mRNA_S-ischiensis_contig8.19435.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-ischiensis_contig8.19435.1
Unique Name	mRNA_S-ischiensis_contig8.19435.1
Type	mRNA
Organism	Schizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)

Homology

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BLAST of mRNA_S-ischiensis_contig8.19435.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.380e-16
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1

Query:   13 GKRLDKGLRTFLMERVIKCPSIKSKYGFRSLVASGRSERMYTEELSRHTLRKVLDLVILLDRAK 204
            G R+D+ LRTF+ ER++KCP +K++YGFR  VASG SE  Y +EL RH L   LDLV+ LDRAK
Sbjct:  310 GGRVDRALRTFVAERLVKCPEMKARYGFRGRVASGASEVEYNDELGRHALTHFLDLVLFLDRAK 373

[Close]

BLAST of mRNA_S-ischiensis_contig8.19435.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 4.380e-16
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1

Query:   13 GKRLDKGLRTFLMERVIKCPSIKSKYGFRSLVASGRSERMYTEELSRHTLRKVLDLVILLDRAK 204
            G R+D+ LRTF+ ER++KCP +K++YGFR  VASG SE  Y +EL RH L   LDLV+ LDRAK
Sbjct:  423 GGRVDRALRTFVAERLVKCPEMKARYGFRGRVASGASEVEYNDELGRHALTHFLDLVLFLDRAK 486

The following BLAST results are available for this feature:

BLAST of mRNA_S-ischiensis_contig8.19435.1 vs. uniprot

BLAST of mRNA_S-ischiensis_contig8.19435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KRH5_9PHAE	4.380e-16	59.38	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LLN9_ECTSI	4.380e-16	59.38	Similar to asp (Abnormal spindle)-like, microcepha...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-ischiensis_contig8	contig	S-ischiensis_contig8:1422878..1424270 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Schizocladia ischiensis KU_0333	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	81.6
Seed ortholog evalue	1.7e-13
Seed eggNOG ortholog	2880.D8LLN9
Preferred name	ASPM
KEGG ko	ko:K16743,ko:K16774
GOs	GO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000922,GO:0001764,GO:0002052,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007405,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008283,GO:0008284,GO:0008406,GO:0008584,GO:0009786,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0016477,GO:0017145,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021537,GO:0021543,GO:0021872,GO:0021873,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030496,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0036445,GO:0036449,GO:0040007,GO:0040011,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045137,GO:0045177,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045769,GO:0046546,GO:0046661,GO:0048103,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051179,GO:0051225,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051653,GO:0051657,GO:0051661,GO:0051674,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0051961,GO:0051962,GO:0055057,GO:0060284,GO:0060322,GO:0060828,GO:0061351,GO:0061458,GO:0061842,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072686,GO:0072687,GO:0090263,GO:0090306,GO:0097150,GO:0097431,GO:0098590,GO:0098727,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140013,GO:1902692,GO:1903046,GO:1990752,GO:2000026,GO:2000177,GO:2000179,GO:2000241,GO:2000648
EggNOG free text desc.	translation initiation factor activity
EggNOG OGs	COG5022@1,KOG0160@2759,KOG0165@1,KOG0165@2759
COG Functional cat.	Z
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03036
Hectar predicted targeting category	other localisation
Exons	3
Model size	230
Cds size	228
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-ischiensis_contig8.19435.1	prot_S-ischiensis_contig8.19435.1	Schizocladia ischiensis KU_0333	polypeptide	S-ischiensis_contig8 1422878..1424270 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817281.3639913-CDS-S-ischiensis_contig8:1422877..1422931	1622817281.3639913-CDS-S-ischiensis_contig8:1422877..1422931	Schizocladia ischiensis KU_0333	CDS	S-ischiensis_contig8 1422878..1422931 +
1695740992.8058155-CDS-S-ischiensis_contig8:1422877..1422931	1695740992.8058155-CDS-S-ischiensis_contig8:1422877..1422931	Schizocladia ischiensis KU_0333	CDS	S-ischiensis_contig8 1422878..1422931 +
1622817281.376831-CDS-S-ischiensis_contig8:1423466..1423531	1622817281.376831-CDS-S-ischiensis_contig8:1423466..1423531	Schizocladia ischiensis KU_0333	CDS	S-ischiensis_contig8 1423467..1423531 +
1695740992.8200235-CDS-S-ischiensis_contig8:1423466..1423531	1695740992.8200235-CDS-S-ischiensis_contig8:1423466..1423531	Schizocladia ischiensis KU_0333	CDS	S-ischiensis_contig8 1423467..1423531 +
1622817281.388673-CDS-S-ischiensis_contig8:1424161..1424270	1622817281.388673-CDS-S-ischiensis_contig8:1424161..1424270	Schizocladia ischiensis KU_0333	CDS	S-ischiensis_contig8 1424162..1424270 +
1695740992.8305047-CDS-S-ischiensis_contig8:1424161..1424270	1695740992.8305047-CDS-S-ischiensis_contig8:1424161..1424270	Schizocladia ischiensis KU_0333	CDS	S-ischiensis_contig8 1424162..1424270 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-ischiensis_contig8:1422878..1424270+
coding sequence from alignment at S-ischiensis_contig8:1422878..1424270+

