mRNA_S-ischiensis_contig8.19439.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19439.1
Unique NamemRNA_S-ischiensis_contig8.19439.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1441412..1443201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size598
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19439.1prot_S-ischiensis_contig8.19439.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1441525..1443181 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817258.5608175-UTR-S-ischiensis_contig8:1441411..14415241622817258.5608175-UTR-S-ischiensis_contig8:1441411..1441524Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1441412..1441524 -
1695740975.6632538-UTR-S-ischiensis_contig8:1441411..14415241695740975.6632538-UTR-S-ischiensis_contig8:1441411..1441524Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1441412..1441524 -
1622817258.6061919-UTR-S-ischiensis_contig8:1443181..14432011622817258.6061919-UTR-S-ischiensis_contig8:1443181..1443201Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1443182..1443201 -
1695740975.711775-UTR-S-ischiensis_contig8:1443181..14432011695740975.711775-UTR-S-ischiensis_contig8:1443181..1443201Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1443182..1443201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817258.574247-CDS-S-ischiensis_contig8:1441524..14416311622817258.574247-CDS-S-ischiensis_contig8:1441524..1441631Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1441525..1441631 -
1695740975.674776-CDS-S-ischiensis_contig8:1441524..14416311695740975.674776-CDS-S-ischiensis_contig8:1441524..1441631Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1441525..1441631 -
1622817258.5850463-CDS-S-ischiensis_contig8:1442470..14426761622817258.5850463-CDS-S-ischiensis_contig8:1442470..1442676Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1442471..1442676 -
1695740975.687132-CDS-S-ischiensis_contig8:1442470..14426761695740975.687132-CDS-S-ischiensis_contig8:1442470..1442676Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1442471..1442676 -
1622817258.5956163-CDS-S-ischiensis_contig8:1443029..14431811622817258.5956163-CDS-S-ischiensis_contig8:1443029..1443181Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1443030..1443181 -
1695740975.6967845-CDS-S-ischiensis_contig8:1443029..14431811695740975.6967845-CDS-S-ischiensis_contig8:1443029..1443181Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1443030..1443181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19439.1

>prot_S-ischiensis_contig8.19439.1 ID=prot_S-ischiensis_contig8.19439.1|Name=mRNA_S-ischiensis_contig8.19439.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=155bp
MKFDPFHNPFEHDRRCREVHGVDGGTGQVLTSWPSPPTSCSVVLPTQGLT
VLLHPRAVPGPGQAPQVPGPLPPGRPGQAPGGLLLHVCAGPHGPRAERPG
GDALPGGPPREEAAADLRPGRGGGDRGHLAGQAAPPRDLQGLQPHTPTVR
PPPA*
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mRNA from alignment at S-ischiensis_contig8:1441412..1443201-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19439.1 ID=mRNA_S-ischiensis_contig8.19439.1|Name=mRNA_S-ischiensis_contig8.19439.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1790bp|location=Sequence derived from alignment at S-ischiensis_contig8:1441412..1443201- (Schizocladia ischiensis KU_0333)
