mRNA_S-ischiensis_contig8.19444.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19444.1
Unique NamemRNA_S-ischiensis_contig8.19444.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1489687..1493119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size540
Cds size540
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19444.1prot_S-ischiensis_contig8.19444.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1489687..1493119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817258.6817954-CDS-S-ischiensis_contig8:1489686..14897101622817258.6817954-CDS-S-ischiensis_contig8:1489686..1489710Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1489687..1489710 -
1695740975.7564898-CDS-S-ischiensis_contig8:1489686..14897101695740975.7564898-CDS-S-ischiensis_contig8:1489686..1489710Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1489687..1489710 -
1622817258.6947768-CDS-S-ischiensis_contig8:1491407..14915601622817258.6947768-CDS-S-ischiensis_contig8:1491407..1491560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1491408..1491560 -
1695740975.766627-CDS-S-ischiensis_contig8:1491407..14915601695740975.766627-CDS-S-ischiensis_contig8:1491407..1491560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1491408..1491560 -
1622817258.712953-CDS-S-ischiensis_contig8:1492756..14931191622817258.712953-CDS-S-ischiensis_contig8:1492756..1493119Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1492757..1493119 -
1695740975.7773027-CDS-S-ischiensis_contig8:1492756..14931191695740975.7773027-CDS-S-ischiensis_contig8:1492756..1493119Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1492757..1493119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19444.1

>prot_S-ischiensis_contig8.19444.1 ID=prot_S-ischiensis_contig8.19444.1|Name=mRNA_S-ischiensis_contig8.19444.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=180bp
MPSQVRDSSPGRGVPSGKLKMLALRPLGGARAWSLRSAACCCLLRLSLAF
RPPGPCPGFAPMHSSSRQKIGSHRIMTVWGAWGPRARVDAGLQSICPASG
PTRGMIVMGKGLRRHKAKKLQAANAPRKQPEARGGKAAAAAVPVDMDPSS
LEGYLRLVSHFETVKAPKRLAQAVADAKQK
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mRNA from alignment at S-ischiensis_contig8:1489687..1493119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19444.1 ID=mRNA_S-ischiensis_contig8.19444.1|Name=mRNA_S-ischiensis_contig8.19444.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3433bp|location=Sequence derived from alignment at S-ischiensis_contig8:1489687..1493119- (Schizocladia ischiensis KU_0333)
