mRNA_S-ischiensis_contig8.19450.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19450.1
Unique NamemRNA_S-ischiensis_contig8.19450.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1549264..1551555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size808
Cds size807
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19450.1prot_S-ischiensis_contig8.19450.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1549264..1551554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817258.8533273-CDS-S-ischiensis_contig8:1549263..15493221622817258.8533273-CDS-S-ischiensis_contig8:1549263..1549322Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1549264..1549322 +
1695740975.8894458-CDS-S-ischiensis_contig8:1549263..15493221695740975.8894458-CDS-S-ischiensis_contig8:1549263..1549322Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1549264..1549322 +
1622817258.864014-CDS-S-ischiensis_contig8:1549963..15502731622817258.864014-CDS-S-ischiensis_contig8:1549963..1550273Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1549964..1550273 +
1695740975.8995752-CDS-S-ischiensis_contig8:1549963..15502731695740975.8995752-CDS-S-ischiensis_contig8:1549963..1550273Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1549964..1550273 +
1622817258.874298-CDS-S-ischiensis_contig8:1550759..15508841622817258.874298-CDS-S-ischiensis_contig8:1550759..1550884Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1550760..1550884 +
1695740975.9115415-CDS-S-ischiensis_contig8:1550759..15508841695740975.9115415-CDS-S-ischiensis_contig8:1550759..1550884Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1550760..1550884 +
1622817258.8847764-CDS-S-ischiensis_contig8:1551241..15515541622817258.8847764-CDS-S-ischiensis_contig8:1551241..1551554Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1551242..1551554 +
1695740975.9277394-CDS-S-ischiensis_contig8:1551241..15515541695740975.9277394-CDS-S-ischiensis_contig8:1551241..1551554Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1551242..1551554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19450.1

>prot_S-ischiensis_contig8.19450.1 ID=prot_S-ischiensis_contig8.19450.1|Name=mRNA_S-ischiensis_contig8.19450.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=269bp
RKELLERLKQDLGLNAFIQRYDAYLTLLVTHLRNGGHNQGNGPRGGGGGG
GGGEGAETRGGVAVGGGHAFGAAAGGGYGVSPWRGLVDGSGPVGDVVVGF
SEGCSYMAPFLRELFPEVFPWARVHVVKNPDPSPQPGTGRAPLVYVANAL
DGNCWAGWDAPCRQRFLDLSAPYRDAGALIILASGEAWDLSSIPAGSVDL
