mRNA_S-ischiensis_contig8.19437.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19437.1
Unique NamemRNA_S-ischiensis_contig8.19437.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19437.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 5.410e-34
Identity = 76/111 (68.47%), Postives = 90/111 (81.08%), Query Frame = 1
Query:   10 GGLGGLEDWAATLDLSQVTEACCRAALEGERANVILVRRCVEELGGVPSMLPVFDTTNRPEEKTVITAVAHLCFRLLDSSAEIRSSIRLQHAFRAHLMATGRADIVRRPRA 342
            GG G LEDW+A+LD S++TEA C+AAL+GERANV L R CV ELGGVPSML  FD+TNRPEEKT+IT VAHLC RLL+SSAEIRS+I +Q  +R+ L  TGR D+V R RA
Sbjct:  845 GGRGELEDWSASLDASKITEAECKAALDGERANVALARHCVAELGGVPSMLAPFDSTNRPEEKTIITVVAHLCARLLESSAEIRSTILVQRVYRSFLERTGRGDLVERARA 955          
BLAST of mRNA_S-ischiensis_contig8.19437.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 4.010e-31
Identity = 92/199 (46.23%), Postives = 112/199 (56.28%), Query Frame = 1
Query:   10 GGLGGLEDWAATLDLSQ-------------VTEACCRAALEGERANVILVRRCVEELGGVPSMLPVFDTTNRPEEKTVITAVAHLCFRLLDSSAEIRSSIRLQHAFRAHLMATGRADIVRRPRAQDQDQ------------------GQGRL-----VARGGGAETSKRLGGVAVGHEVLVSERQLAVARATVVVQRWW 498
            GG G LEDW+A+LD S+             +TEA C+AAL+GERANV L R CV ELGGVPSML  FD+TNRPEEKT+IT VAHLC RLL+SSAEIRS+I +Q  +R+ L  TGR D+V R RA                       G G         R G A  ++    V     + VSE+Q  V  A + +QRWW
Sbjct:  701 GGRGELEDWSASLDPSKEVSCCAAEVDQGCITEAECKAALDGERANVALARHCVAELGGVPSMLAPFDSTNRPEEKTIITVVAHLCARLLESSAEIRSTILVQRVYRSFLERTGRGDLVERARAAKAXXXXXXXXXXXXXXXXXXRAGDGAAPFTPPATRRGPAAVAEAAERVLPEQTMYVSEKQ-RVHLAALTIQRWW 898          
BLAST of mRNA_S-ischiensis_contig8.19437.1 vs. uniprot
Match: A0A835Z978_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z978_9STRA)

HSP 1 Score: 123 bits (309), Expect = 7.520e-25
Identity = 73/166 (43.98%), Postives = 102/166 (61.45%), Query Frame = 1
Query:   13 GLGGLEDWAATLDLSQVTEACCRAALEGERANVILVRRCVEELGGVPSMLPVFDTTNRPEEKTVITAVAHLCFRLLDSSAEIRSSIRLQHAFRAHLMATGRADIVRRPRAQDQDQGQGRLVARGGGAETSKRL---GGVAVGHEVLVSERQLAVARATVVVQRWWR 501
            G G    W   L+ SQVTE  C+AAL+ ER NV L  +CV+ LGGVP MLP+FD+T+ P+E+T++ A+A+L  RLL SSAEIR++  +Q  +RAHL +TGR ++V +P A       GRLV R       +RL   G  A G  +L+S++         + Q+WWR
Sbjct:  841 GSGNNNTWMLALEASQVTERDCKAALQRERQNVALFSKCVKALGGVPLMLPIFDSTDCPDERTIVAAIAYLASRLLASSAEIRATQTIQRTYRAHLKSTGREELVYKPTAVI----GGRLVVR-------RRLSLQGSEASGTMLLLSDKXXXXXXXXXI-QQWWR 994          
BLAST of mRNA_S-ischiensis_contig8.19437.1 vs. uniprot
Match: A0A7S2KPU1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KPU1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.000e-11
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   28 EDWAATLDLSQVTEACCRAALEGERANVILVRRCVEELGGVPSMLPVFDTTNRPEEKTVITAVAHLCFRLLDSSAEIRSSIRLQHAFR 291
            E W  ++    VT    +  +  ER N  L   C+ ELGG+P MLPVFDT N PEEK++I  VA+LC RL++SS EI +++ +Q  +R
