCGGTGCTCACATATGGATCCAGGATTCCCAAGCGCAAGGCCGTCCTA
TCAGTGTGCATCATGGAGGAGGCAGAGGTGCGGCGATAACTTAATGGAGA
ATACCATCGCTTTTGTAAAAATAAACATTGCGTGGTGTTCGACTCAAAAC
GATAAAGGTTTCCGCCCGACCCTTGGCACGCCCCTCGCACGCTCCTTCCG
CATTCGTGTTCATTTACGCAACTGTAAGATACAGCATTGCCAGTTGGCCT
GCGTTGTAGTTTCGACGGATTTTGCCTGCCTTGGGAAGCAGTGTGTGTAC
CACGGACTGCACTCATGGTCTCATTTGCAGGACTCCAAGGCCGTCAGGCG
TGGGGTTAAATCCCCAGGTCCCCAGTTGTCCTTCCATGAGAATGGAGTAG
GTGTTTCATATGATATCTACCGTGCCCCCTGACCCCCTGTGACACCCCCC
TACCCGATTTTGGCGATGTCTGCAAAACGGTTCCTGGGCACAGGACGAGC
CCATGAATGGGGACCAGTGCTCATCTTCTGACAGCAGCAGCAGCGGCGGC
GGCGACGAGGGCGTCGGCACAGGCGGGCAGGAGGGCGGCGGCGCTGATGG
AGATGGCAGCGGCGGCGGTGGCGACGGCGACGGCGACGGGAGGGGCCCCG
ATAGGGCCACCAATGGCCATCGCAGCCCGAGCCCCAAGCGACCGCGGCTT
GCTGACGGTGCATCGGAGTTGCAAGGCAGAGGCGACAGGGAGGGGTGCAC
TTGTGGTGAGGAGTCGGCCGGCGCCCGGATCTGTGCGTGTCGCCAGACCC
TGCGTGCCCAGGGCATGGGGCCTCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1556357..1557432+

>mRNA_S-ischiensis_contig8.19452.1 ID=mRNA_S-ischiensis_contig8.19452.1|Name=mRNA_S-ischiensis_contig8.19452.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1320bp|location=Sequence derived from alignment at S-ischiensis_contig8:1556357..1557432+ (Schizocladia ischiensis KU_0333)
ATGCCCCCGCCGCAGGCCTGTCCCAAGTCTAGCGCCCCCCCGCAGCGCGC
CCAGGGATTGTTCTCGGGCGTTGCTCGGACATTCTGCGTCCTCCTGGGAT
CGTCGGGTATGAAGATCGACAACCAAGGAATGGGCACCGTCGTAGAAGCG
AGGAAGGCCCTCGGCCAGAAGGCCGCGGCGGAGGCGGACGGGGGTGGTTA
TGAAGCGGGTTCCACAGAAGCAGTGGAGGTTGAGGAAGGGGGGGCGGATG
CTTCGGTGCTCACATATGGATCCAGGATTCCCAAGCGCAAGGCCGTCCTA
TCAGTGTGCATCATGGAGGAGGCAGAGATGCCCCCGCCGCAGGCCTGTCC
CAAGTCTAGCGCCCCCCCGCAGCGCGCCCAGGGATTGTTCTCGGGCGTTG
CTCGGACATTCTGCGTCCTCCTGGGATCGTCGGGTATGAAGATCGACAAC
CAAGGAATGGGCACCGTCGTAGAAGCGAGGAAGGCCCTCGGCCAGAAGGC
CGCGGCGGAGGCGGACGGGGGTGGTTATGAAGCGGGTTCCACAGAAGCAG
TGGAGGTTGAGGAAGGGGGGGCGGATGCTTCGGTGCTCACATATGGATCC
AGGATTCCCAAGCGCAAGGCCGTCCTATCAGTGTGCATCATGGAGGAGGC
AGAGGACGAGCCCATGAATGGGGACCAGTGCTCATCTTCTGACAGCAGCA
GCAGCGGCGGCGGCGACGAGGGCGTCGGCACAGGCGGGCAGGAGGGCGGC
GGCGCTGATGGAGATGGCAGCGGCGGCGGTGGCGACGGCGACGGCGACGG
GAGGGGCCCCGATAGGGCCACCAATGGCCATCGCAGCCCGAGCCCCAAGC
GACCGCGGCTTGCTGACGGTGCATCGGAGTTGCAAGGCAGAGGCGACAGG
GAGGGGTGCACTTGTGGTGAGGAGTCGGCCGGCGCCCGGATCTGTGCGTG
TCGCCAGACCCTGCGTGCCCAGGGCATGGGGCCTCCGGACGAGCCCATGA
ATGGGGACCAGTGCTCATCTTCTGACAGCAGCAGCAGCGGCGGCGGCGAC
GAGGGCGTCGGCACAGGCGGGCAGGAGGGCGGCGGCGCTGATGGAGATGG
CAGCGGCGGCGGTGGCGACGGCGACGGCGACGGGAGGGGCCCCGATAGGG
CCACCAATGGCCATCGCAGCCCGAGCCCCAAGCGACCGCGGCTTGCTGAC
GGTGCATCGGAGTTGCAAGGCAGAGGCGACAGGGAGGGGTGCACTTGTGG
TGAGGAGTCGGCCGGCGCCCGGATCTGTGCGTGTCGCCAGACCCTGCGTG
CCCAGGGCATGGGGCCTCCG
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