ALLASARPDHYPRGVPPGPRRILSPPLVTCFGERALNTPAELLAGSADPV
RAAGGAVREPAGLGAGEGA
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mRNA from alignment at S-ischiensis_contig8:1549264..1551555+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19450.1 ID=mRNA_S-ischiensis_contig8.19450.1|Name=mRNA_S-ischiensis_contig8.19450.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2292bp|location=Sequence derived from alignment at S-ischiensis_contig8:1549264..1551555+ (Schizocladia ischiensis KU_0333)
CGCAAGGAGCTGCTGGAGCGGTTGAAGCAGGACCTGGGCCTGAACGCCTT
CATCCAGAGGTGAAAACCCGTGGTGTCGGCGCCCAAGGTGGTCCTCCACC
ACGGCTGCCGCATCCTCTTCATCTACTGTACTATATGCGGGAATCGGCCT
CACCCTCTCCGTCGGTGGAAAAATATCATCGTTTTAGCCACGCATTTGCT
GTCCGTGCTCTCGCGGGATCAGACGGGTGTCCCGGGGCGGGCCGTTTTTT
GGGGGGGTTCGAGGGGGCTGTGGACAGTTGGGGTTCTCGAGGCGGTGGTC
AGAGAGCGTACTGCTGTACAGTACAATACAGCAGGTGTACCGTATTGCTG
TACCAGAGAGTACCACAATGTGTTTCTCAGCTCAGTTTCACACGCCCTTT
GTCACTGCGGCCCCCAAGACATGGACTTGTACTGTTCCCGGGTCATATGC
TTGGGCCATGCTTTGGCCATCCCGCACATGTGAGAAACTGCATGCCGGGC
CTCGCTGCTCAGCACGCGCGGGTTGCATGCCCTGTACTACTCGCACTAGT
ACGAGTACTCGATTGCACTTGCACTACTGTACAGTAGTACTCGTACAGCT
CTAGTCCAGCCTCTCCAGCAGCAGAGAGGACACAGTGCTCCGTAGAACCC
CCCCATCGTTTTCTGCAAAGGCAAGTCATGCGCCATGCCCTGCCCCCCAG
GTACGACGCCTACCTCACCCTCCTGGTGACACATCTAAGAAACGGCGGAC
ACAACCAAGGCAACGGGCCCCGCGGCGGCGGCGGTGGCGGCGGCGGCGGC
GAGGGGGCGGAGACCCGCGGGGGCGTGGCAGTTGGTGGTGGGCACGCGTT
CGGGGCGGCGGCAGGCGGCGGTTACGGGGTGTCGCCCTGGCGTGGCCTGG
TGGACGGGTCGGGGCCTGTGGGGGACGTGGTGGTGGGCTTCAGCGAGGGG
TGCTCGTACATGGCGCCCTTCCTAAGGGAGCTCTTCCCGGAGGTCTTCCC
CTGGGCCAGGGTGCGTGCGGCGGGGACGGGGCGCATGGTTCGGTTCGTAC
GTGGCGGACTGTCTGTCCCCGGGGCTTTTGCGGCCCTCATATGTATCGAA
GAGGGATGAGGTAGATGACCATGCCGCTGCTGCGTACTCGTAAACGGGCA
GAGAGAGGGGCGGGTTCATCATGGCCCGTGACGCATTTATGATGCAACCA
ATGGCACTCTGCAATCCACTCCCTTACTCCCCAAGCGCCCTCCCTCCCTC
CCTCCCCCCTCCCTCCCTCCCTCCCTCCCTCTTTCCCTCCTTCTGTCACT
CTCTCGTTCCCTCCCTTGCCCCCCCGCCCTCCCGCTCTCACTCCCTGTCT
TCCTCACCTCGCCTCCCTCCCTCCCTCCCTCCCTCGCTTCGTCCCTCCCT
CCTCTCCGGCTACCTCCCTGCCTGCCCGTTCGCCTCCCTCCCCACCCGCT
CCCCCTGCACCCTCCGTCATACTGGCCTCTGCCTGTGTTTTGGCAGGTCC
ATGTTGTGAAGAACCCAGACCCGAGCCCTCAGCCCGGCACAGGTCGAGCC
CCCCTGGTGTACGTGGCTAACGCCCTGGACGGCAATTGCTGGGCGGGCTG
GGACGCTCCCTGTCGCCAGAGGTGGGTGCCGCCGCGTCATTTTCCCGAGC
TACTCTGCTGTACAGTAGGTTGCTTGGAGAGGTAGCTAAAGAGCTTGGGA
ACCTCAAGCACTGTAGGTGTTACAGGTGCTATGCCCGGGGGTAGCCATGC
TCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCCCGCCGTGCTGCTATTG
CTGCCGCTGCTGCTACTGCCACGACAGTATACGTGGTGCCTCTTCCAGCG
GCACAAGGGTCCACTCACCCGCACGCCACCACGCAAGAACCCACCACTGC