Sbjct:  987 ERWGDSIFDESVTSDQFKDRILSERHNSSLANECMAELGGIPGMLPVFDTQNYPEEKSMIVCVAYLCSRLMESSQEILATLVIQDHYR 1074          
BLAST of mRNA_S-ischiensis_contig8.19437.1 vs. uniprot
Match: A0A7S4IHQ8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IHQ8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.920e-7
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   85 ALEGERANVILVRRCVEELGGVPSMLPVFDTTNRPEEKTVITAVAHLCFRLLDSSAEIRSSIRLQHAFRAH 297
            A+  ER N  L  + + ++GG+P MLP FD+ + PEEK++I  VA LC RL++SS EI ++I +Q  +R +
Sbjct: 1024 AISNERRNSNLANKRMLDIGGIPGMLPTFDSRDMPEEKSIILCVAFLCSRLMESSNEILATIAIQGCYRRY 1094          
BLAST of mRNA_S-ischiensis_contig8.19437.1 vs. uniprot
Match: A0A1E7EWK4_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EWK4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 9.620e-7
Identity = 28/69 (40.58%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   91 EGERANVILVRRCVEELGGVPSMLPVFDTTNRPEEKTVITAVAHLCFRLLDSSAEIRSSIRLQHAFRAH 297
            E ERAN     + ++ELGG+P M+P+ D+ N P+EK+++  +++LC RL++SS EI ++I +Q  +R +
Sbjct: 1168 ENERANWKKASKSMQELGGIPDMIPICDSRNPPDEKSMLLCLSYLCSRLMESSREIFATILIQACYRKY 1236          
BLAST of mRNA_S-ischiensis_contig8.19437.1 vs. uniprot
Match: A0A448Z627_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z627_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.440e-5
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   88 LEGERANVILVRRCVEELGGVPSMLPVFDTTNRPEEKTVITAVAHLCFRLLDSSAEIRSSIRLQHAFRAH 297
            LE ER N       +++LGG+P MLP+ D+ N P EK+++  + +LC RL++SS EI ++I +Q  +R +
Sbjct: 1138 LEKERINWRRASTSMQQLGGIPDMLPICDSENPPNEKSMLLCLTYLCSRLMESSQEIFAAILIQACYRKY 1207          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LLN9_ECTSI5.410e-3468.47Similar to asp (Abnormal spindle)-like, microcepha... [more]
A0A6H5KRH5_9PHAE4.010e-3146.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z978_9STRA7.520e-2543.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2KPU1_9STRA5.000e-1144.32Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S4IHQ8_9STRA1.920e-743.66Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1E7EWK4_9STRA9.620e-740.58Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A448Z627_9STRA1.440e-540.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1427801..1433396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue4.1e-34
Seed eggNOG ortholog2880.D8LLN9
Preferred nameASPM
KEGG koko:K16743,ko:K16774