protein sequence of mRNA_S-ischiensis_contig8.19435.1

>prot_S-ischiensis_contig8.19435.1 ID=prot_S-ischiensis_contig8.19435.1|Name=mRNA_S-ischiensis_contig8.19435.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=76bp
LPVEGKRLDKGLRTFLMERVIKCPSIKSKYGFRSLVASGRSERMYTEELS
RHTLRKVLDLVILLDRAKVRCCTLM*

mRNA from alignment at S-ischiensis_contig8:1422878..1424270+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-ischiensis_contig8.19435.1 ID=mRNA_S-ischiensis_contig8.19435.1|Name=mRNA_S-ischiensis_contig8.19435.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1393bp|location=Sequence derived from alignment at S-ischiensis_contig8:1422878..1424270+ (Schizocladia ischiensis KU_0333)
TTGCCTGTGGAGGGCAAGCGCCTGGATAAGGGGCTCAGGACTTTCCTCAT
GGAGGTGGGTCTGTTCTGTCTGTTATTTCAACTTATTTGCCGGGGCTGTT
TACCCCCCGTGCGAGAGAGATGTGTGGTCAATGGTCAAATAGCTACGACA
GGAAAGTCATGAGTACACCCTCGGGCTGTTTCTGGTTACGGAAGTAAGCA
GTACAATGGTGAGGTTGTCATGGATGTTGTCGTTTTTTTTTTTTTTTTTT
TTGGGGGGGGGGGGGAAAGAGACGTGAAAAGCAACGAGTAGGAAAAGAGA
GGTAGTCCCAGTTATGCGAGTACTCCACATTGTGTGCTTGGAAGTATTGC
GTACTTTTCTGCCTTTGCCTTATCTGCGAGTGAAGGAGGCCGCGACGGGT
ACACATTGCAGTCCTTTGGGGCTGGGAGGTGGGCAACAACTATTGCAGTT
TGGCAGCCCTACCTAATTTGGATAGCCGACAGACTGAAGGGCCGACCAAC
TGACTGAAGCGTTTCGACCGCGCCTGCCCTTGGACCGTTCTTTTTCGTTC
TTTGTTTGCCCCCACTGCCGCTTTGGGTGGTGTACACAGCGGGTGATCAA
GTGCCCGTCCATCAAGAGCAAGTACGGGTTTCGCAGCCTCGTGGCCAGCG
GCAGGTGCGTGTGCGTGTGTGTGCGTGCGCGCGTGTGTGTGCGTGCGTGC
GTGCGCACGCGCGTGTGTTTGTGTGTTTGTATGTTTGCCCCCCTCGTGGG
CTGTTCTCCTGCTGCATTGTACAGCTTGTTGGATTTATGTCCACGGGAGG
TGCGTCCTTGTGTACTGTGTATGTGTGTGTGTGTTTTACCGCCCTTGTGG
GGTGTAGCCCGGTATTGTACAGCCCTGTTGCGTTGAACATGCATTTGTAG
GTGACCGGACCCGGTGCTCGAGCGAGCGGAGTGAGGCTCACCTAGTGCAA
TTAATAGAGTATTCAATCAAGTGCCTTGCCTCTGTCTCGGCTGCAGAGGC
GCGCGGTCAATGGTCTCGGGGCTTGCCGTTGGCTACGGCAAGCACAATGT
GGGTAAACATATGTAGTATATATATATACCTTGACGTACTTCAAGCAGCA
AAAGGTCCAATCGCGGAGGACTCTTTCACTATTTGTGCTCCTATTTCACG
CTAGACTTGCATATTTTAGTGTCCCGTCGTTCTCAAATGGTAAAACAGGG
GACCGCTGTAACTCCTGATACGGAGGAAGTGAGGCAATACTACTTATCGC
CTGGATGCCCCCCCCTCCGCTTCTGGGCGCAAAGGTCGGAGCGGATGTAC
ACGGAGGAGCTGTCGCGGCACACCCTGCGCAAGGTGCTGGACCTGGTGAT
ACTCCTCGATAGGGCCAAGGTGCGCTGCTGCACACTCATGTGA

Coding sequence (CDS) from alignment at S-ischiensis_contig8:1422878..1424270+

>mRNA_S-ischiensis_contig8.19435.1 ID=mRNA_S-ischiensis_contig8.19435.1|Name=mRNA_S-ischiensis_contig8.19435.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=456bp|location=Sequence derived from alignment at S-ischiensis_contig8:1422878..1424270+ (Schizocladia ischiensis KU_0333)
TTGCCTGTGGAGGGCAAGCGCCTGGATAAGGGGCTCAGGACTTTCCTCAT
GGAGTTGCCTGTGGAGGGCAAGCGCCTGGATAAGGGGCTCAGGACTTTCC
TCATGGAGCGGGTGATCAAGTGCCCGTCCATCAAGAGCAAGTACGGGTTT
CGCAGCCTCGTGGCCAGCGGCAGCGGGTGATCAAGTGCCCGTCCATCAAG
AGCAAGTACGGGTTTCGCAGCCTCGTGGCCAGCGGCAGGTCGGAGCGGAT
GTACACGGAGGAGCTGTCGCGGCACACCCTGCGCAAGGTGCTGGACCTGG
TGATACTCCTCGATAGGGCCAAGGTGCGCTGCTGCACACTCATGTGAGTC
GGAGCGGATGTACACGGAGGAGCTGTCGCGGCACACCCTGCGCAAGGTGC
TGGACCTGGTGATACTCCTCGATAGGGCCAAGGTGCGCTGCTGCACACTC
ATGTGA