CCCCCCTTCCCACCAACTAGACACACAAACAAGTGTTTGGCAACACCAAA
ACCAACCAGAGACCCCCCCTCCGCTCAGGTTCCTGGATCTCTCCGCCCCG
TACCGCGACGCGGGCGCCCTCATCATCCTGGCCAGCGGCGAGGCCTGGGA
CCTCTCCTCCATCCCCGCGGGGTCCGTCGACCTCGCGCTCCTTGCCAGCG
CCCGCCCCGACCACTACCCCCGGGGGGTGCCCCCGGGCCCGAGGCGCATC
CTCTCCCCGCCCCTCGTCACCTGCTTCGGCGAGCGCGCCCTCAACACCCC
CGCCGAGCTCCTGGCGGGCAGCGCCGACCCCGTACGGGCGGCCGGCGGTG
CCGTGCGGGAGCCCGCGGGGCTGGGGGCGGGGGAAGGGGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1549264..1551555+

>mRNA_S-ischiensis_contig8.19450.1 ID=mRNA_S-ischiensis_contig8.19450.1|Name=mRNA_S-ischiensis_contig8.19450.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1614bp|location=Sequence derived from alignment at S-ischiensis_contig8:1549264..1551555+ (Schizocladia ischiensis KU_0333)
CGCAAGGAGCTGCTGGAGCGGTTGAAGCAGGACCTGGGCCTGAACGCCTT
CATCCAGAGCGCAAGGAGCTGCTGGAGCGGTTGAAGCAGGACCTGGGCCT
GAACGCCTTCATCCAGAGGTACGACGCCTACCTCACCCTCCTGGTGACAC
ATCTAAGAAACGGCGGACACAACCAAGGCAACGGGCCCCGCGGCGGCGGC
GGTGGCGGCGGCGGCGGCGAGGGGGCGGAGACCCGCGGGGGCGTGGCAGT
TGGTGGTGGGCACGCGTTCGGGGCGGCGGCAGGCGGCGGTTACGGGGTGT
CGCCCTGGCGTGGCCTGGTGGACGGGTCGGGGCCTGTGGGGGACGTGGTG
GTGGGCTTCAGCGAGGGGTGCTCGTACATGGCGCCCTTCCTAAGGGAGCT
CTTCCCGGAGGTCTTCCCCTGGGCCAGGGTACGACGCCTACCTCACCCTC
CTGGTGACACATCTAAGAAACGGCGGACACAACCAAGGCAACGGGCCCCG
CGGCGGCGGCGGTGGCGGCGGCGGCGGCGAGGGGGCGGAGACCCGCGGGG
GCGTGGCAGTTGGTGGTGGGCACGCGTTCGGGGCGGCGGCAGGCGGCGGT
TACGGGGTGTCGCCCTGGCGTGGCCTGGTGGACGGGTCGGGGCCTGTGGG
GGACGTGGTGGTGGGCTTCAGCGAGGGGTGCTCGTACATGGCGCCCTTCC
TAAGGGAGCTCTTCCCGGAGGTCTTCCCCTGGGCCAGGGTCCATGTTGTG
AAGAACCCAGACCCGAGCCCTCAGCCCGGCACAGGTCGAGCCCCCCTGGT
GTACGTGGCTAACGCCCTGGACGGCAATTGCTGGGCGGGCTGGGACGCTC
CCTGTCGCCAGAGGTCCATGTTGTGAAGAACCCAGACCCGAGCCCTCAGC
CCGGCACAGGTCGAGCCCCCCTGGTGTACGTGGCTAACGCCCTGGACGGC
AATTGCTGGGCGGGCTGGGACGCTCCCTGTCGCCAGAGGTTCCTGGATCT
CTCCGCCCCGTACCGCGACGCGGGCGCCCTCATCATCCTGGCCAGCGGCG
AGGCCTGGGACCTCTCCTCCATCCCCGCGGGGTCCGTCGACCTCGCGCTC
CTTGCCAGCGCCCGCCCCGACCACTACCCCCGGGGGGTGCCCCCGGGCCC
GAGGCGCATCCTCTCCCCGCCCCTCGTCACCTGCTTCGGCGAGCGCGCCC
TCAACACCCCCGCCGAGCTCCTGGCGGGCAGCGCCGACCCCGTACGGGCG
GCCGGCGGTGCCGTGCGGGAGCCCGCGGGGCTGGGGGCGGGGGAAGGGGC
GGTTCCTGGATCTCTCCGCCCCGTACCGCGACGCGGGCGCCCTCATCATC
CTGGCCAGCGGCGAGGCCTGGGACCTCTCCTCCATCCCCGCGGGGTCCGT
CGACCTCGCGCTCCTTGCCAGCGCCCGCCCCGACCACTACCCCCGGGGGG
TGCCCCCGGGCCCGAGGCGCATCCTCTCCCCGCCCCTCGTCACCTGCTTC
GGCGAGCGCGCCCTCAACACCCCCGCCGAGCTCCTGGCGGGCAGCGCCGA
CCCCGTACGGGCGGCCGGCGGTGCCGTGCGGGAGCCCGCGGGGCTGGGGG
CGGGGGAAGGGGCG
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