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000922,GO:0001764,GO:0002052,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007405,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008283,GO:0008284,GO:0008406,GO:0008584,GO:0009786,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0016477,GO:0017145,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021537,GO:0021543,GO:0021872,GO:0021873,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030496,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0036445,GO:0036449,GO:0040007,GO:0040011,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045137,GO:0045177,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045769,GO:0046546,GO:0046661,GO:0048103,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051179,GO:0051225,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051653,GO:0051657,GO:0051661,GO:0051674,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0051961,GO:0051962,GO:0055057,GO:0060284,GO:0060322,GO:0060828,GO:0061351,GO:0061458,GO:0061842,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072686,GO:0072687,GO:0090263,GO:0090306,GO:0097150,GO:0097431,GO:0098590,GO:0098727,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140013,GO:1902692,GO:1903046,GO:1990752,GO:2000026,GO:2000177,GO:2000179,GO:2000241,GO:2000648
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759,KOG0165@1,KOG0165@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons6
Model size2706
Cds size2703
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19437.1prot_S-ischiensis_contig8.19437.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1427801..1433395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817258.4742827-CDS-S-ischiensis_contig8:1427800..14278601622817258.4742827-CDS-S-ischiensis_contig8:1427800..1427860Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1427801..1427860 +
1695740975.5846622-CDS-S-ischiensis_contig8:1427800..14278601695740975.5846622-CDS-S-ischiensis_contig8:1427800..1427860Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1427801..1427860 +
1622817258.485191-CDS-S-ischiensis_contig8:1428411..14285491622817258.485191-CDS-S-ischiensis_contig8:1428411..1428549Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1428412..1428549 +
1695740975.6056645-CDS-S-ischiensis_contig8:1428411..14285491695740975.6056645-CDS-S-ischiensis_contig8:1428411..1428549Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1428412..1428549 +
1622817258.495655-CDS-S-ischiensis_contig8:1429716..14299741622817258.495655-CDS-S-ischiensis_contig8:1429716..1429974Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1429717..1429974 +
1695740975.6180754-CDS-S-ischiensis_contig8:1429716..14299741695740975.6180754-CDS-S-ischiensis_contig8:1429716..1429974Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1429717..1429974 +
1622817258.506455-CDS-S-ischiensis_contig8:1430289..14305861622817258.506455-CDS-S-ischiensis_contig8:1430289..1430586Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1430290..1430586 +
1695740975.6287599-CDS-S-ischiensis_contig8:1430289..14305861695740975.6287599-CDS-S-ischiensis_contig8:1430289..1430586Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1430290..1430586 +