ATGCCTTCGCAGGTGCGTGACTCCAGCCCAGGGAGGGGAGTGCCGAGCGG
CAAACTGAAGATGTTGGCATTGCGACCCCTTGGGGGCGCCAGGGCTTGGT
CCCTGCGAAGCGCCGCATGTTGCTGTCTGCTTCGCCTCTCCCTGGCCTTT
CGGCCGCCAGGGCCTTGTCCGGGATTCGCCCCAATGCACTCCTCGAGTCG
CCAAAAAATTGGCAGTCACCGTATCATGACGGTCTGGGGCGCCTGGGGCC
CCAGGGCGAGGGTAGACGCAGGCTTGCAGAGCATATGCCCCGCCAGTGGT
CCCACGAGAGGCATGATCGTTATGGGGAAGGGGTTGAGGCGGCACAAGGC
TAAGAAATTGCAGGTGGGTGTGCCGGTACTGGCCGGCATTTGTGGCTGCA
ACCTGCTGCTTGTGCGGTCGCAACGTTTTCTCGGTTGCAACCGGGAAAGA
GTCATGTGACCGATGGCGCAGGCCGCCGTCCGGCACCCCTTCTGGTTCGT
TGTATGGATGCAGGGGGTTGCTGGTAGTTGTGGTCGCAGGTGGAACTTGT
GCACACGCTGATGGTCGTCTTGCTGCACAGTGGCCATGTATGACGGGTGA
CCAGGTGAGCGGACTTATGGTGCACACGGAAGTGTCGCGGGTTGCCATGC
ACAAGCTTTCATTTTACATATATGTGTGGATGCTTTCAGTCTGGCAAGTT
CTATTTCTCGGAAGGGATAGCTTCGAAGCACCAGAACTACTTCGAAGTAC
GACACGGTGTACTGTACTTCGAGTCCAGTGCTTACTGTGGAACCATCTGC
GTAGAGCAAATAGTACTTCGAAGCATACAACATTAGATACCGCTCCGGTG
AGGCAAACGAATTTTAAATTGAGATGGGGCTTCGAAGGTCAGGATTGTAC
GTGCCGCCGGTAGTGGGCATGGCGTTCAAGGCAATGCGTTCATCCAGTGG
CAGCCAGTTGCAAACGGACAGCGTGACCACTACTTAGAGCATGTTTTGAA
GGACACACACGCACTTATTTACCGCGCTGGTTGAGTTTCCAGCCGGAAGG
CCCGCGGATGGATGGAACAGTGGCATGCCGTCCTCGCTCGCGTGTGCACG
CGTGCATACATGGCACGCACGCCTGCTCCACCCCGCCGCTGGCACCCTTC
CTTCTCGTAAGTAATTTTGCCTCTCCGTGTGTCCATACAGTACAGGAGCT
ACTTACTATCAAGCACTCCTCGCCGCCCTGGGTCTGCCAGGGCCGGGAGG
GAGCCCGCCTCTTCTCGGACGAGGCGCCGGTCAATGGTCTCGGGACGTGT
CGCAGGCCGTCAACGCGTTGGGTATATATATATATACTTTGATGTATGTA
CACACGTTGTGCTTGCCGTAGTCCCGAGACCATTTACCACGCGCCTCGAT
CTGTTGGGTGCACACGCTATCCAAAGTACACTATCCAGCAACAGGTGCAG
AGGTGACAAAAATGCCAGCGGTCGTTTCAGGCATACTCGACACACCGTGC
CCTCTCTCATCTGCCCGTGTCTGCTGTTGCCACGCGCCCCGGTCTCCGAA
CACACGCAGGCTGCCAACGCTCCCCGCAAGCAGCCGGAGGCCCGGGGGGG
GAAGGCGGCGGCGGCCGCCGTGCCCGTAGATATGGACCCCTCCTCGCTGG
AGGGCTACTTGCGGCTGGTCTCCCACTTTGAGACCGTCAAGGCGCCCAAG
AGACTGGCCCAGGTGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGATCCCCCCCCCTCCCCCCCCCCAGTGCGTTGACCATCAGCCAT
GGTTGTGCCAGTTGCGAAATAGTACTTCGAAGCGTGAATTTGCGGATGCG
ATTGTAATGCTCTACTCTACTCGAGCTAGTACAATTGGGAGCGCAAGCCT
GGCAAGAACTTTGGGGCGTCGGCCACGCACACTGGGCGATGGCCACTCTG
TGGAGTGCTTAGTGCCACTGTATTGTACTGTGTACTGTATGTACAGTACT
CTACGCCGATAGATGCGGTTCATTGTGCTGTAGGCATGGATATACTCGTA
CGTCAGAGCAGTGAAGAAGTACTCATACGTGTGCACAGCAGCCATTTAGT
AGAGCTGCGGACCAGCACAGCCGGTCGGCTAAAGTGGTATCCAGCATCGC
GGCCGGTTCGGTTCGGTAGTTTGTTTTAGCGGTAAGTTTTTGTGCGATAA
TGGCTATATTTCGGGCCGAACCGGTGACAACGGTAATGTCACTGTCCACC
GGCTATATCGAACGTCGAAGTATGCACGATCTCAAATGAGAAAAAAAAGA
CGGAGAAACCGGGCAAGTGAGGGCTATGAATGAGAGTTTCGCGAGGAATC
AGCGTGCCGCCGCCGTTTCCTGCTGGTGGTGGTGTCGTCCTGATATGATG
TGATGTGATGTGATTTGATGTGATGTGGTGTGATGTGACGCGTACTCTAT