CTTGGCCACCGCGGGGTGAAATGAAGTTTGACCCCTTCCACAACCCATTC
GAGCATGACCGGCGCTGCAGAGAAGTCCACGGCGTGGACGGCGGGACCGG
GCAGGTGCTCACTTCGTGGCCGAGCCCCCCCACCAGCTGCAGCGTCGTCC
TCCCTACCCAGGGCCTAACGGTAAGCATGGACTGTTCAACCTCGCCATCT
CCCTCCTCCTCCTCCTCCTCCTCCTCGTCCTCCTCCTCCTCCTCCATCTT
TCAAATCGGCAGCAGTTCAGCAGTAGCACGGCCTACGAGCTCCGCAAACC
CGCCAACTGTGCGTGCTTTGACCACATAGGCAGCAGCAGCAGCAGCACCA
CCACCACCACCAGCATGGCCGGCAGACGTGCCAACCCCACCAGCCCAAGG
ACTCGTGTGCAAAAGCCCCACCATCGCAGCAGCGCCAGCCAATGTAGCCC
TCGCCTTGCTCGCCTAAAAACACCTGTTTTGCACTCCCGCGCAGGCCCTC
ATGATCCACCTCCCCAAGTGCGCCACCTCCTCCACCCGCGAGCAGTTCCG
GGGCCGGGGCAAGCCCCTCAGGTTCCTGGGCCCCTGCCTCCTGGTCGACC
CGGCCAGGCTCCGGGCGGCCTACTCCTTCACGTTTGTGCGGGACCCCATG
GCCCGCGCGCGGAGCGGCCTGGTGGAGATGCTCTTCCGGGAGGCCCTCCG
CGAGAAGAGGCGGCCGCAGACCTTCGTCCAGGTGATTCTCATGCCCTACT
TCCAATACGAGAACAGTCAATCCCACGCACATGCGATTCTACCTCGTTAC
AATTTGTATGAATCACCGCCCTGCTGCCGCTGCACCCCCACTATTGTACA
GTTACGGTTGTCATCATGACTATTGTAGCTTTGCTATACTGTACTCGAGT
ACAGCTAGTGGTGGATGTTTTCCCTCTTTGTTAATTTTCTTTTGGAGCTG
TGGACCGGGGCCGGGATTTTGCCGGTCGGTTCCGATTCACCGGCCGACCG
GTTAACCCGGCCGAAGCCTCACTGCTGTTTTGTTCTCATTTGAGATCGTG
CATACTTTGACATGCGATATACGTGTATAGCCGGTGCACGGCAGCGTTGC
TGCTGTCGCCGGTTTTGACTGAAACATGGCCGCCATTGTGCAAAAACAAA
TGCCGATACAAAACAAACGGCCGAACCGAACCGGCTCCGATACCGGTTAC
AATTTCACCCGGGCCGGCCTTGCCAATTCACTGCTCCATCTTTTCGGCAT
CACGGCTGTGTGTCATCGTGTGTCGCGTAGGTAACTTGAGGAAACCGAAC
CCAGTACTCGTACATGGAACTCGCCGAGTGGACACAAACCCCGATGGCAA
ACCATCTACCACCGGAAGTAGTCATTGCCTCGGGACTAATGTAATGGTCG
CTGACCTTCCTCCCCTCCCTCCACCCTCCCTCCCGCCGTCCCTCCCGCCG
GACCGCCCGCCCGCCCTCCCTCCCTCCCTCCCTCACTCTGTCCCCGCCCG
CTCCCCCCCCTCCCTCCTTCCATCCCCCCCCTTCCCCTCCCTCCTCCCCT
CGCTCTCACCCTCTGACCAGGGCGAGGTGGAGGCGATCGTGGACACTTGG
CTGGGCAAGCTGCACCGCCGCGAGACCTTCAAGGACTCCAACCACATACA
CCCACAGTCCGCCCTCCTCCAGCTTAACCTGGGGCCCGGCGGCGGCAAGG
GCGGCAAACGCAAACAAAGAAGGACGCTGTACCCGAAGTTCTTCGGCCGG
GTCGAGCAGTTTGAAGAGTACTGGGCGGTGCTGGCGGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1441412..1443201-

>mRNA_S-ischiensis_contig8.19439.1 ID=mRNA_S-ischiensis_contig8.19439.1|Name=mRNA_S-ischiensis_contig8.19439.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=930bp|location=Sequence derived from alignment at S-ischiensis_contig8:1441412..1443201- (Schizocladia ischiensis KU_0333)
ATGAAGTTTGACCCCTTCCACAACCCATTCGAGCATGACCGGCGCTGCAG
AGAAGTCCACGGCGTGGACGGCGGGACCGGGCAGGTGCTCACTTCGTGGC
CGAGCCCCCCCACCAGCTGCAGCGTCGTCCTCCCTACCCAGGGCCTAACG
GTATGAAGTTTGACCCCTTCCACAACCCATTCGAGCATGACCGGCGCTGC
AGAGAAGTCCACGGCGTGGACGGCGGGACCGGGCAGGTGCTCACTTCGTG
GCCGAGCCCCCCCACCAGCTGCAGCGTCGTCCTCCCTACCCAGGGCCTAA
CGGTCCTCCTCCACCCGCGAGCAGTTCCGGGGCCGGGGCAAGCCCCTCAG
GTTCCTGGGCCCCTGCCTCCTGGTCGACCCGGCCAGGCTCCGGGCGGCCT
ACTCCTTCACGTTTGTGCGGGACCCCATGGCCCGCGCGCGGAGCGGCCTG
GTGGAGATGCTCTTCCGGGAGGCCCTCCGCGAGAAGAGGCGGCCGCAGAC
CTTCGTCCAGCCTCCTCCACCCGCGAGCAGTTCCGGGGCCGGGGCAAGCC
CCTCAGGTTCCTGGGCCCCTGCCTCCTGGTCGACCCGGCCAGGCTCCGGG
CGGCCTACTCCTTCACGTTTGTGCGGGACCCCATGGCCCGCGCGCGGAGC
GGCCTGGTGGAGATGCTCTTCCGGGAGGCCCTCCGCGAGAAGAGGCGGCC
GCAGACCTTCGTCCAGGGCGAGGTGGAGGCGATCGTGGACACTTGGCTGG
GCAAGCTGCACCGCCGCGAGACCTTCAAGGACTCCAACCACATACACCCA
CAGTCCGCCCTCCTCCAGCTTAAGGCGAGGTGGAGGCGATCGTGGACACT
TGGCTGGGCAAGCTGCACCGCCGCGAGACCTTCAAGGACTCCAACCACAT
ACACCCACAGTCCGCCCTCCTCCAGCTTAA
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