1622817258.5178924-CDS-S-ischiensis_contig8:1431054..14318511622817258.5178924-CDS-S-ischiensis_contig8:1431054..1431851Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1431055..1431851 +
1695740975.6396546-CDS-S-ischiensis_contig8:1431054..14318511695740975.6396546-CDS-S-ischiensis_contig8:1431054..1431851Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1431055..1431851 +
1622817258.5283694-CDS-S-ischiensis_contig8:1432242..14333951622817258.5283694-CDS-S-ischiensis_contig8:1432242..1433395Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1432243..1433395 +
1695740975.6512244-CDS-S-ischiensis_contig8:1432242..14333951695740975.6512244-CDS-S-ischiensis_contig8:1432242..1433395Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1432243..1433395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19437.1

>prot_S-ischiensis_contig8.19437.1 ID=prot_S-ischiensis_contig8.19437.1|Name=mRNA_S-ischiensis_contig8.19437.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=901bp
PGDGGLGGLEDWAATLDLSQVTEACCRAALEGERANVILVRRCVEELGGV
PSMLPVFDTTNRPEEKTVITAVAHLCFRLLDSSAEIRSSIRLQHAFRAHL
MATGRADIVRRPRAQDQDQGQGRLVARGGGAETSKRLGGVAVGHEVLVSE
RQLAVARATVVVQRWWRDTQDQRRALDRAQQEAEEEERRPGAAAAAAAAA
EEAGYAKAEAGAAVEEEEAATVVLQTWMRARLQRCWYRALCGQVAAATAL
QARARGFLARRHLATAAAAAAQIQHLVRCRAARRRLRLLAQQARRQREAA
EAQEAERSRQAAAAAEEEACAARMLQAFFSGVAARAQRWRALREAAAAAV
VVQAWWRGSSHRVKLRETARATVAVQAWWRGASRQAGLCETARAAVAAQA
WWRGARAAAEYRRARASAVALQGAWREYKRAREAFALRELRRAEAVETAA
AAVALQSWWRGVSARRGLWARARAAVAVQGWWRAVLAEARAREAAAAAVR
AAARVQGRWRAAHARARFLTAKQGAVQLQALGRGRAARATLLLTTRAAVA
LQAWWRGSLRRAELRDNCRAAVAVQAWWRGALSRAERRETARATVALQAW
WRGTWHRAERLETIRAAVVVQAWWRGATAWAALRETARAAVAVQAWWRGT
WAKLHENARAAGAVQAWWRGCSHRTKLRETARATVAVQAWWRGCSHRAKL
RETAWATVAVQAWWRGALHRAKLCETARAAVAVQAWWRGASHRAKLRETI
RVTVAVQAWWRGSSHRTQLSKTARAAVAVQAWWRGSLHRVRLRETARATV
AVQAWWRGVLHRAKLHKTARAAAAVQAWWRGTSCRTKLRETARAAVALQA
WWRGVSCRAALRETARAAVGVQARWRGVAARAAARETARAAVAVQAWWRG
A
back to top

mRNA from alignment at S-ischiensis_contig8:1427801..1433396+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19437.1 ID=mRNA_S-ischiensis_contig8.19437.1|Name=mRNA_S-ischiensis_contig8.19437.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5596bp|location=Sequence derived from alignment at S-ischiensis_contig8:1427801..1433396+ (Schizocladia ischiensis KU_0333)
CCCGGGGATGGTGGGCTGGGGGGCCTGGAGGATTGGGCGGCCACGCTGGA TCTGTCACAGGTAAGGTACTGGTACTGTACTTCGCATAAGCACAAGTGGC TTCGATCCGTCTTCTCCGGTCATCCACTTCACATCGCCGGCGCTCTCTGG TGTCTGCGCCACCGGCCCCTGATGTTGTACTACGTACAATGCTGCAGGGA AGTAGCTTACCCACGCGTACTAGTAGTAGTAGTTTCAATGGCCGCACTCG CAGGAGGACGGTGGGAGGCGCTGCTTGCAATGTCATGCGGCGTGGCGTCG AACTACAGCAACGTGTACACCCGCCGCACCGCGAGCGCACTACAGCAACG CATCGCGTCGCGTCGCGTCACGCCACGCCGCACGCCACGGCAGCGTCCCG