TGCGCCGTGGTACGCTGACATCACGTCACATCACCGTCTGCAGGGTTAGA
TGTGATGTGATGCGACATGACGTGGTGTGATGTGATGTGATGGGACATGT
ACTCGTGCGCCATGGTACGCTGACATCGCATCACATCACATCCCAGTATG
TCGGCTTAGATGTGATGTGATGTGACATGGTGTGGTGATGTGATGTGACG
TGTACGCTAGTGTGTCGTGGTGCGCTGATATCACATCACAGCCTGTAGGT
TTAGATGTAATGTGATGTGACATGAAGTGGTGTGGCACATCACACCGCAT
CACATCACATCACAGTCTGTAGGCTTATCGAGGTGTCAAGGGTGCCGTCG
TTCTCTGAAGGGTTAGCGTCCAGGGCCGCCTGTGGTGCTTGCGGCGCCCT
CAGCCGGCTGCACAGCCGGGGCTACTGCGTACTTCGAAGTACTCAAGAGT
TGCTGCGCGCTTGCCGCCCTGCCCTGGAGGAAATTAACATGTGACCGACT
CAAGGACCCAAGTTGATCTATCGTGACTTTCACTTTGGCTTGGCTTGTCT
TGACTTGGCCCTGTTCCCACGCCCCGGCCTACGCCGATGCCCCCGTCCCC
CCCCCGGCCGGCGCGGCGCCGCTCGCGTGCCCCACATCGGCGGCTGCCTA
CAGTATTTGTTCGTCCCTAGTAGAGCACTCGTATTCGAGTACAGTATTTC
GCGGCGGCACTATGGCGAAGTAGGTACTGCTGCAGCACGTGCTTCCAAGT
AGCATACTTACCGTGCACCGCAAGTACTTCCAAGTACTTGTACTGCAAGT
AGATGTTTCCTAGCTTCACTCAGTCCGGTGCCCCTGAGCACCCCGGCCGC
CCGACCGCCCGCGCTGCAAGCTGTACAAACGCGACGTCCGCTCTCCACTT
GCTCGACAGGCCGTGGCTGACGCCAAGCAGAAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1489687..1493119-

>mRNA_S-ischiensis_contig8.19444.1 ID=mRNA_S-ischiensis_contig8.19444.1|Name=mRNA_S-ischiensis_contig8.19444.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1080bp|location=Sequence derived from alignment at S-ischiensis_contig8:1489687..1493119- (Schizocladia ischiensis KU_0333)
ATGCCTTCGCAGGTGCGTGACTCCAGCCCAGGGAGGGGAGTGCCGAGCGG
CAAACTGAAGATGTTGGCATTGCGACCCCTTGGGGGCGCCAGGGCTTGGT
CCCTGCGAAGCGCCGCATGTTGCTGTCTGCTTCGCCTCTCCCTGGCCTTT
CGGCCGCCAGGGCCTTGTCCGGGATTCGCCCCAATGCACTCCTCGAGTCG
CCAAAAAATTGGCAGTCACCGTATCATGACGGTCTGGGGCGCCTGGGGCC
CCAGGGCGAGGGTAGACGCAGGCTTGCAGAGCATATGCCCCGCCAGTGGT
CCCACGAGAGGCATGATCGTTATGGGGAAGGGGTTGAGGCGGCACAAGGC
TAAGAAATTGCAGATGCCTTCGCAGGTGCGTGACTCCAGCCCAGGGAGGG
GAGTGCCGAGCGGCAAACTGAAGATGTTGGCATTGCGACCCCTTGGGGGC
GCCAGGGCTTGGTCCCTGCGAAGCGCCGCATGTTGCTGTCTGCTTCGCCT
CTCCCTGGCCTTTCGGCCGCCAGGGCCTTGTCCGGGATTCGCCCCAATGC
ACTCCTCGAGTCGCCAAAAAATTGGCAGTCACCGTATCATGACGGTCTGG
GGCGCCTGGGGCCCCAGGGCGAGGGTAGACGCAGGCTTGCAGAGCATATG
CCCCGCCAGTGGTCCCACGAGAGGCATGATCGTTATGGGGAAGGGGTTGA
GGCGGCACAAGGCTAAGAAATTGCAGGCTGCCAACGCTCCCCGCAAGCAG
CCGGAGGCCCGGGGGGGGAAGGCGGCGGCGGCCGCCGTGCCCGTAGATAT
GGACCCCTCCTCGCTGGAGGGCTACTTGCGGCTGGTCTCCCACTTTGAGA
CCGTCAAGGCGCCCAAGAGACTGGCCCAGGCTGCCAACGCTCCCCGCAAG
CAGCCGGAGGCCCGGGGGGGGAAGGCGGCGGCGGCCGCCGTGCCCGTAGA
TATGGACCCCTCCTCGCTGGAGGGCTACTTGCGGCTGGTCTCCCACTTTG
AGACCGTCAAGGCGCCCAAGAGACTGGCCCAGGCCGTGGCTGACGCCAAG
CAGAAAGCCGTGGCTGACGCCAAGCAGAAA
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