CCATCCTCATCACTCAAAGGATTAGTTATCCTCATCACTCAAAGGGTTCA TGATCCTCATCACTCGAAGAGTTATTGATCCTCCTCACTCAAAGGGTTCA TGATCCTCATCACTCTTGAAAAGGGTTAGTGATCCTCATCACTTGAAGGG TTGATGATCACCCGGTGCTCGCACCGGCTGCCGCGTGAATTGAACCAACC GCTGTCGTCAGGTGACGGAGGCCTGCTGCCGGGCGGCCCTGGAGGGCGAG CGGGCCAACGTGATACTGGTAAGACGCTGCGTGGAGGAGCTGGGCGGGGT GCCGTCCATGCTGCCCGTGTTCGACACCACCAACCGCCCGGAGGAGAAGG TTGGTCTATTGTACCGCCTGGATGCTGTCATTCATATCAATAGTAACGAG GTACTCGTACTCCTACAATCGCACGTGTGTGAGATTGACTGTTCCTCGCC AGCGATAAACAAACACCCAGAAGAAACTGGGCGGCCCGGGCGCCCGGGCC GCCCATCGGCATCGCAAAGTTGAGCGCCGCCTGACTGATGTCCAAGCCCA GGTGGTGAAGTACCCACAAATGGCCCCGCAGGGCGAAAACTTTGGCGTCG TCCGCCCAAATGGGGGCTCCCGGGCACTATTTTGTGGGCGGAGGAGCCAC AAAATTAGGCGCGGGTGCCGCCTACGGCGCCACAAAAGTTAGGCGGCTTT GGGCCCAAACCCAATTTTTTAGGCGGGCCGCCCAAAAATGCCCCAGCTTT TCTATCACTGTTTCTCGCCTGGATGCTATTGTAGAGTAGGCGGCCCTTGT GGCACCACGACACGGCGCTAGAAACCGTACGAGTACTTGGGTGCACCAGG CAGGGGGGTTGTTTTTGCTGAGCCGGGAGCGTTTGCAGCGAGGGAGAGGC ATGTGCGGTGTTGTTTGTTGGAAGACTGCAAGCAAATACGGTGGCCTTTG TGCACCGCCGCGGCGAACGCTGGTTGCGGTTTTGTTTCGCCGTGAAGTCC ACTGGAGCGGGTGAAGGCTTGCGGGATGGATCTCGGCGAAGGACGGTCGT GGGGTATTGTGGAGCGCGCGTACAGTACAGTACAGTACGTTGCAGTAAAG TACAGCTCTGCTGATGCAGGTATGGTACTTCCAAGCGGGCGGTTGCATAG CCAGAATGGTCATCGAGTGCTGTGGAGCGCGCGTACAGTACGTTACAGTA CAGTACAGCTCTGCTGATGCAGGTATGGTACTTTCAAGCGGGCAGTTGCA TAGCCAGAACACTGTGAGTATCCCTAAACCTGGAACATGTTCAGAGTTCC ACCACTTGGATATACCAAGCTCACGCACCCAATTTCAGGCAACCCTAGCC ATTGTCTCTCTCTCTCTCTCTGTCTCTCTTTCGCCCCCTCCCCACCTCTC TCCCTCCCTCCCTCCCTCTGTCTTCCTACCTGACTCCTGCTCCCCCCCAC ACACACACATAATGCGCGGCCGCCCGCCCGCCCCACCCACCCGCAAACCC ACAAACACACGCCCAGACTGTCATCACCGCCGTGGCGCACCTGTGCTTCC GTCTCCTGGACTCCAGCGCCGAGATACGCTCCTCTATCCGCCTGCAGCAT GCCTTCCGAGCGCATCTCATGGCAACGGGCAGGGCCGACATTGTGCGTCG CCCGAGAGCACAGGACCAGGACCAGGGCCAGGGCCGGTTGGTGGCCCGGG GGGGGGGAGCAGAGACGTCCAAGCGGCTCGGGGGGGTGGCAGTGGGGCAC GAGGTACTCGTCAGCGAGCGCCAGGTGCGTGACAACTGAAGCATATTGTA CGGTGTGGCGCAGTGTGTTTGGAGCGTGTTGGGTTTCTTGTGCACGTGCG TGCGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTTTGCT CTTGCACGTGGGGGGCGCGCGCTAACCGCGTGTGTGGACCACGTGCTATT TTCCTACAGTCCATACGCCTCCCCATGATGAATTTGACTTGTCCCCCCCG CCCTCCGCGCTCCGCCCGTCACACTCCCCCCGCCGCTGTTCGGCCGCCTC TACCGCTGCCGCCGCCACCGCCGCCGCCGCCTCCATCAGCTTGCTGTGGC CCGCGCAACGGTGGTGGTGCAGCGCTGGTGGCGCGACACCCAGGACCAGC GCAGAGCCCTTGACCGCGCCCAACAGGAGGCGGAAGAAGAGGAGCGCAGG CCGGGGGCGGCGGCGGCGGCAGCCGCCGCAGCGGAAGAGGCCGGGTATGC GAAGGCGGAGGCGGGGGCGGCGGTGGAGGAGGAGGAGGCAGCGACGGTGG TCCTGCAGACATGGATGCGGGCCCGGCTACAGCGCTGCTGGTACCGGGCG CTCTGCGGGCAGGTGGCGGCGGCGACAGCGTTGCAGGTGTGGGCATGGGG CGGGGGTTAGGGTTGGGCGGGGCCGGGGGAGGGCGTGGGAAGGGCCGGGG GGGCGTGCTTGGGGAAGAAATTGTCTGGGGGTTTGCTTTTTGGTTTTCGC GCGGGGGACTTGTCGATGGACTGCACAGATAGGTAGGTCCGCGGTAAAGT GAGGGTGGGAGGTCATGTCCCCCACCGTACGGTAGGTACTCGAGTACCTA AGTACGGATACTTTGAGTAACGTTTTATGGCTCTGCAAGACGCCATCCTT CCCGTTCACAATTTGTAGCGTACGGTGATGTCAATGGTCTCGGGACTACG GCAAGCACAACGTGCGTACATACTATACTTCGTATACAGTAGTTAGCCAT GTCCATTTGTCAAGAATACGGGCGCCGCTTTTTCTGCACGATGCCGCTAA CACGCCAACAAAACTGCCTCTCCCGCCCGGCCCACGGTGCGCCACCCCCG CCAGGCGCGGGCCCGGGGCTTCCTCGCCCGCCGGCACCTGGCCACAGCCG CTGCGGCCGCGGCACAAATCCAGCACCTGGTGCGCTGCCGGGCCGCCCGC CGACGCCTGCGCCTCCTCGCCCAGCAAGCACGGCGGCAGCGGGAGGCCGC AGAGGCGCAAGAGGCCGAGCGGTCCAGACAGGCGGCGGCGGCGGCAGAGG AGGAGGCGTGCGCGGCGCGCATGCTGCAGGCGTTCTTCTCCGGGGTGGCG GCCAGGGCCCAGAGGTGGCGGGCCCTCCGGGAAGCGGCGGCGGCGGCGGT GGTGGTCCAGGCGTGGTGGAGGGGCTCCTCGCACAGGGTCAAGCTCCGCG AAACCGCTCGGGCAACAGTGGCCGTGCAGGCCTGGTGGAGGGGCGCCTCG CGGCAGGCCGGGCTCTGCGAAACCGCTCGGGCTGCGGTGGCGGCGCAGGC GTGGTGGAGGGGTGCCCGCGCGGCGGCGGAGTACCGGAGGGCGCGGGCGT CGGCCGTGGCGCTGCAGGGGGCGTGGCGGGAGTACAAGCGGGCACGGGAG GCGTTTGCCCTGCGGGAGCTGCGGCGGGCAGAGGCGGTAGAGACGGCGGC GGCGGCGGTGGCACTCCAGTCGTGGTGGAGGGGGGTGTCGGCTAGGCGGG GCCTGTGGGCAAGGGCCCGGGCCGCGGTTGCGGTGCAGGGGTGGTGGAGG GCTGTTTTGGCAGAGGCGCGCGCGCGGGAAGCCGCGGCGGCGGCGGTGCG AGCGGCGGCGAGGGTTCAAGGGCGATGGCGGGCGGCGCACGCCAGGGCCA GGTGAGCAGGCGTGCATGGCCCCAGGTGGAGCTGGTGTAACTTGTACAGT GGTGAAGGGGTGATGGGGGTGCGCTGCTGCTGTTGCACAGTACTCGAGTA CGGGTTCTGGCACGTGTAGAGCCCTGTACGTGTTCTCGAGAACCTACTCG AGTACAGTTGCACTTATTGTATGTTGTATCATGTGGGTGTACAGTACACG TGGCCTCTGTTTGCGGTTCTCCTCGTCTGCGCCGCAGCCCGTCCTCGGCC CACCCTCGCACTCCCACCCTCCGGGAAGCATGGCCCGCAAGCTGGCCAGC TGCCTCGGGATCGTGGCAAGGCAGCGTCAACACACACACACACACACACA CATGCGCACCGTTTTGTGTTTGCTCCCGTCGCCCAAAACCAGGTTCCTCA CCGCCAAGCAGGGAGCTGTGCAGCTTCAGGCCCTTGGCCGTGGCCGGGCC GCCAGGGCCACCCTGCTGCTAACCACCCGGGCTGCAGTTGCGCTACAGGC GTGGTGGAGGGGTTCCCTGCGCCGGGCGGAGCTGCGCGACAATTGTCGGG CCGCGGTGGCGGTGCAGGCCTGGTGGAGGGGCGCCTTGAGCAGGGCAGAG CGTCGTGAAACTGCTCGGGCCACAGTAGCGCTACAGGCCTGGTGGAGGGG CACCTGGCACAGGGCCGAGCGCCTTGAAACCATTCGGGCTGCGGTGGTCG TGCAGGCCTGGTGGAGGGGCGCCACGGCATGGGCTGCTCTGCGTGAAACC GCCCGGGCCGCAGTGGCTGTGCAGGCCTGGTGGCGGGGAACGTGGGCCAA ACTCCACGAAAACGCTCGGGCTGCAGGGGCTGTGCAGGCCTGGTGGAGGG GCTGCTCGCACAGGACCAAGCTCCGCGAAACCGCACGGGCCACAGTGGCC GTGCAGGCCTGGTGGAGGGGCTGCTCGCACAGGGCCAAGCTCCGCGAAAC CGCTTGGGCAACAGTGGCTGTACAGGCGTGGTGGAGGGGCGCCTTGCACC GGGCCAAGCTCTGTGAAACCGCTCGGGCTGCAGTGGCTGTGCAGGCCTGG TGGAGGGGCGCCTCGCACAGGGCCAAGCTCCGCGAAACCATTCGGGTCAC AGTGGCCGTGCAGGCCTGGTGGAGGGGCTCCTCACACAGGACCCAGCTCA GCAAAACCGCTCGGGCCGCAGTGGCTGTGCAGGCCTGGTGGAGGGGCTCC TTGCACAGGGTCAGGCTCCGCGAAACCGCTAGGGCCACAGTGGCTGTGCA GGCCTGGTGGAGGGGCGTCTTGCACAGGGCCAAACTCCATAAAACTGCTC GGGCTGCAGCTGCGGTGCAGGCGTGGTGGAGGGGGACCTCGTGCAGGACC AAGCTCCGTGAAACAGCTCGGGCCGCTGTGGCCTTGCAGGCATGGTGGAG GGGTGTCTCGTGCAGGGCCGCGCTCCGCGAAACCGCCCGGGCCGCGGTGG GCGTGCAGGCCCGTTGGAGGGGCGTCGCGGCGCGGGCCGCCGCGCGCGAA ACTGCCCGGGCCGCGGTGGCGGTGCAGGCCTGGTGGAGGGGCGCGT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:1427801..1433396+

>mRNA_S-ischiensis_contig8.19437.1 ID=mRNA_S-ischiensis_contig8.19437.1|Name=mRNA_S-ischiensis_contig8.19437.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=5406bp|location=Sequence derived from alignment at S-ischiensis_contig8:1427801..1433396+ (Schizocladia ischiensis KU_0333)
CCCGGGGATGGTGGGCTGGGGGGCCTGGAGGATTGGGCGGCCACGCTGGA
TCTGTCACAGCCCGGGGATGGTGGGCTGGGGGGCCTGGAGGATTGGGCGG
CCACGCTGGATCTGTCACAGGTGACGGAGGCCTGCTGCCGGGCGGCCCTG
GAGGGCGAGCGGGCCAACGTGATACTGGTAAGACGCTGCGTGGAGGAGCT
GGGCGGGGTGCCGTCCATGCTGCCCGTGTTCGACACCACCAACCGCCCGG
AGGAGAAGGTGACGGAGGCCTGCTGCCGGGCGGCCCTGGAGGGCGAGCGG
GCCAACGTGATACTGGTAAGACGCTGCGTGGAGGAGCTGGGCGGGGTGCC
GTCCATGCTGCCCGTGTTCGACACCACCAACCGCCCGGAGGAGAAGACTG
TCATCACCGCCGTGGCGCACCTGTGCTTCCGTCTCCTGGACTCCAGCGCC
GAGATACGCTCCTCTATCCGCCTGCAGCATGCCTTCCGAGCGCATCTCAT
GGCAACGGGCAGGGCCGACATTGTGCGTCGCCCGAGAGCACAGGACCAGG
ACCAGGGCCAGGGCCGGTTGGTGGCCCGGGGGGGGGGAGCAGAGACGTCC
AAGCGGCTCGGGGGGGTGGCAGTGGGGCACGAGGTACTCGTCAGCGAGCG
CCAGACTGTCATCACCGCCGTGGCGCACCTGTGCTTCCGTCTCCTGGACT
CCAGCGCCGAGATACGCTCCTCTATCCGCCTGCAGCATGCCTTCCGAGCG
CATCTCATGGCAACGGGCAGGGCCGACATTGTGCGTCGCCCGAGAGCACA
GGACCAGGACCAGGGCCAGGGCCGGTTGGTGGCCCGGGGGGGGGGAGCAG
AGACGTCCAAGCGGCTCGGGGGGGTGGCAGTGGGGCACGAGGTACTCGTC
AGCGAGCGCCAGCTTGCTGTGGCCCGCGCAACGGTGGTGGTGCAGCGCTG
GTGGCGCGACACCCAGGACCAGCGCAGAGCCCTTGACCGCGCCCAACAGG
AGGCGGAAGAAGAGGAGCGCAGGCCGGGGGCGGCGGCGGCGGCAGCCGCC
GCAGCGGAAGAGGCCGGGTATGCGAAGGCGGAGGCGGGGGCGGCGGTGGA
GGAGGAGGAGGCAGCGACGGTGGTCCTGCAGACATGGATGCGGGCCCGGC
TACAGCGCTGCTGGTACCGGGCGCTCTGCGGGCAGGTGGCGGCGGCGACA
GCGTTGCAGCTTGCTGTGGCCCGCGCAACGGTGGTGGTGCAGCGCTGGTG
GCGCGACACCCAGGACCAGCGCAGAGCCCTTGACCGCGCCCAACAGGAGG
CGGAAGAAGAGGAGCGCAGGCCGGGGGCGGCGGCGGCGGCAGCCGCCGCA
GCGGAAGAGGCCGGGTATGCGAAGGCGGAGGCGGGGGCGGCGGTGGAGGA
GGAGGAGGCAGCGACGGTGGTCCTGCAGACATGGATGCGGGCCCGGCTAC
AGCGCTGCTGGTACCGGGCGCTCTGCGGGCAGGTGGCGGCGGCGACAGCG
TTGCAGGCGCGGGCCCGGGGCTTCCTCGCCCGCCGGCACCTGGCCACAGC
CGCTGCGGCCGCGGCACAAATCCAGCACCTGGTGCGCTGCCGGGCCGCCC
GCCGACGCCTGCGCCTCCTCGCCCAGCAAGCACGGCGGCAGCGGGAGGCC
GCAGAGGCGCAAGAGGCCGAGCGGTCCAGACAGGCGGCGGCGGCGGCAGA
GGAGGAGGCGTGCGCGGCGCGCATGCTGCAGGCGTTCTTCTCCGGGGTGG
CGGCCAGGGCCCAGAGGTGGCGGGCCCTCCGGGAAGCGGCGGCGGCGGCG
GTGGTGGTCCAGGCGTGGTGGAGGGGCTCCTCGCACAGGGTCAAGCTCCG
CGAAACCGCTCGGGCAACAGTGGCCGTGCAGGCCTGGTGGAGGGGCGCCT
CGCGGCAGGCCGGGCTCTGCGAAACCGCTCGGGCTGCGGTGGCGGCGCAG
GCGTGGTGGAGGGGTGCCCGCGCGGCGGCGGAGTACCGGAGGGCGCGGGC
GTCGGCCGTGGCGCTGCAGGGGGCGTGGCGGGAGTACAAGCGGGCACGGG
AGGCGTTTGCCCTGCGGGAGCTGCGGCGGGCAGAGGCGGTAGAGACGGCG
GCGGCGGCGGTGGCACTCCAGTCGTGGTGGAGGGGGGTGTCGGCTAGGCG
GGGCCTGTGGGCAAGGGCCCGGGCCGCGGTTGCGGTGCAGGGGTGGTGGA
GGGCTGTTTTGGCAGAGGCGCGCGCGCGGGAAGCCGCGGCGGCGGCGGTG
CGAGCGGCGGCGAGGGTTCAAGGGCGATGGCGGGCGGCGCACGCCAGGGC
CAGGCGCGGGCCCGGGGCTTCCTCGCCCGCCGGCACCTGGCCACAGCCGC
TGCGGCCGCGGCACAAATCCAGCACCTGGTGCGCTGCCGGGCCGCCCGCC
GACGCCTGCGCCTCCTCGCCCAGCAAGCACGGCGGCAGCGGGAGGCCGCA
GAGGCGCAAGAGGCCGAGCGGTCCAGACAGGCGGCGGCGGCGGCAGAGGA
GGAGGCGTGCGCGGCGCGCATGCTGCAGGCGTTCTTCTCCGGGGTGGCGG
CCAGGGCCCAGAGGTGGCGGGCCCTCCGGGAAGCGGCGGCGGCGGCGGTG
GTGGTCCAGGCGTGGTGGAGGGGCTCCTCGCACAGGGTCAAGCTCCGCGA
AACCGCTCGGGCAACAGTGGCCGTGCAGGCCTGGTGGAGGGGCGCCTCGC
GGCAGGCCGGGCTCTGCGAAACCGCTCGGGCTGCGGTGGCGGCGCAGGCG
TGGTGGAGGGGTGCCCGCGCGGCGGCGGAGTACCGGAGGGCGCGGGCGTC
GGCCGTGGCGCTGCAGGGGGCGTGGCGGGAGTACAAGCGGGCACGGGAGG
CGTTTGCCCTGCGGGAGCTGCGGCGGGCAGAGGCGGTAGAGACGGCGGCG
GCGGCGGTGGCACTCCAGTCGTGGTGGAGGGGGGTGTCGGCTAGGCGGGG
CCTGTGGGCAAGGGCCCGGGCCGCGGTTGCGGTGCAGGGGTGGTGGAGGG
CTGTTTTGGCAGAGGCGCGCGCGCGGGAAGCCGCGGCGGCGGCGGTGCGA
GCGGCGGCGAGGGTTCAAGGGCGATGGCGGGCGGCGCACGCCAGGGCCAG
GTTCCTCACCGCCAAGCAGGGAGCTGTGCAGCTTCAGGCCCTTGGCCGTG
GCCGGGCCGCCAGGGCCACCCTGCTGCTAACCACCCGGGCTGCAGTTGCG
CTACAGGCGTGGTGGAGGGGTTCCCTGCGCCGGGCGGAGCTGCGCGACAA
TTGTCGGGCCGCGGTGGCGGTGCAGGCCTGGTGGAGGGGCGCCTTGAGCA
GGGCAGAGCGTCGTGAAACTGCTCGGGCCACAGTAGCGCTACAGGCCTGG
TGGAGGGGCACCTGGCACAGGGCCGAGCGCCTTGAAACCATTCGGGCTGC
GGTGGTCGTGCAGGCCTGGTGGAGGGGCGCCACGGCATGGGCTGCTCTGC
GTGAAACCGCCCGGGCCGCAGTGGCTGTGCAGGCCTGGTGGCGGGGAACG
TGGGCCAAACTCCACGAAAACGCTCGGGCTGCAGGGGCTGTGCAGGCCTG
GTGGAGGGGCTGCTCGCACAGGACCAAGCTCCGCGAAACCGCACGGGCCA
CAGTGGCCGTGCAGGCCTGGTGGAGGGGCTGCTCGCACAGGGCCAAGCTC
CGCGAAACCGCTTGGGCAACAGTGGCTGTACAGGCGTGGTGGAGGGGCGC
CTTGCACCGGGCCAAGCTCTGTGAAACCGCTCGGGCTGCAGTGGCTGTGC
AGGCCTGGTGGAGGGGCGCCTCGCACAGGGCCAAGCTCCGCGAAACCATT
CGGGTCACAGTGGCCGTGCAGGCCTGGTGGAGGGGCTCCTCACACAGGAC
CCAGCTCAGCAAAACCGCTCGGGCCGCAGTGGCTGTGCAGGCCTGGTGGA
GGGGCTCCTTGCACAGGGTCAGGCTCCGCGAAACCGCTAGGGCCACAGTG
GCTGTGCAGGCCTGGTGGAGGGGCGTCTTGCACAGGGCCAAACTCCATAA
AACTGCTCGGGCTGCAGCTGCGGTGCAGGCGTGGTGGAGGGGGACCTCGT
GCAGGACCAAGCTCCGTGAAACAGCTCGGGCCGCTGTGGCCTTGCAGGCA
TGGTGGAGGGGTGTCTCGTGCAGGGCCGCGCTCCGCGAAACCGCCCGGGC
CGCGGTGGGCGTGCAGGCCCGTTGGAGGGGCGTCGCGGCGCGGGCCGCCG
CGCGCGAAACTGCCCGGGCCGCGGTGGCGGTGCAGGCCTGGTGGAGGGGC
GCGGTTCCTCACCGCCAAGCAGGGAGCTGTGCAGCTTCAGGCCCTTGGCC
GTGGCCGGGCCGCCAGGGCCACCCTGCTGCTAACCACCCGGGCTGCAGTT
GCGCTACAGGCGTGGTGGAGGGGTTCCCTGCGCCGGGCGGAGCTGCGCGA
CAATTGTCGGGCCGCGGTGGCGGTGCAGGCCTGGTGGAGGGGCGCCTTGA
GCAGGGCAGAGCGTCGTGAAACTGCTCGGGCCACAGTAGCGCTACAGGCC
TGGTGGAGGGGCACCTGGCACAGGGCCGAGCGCCTTGAAACCATTCGGGC
TGCGGTGGTCGTGCAGGCCTGGTGGAGGGGCGCCACGGCATGGGCTGCTC
TGCGTGAAACCGCCCGGGCCGCAGTGGCTGTGCAGGCCTGGTGGCGGGGA
ACGTGGGCCAAACTCCACGAAAACGCTCGGGCTGCAGGGGCTGTGCAGGC
CTGGTGGAGGGGCTGCTCGCACAGGACCAAGCTCCGCGAAACCGCACGGG
CCACAGTGGCCGTGCAGGCCTGGTGGAGGGGCTGCTCGCACAGGGCCAAG
CTCCGCGAAACCGCTTGGGCAACAGTGGCTGTACAGGCGTGGTGGAGGGG
CGCCTTGCACCGGGCCAAGCTCTGTGAAACCGCTCGGGCTGCAGTGGCTG
TGCAGGCCTGGTGGAGGGGCGCCTCGCACAGGGCCAAGCTCCGCGAAACC
ATTCGGGTCACAGTGGCCGTGCAGGCCTGGTGGAGGGGCTCCTCACACAG
GACCCAGCTCAGCAAAACCGCTCGGGCCGCAGTGGCTGTGCAGGCCTGGT
GGAGGGGCTCCTTGCACAGGGTCAGGCTCCGCGAAACCGCTAGGGCCACA
GTGGCTGTGCAGGCCTGGTGGAGGGGCGTCTTGCACAGGGCCAAACTCCA
TAAAACTGCTCGGGCTGCAGCTGCGGTGCAGGCGTGGTGGAGGGGGACCT
CGTGCAGGACCAAGCTCCGTGAAACAGCTCGGGCCGCTGTGGCCTTGCAG
GCATGGTGGAGGGGTGTCTCGTGCAGGGCCGCGCTCCGCGAAACCGCCCG
GGCCGCGGTGGGCGTGCAGGCCCGTTGGAGGGGCGTCGCGGCGCGGGCCG
CCGCGCGCGAAACTGCCCGGGCCGCGGTGGCGGTGCAGGCCTGGTGGAGG
GGCGCG
back to top