mRNA_S-ischiensis_contig8.19431.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19431.1
Unique NamemRNA_S-ischiensis_contig8.19431.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19431.1 vs. uniprot
Match: A0A6H5KKU1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKU1_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 4.250e-5
Identity = 24/42 (57.14%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:  592 RTRQMGLQFAMDTVRYAPDSEVLSFMLHLVQGLRYAANAATS 717
            RT++MG++FA+DT++Y+ D EV  FMLHLVQGLR+ A ++T+
Sbjct:  716 RTQEMGVRFALDTLKYSEDEEVAVFMLHLVQGLRHEAQSSTN 757
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKU1_9PHAE4.250e-557.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1404632..1409089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog2880.D8LNH7
KEGG rclassRC00002,RC00078
KEGG koko:K00914,ko:K04679
KEGG ReactionR03362
KEGG Pathwayko00562,ko01100,ko04070,ko04136,ko04138,ko04140,ko04144,ko04145,ko04350,ko04371,ko05152,ko05167,map00562,map01100,map04070,map04136,map04138,map04140,map04144,map04145,map04350,map04371,map05152,map05167
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
EggNOG free text desc.1-phosphatidylinositol binding
EggNOG OGsCOG5032@1,KOG0906@2759,KOG1841@1,KOG1841@2759
EC2.7.1.137
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko04131
Hectar predicted targeting categoryother localisation
Exons6
Model size998
Cds size996
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19431.1prot_S-ischiensis_contig8.19431.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1404634..1409089 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817258.2451246-CDS-S-ischiensis_contig8:1404633..14049451622817258.2451246-CDS-S-ischiensis_contig8:1404633..1404945Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1404634..1404945 -
1695740975.3987072-CDS-S-ischiensis_contig8:1404633..14049451695740975.3987072-CDS-S-ischiensis_contig8:1404633..1404945Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1404634..1404945 -
1622817258.257013-CDS-S-ischiensis_contig8:1405510..14058431622817258.257013-CDS-S-ischiensis_contig8:1405510..1405843Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1405511..1405843 -
1695740975.4118383-CDS-S-ischiensis_contig8:1405510..14058431695740975.4118383-CDS-S-ischiensis_contig8:1405510..1405843Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1405511..1405843 -
1622817258.2718604-CDS-S-ischiensis_contig8:1406445..14065411622817258.2718604-CDS-S-ischiensis_contig8:1406445..1406541Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1406446..1406541 -
1695740975.4321816-CDS-S-ischiensis_contig8:1406445..14065411695740975.4321816-CDS-S-ischiensis_contig8:1406445..1406541Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1406446..1406541 -
1622817258.2827008-CDS-S-ischiensis_contig8:1407143..14072391622817258.2827008-CDS-S-ischiensis_contig8:1407143..1407239Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1407144..1407239 -
1695740975.4475603-CDS-S-ischiensis_contig8:1407143..14072391695740975.4475603-CDS-S-ischiensis_contig8:1407143..1407239Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1407144..1407239 -
1622817258.293227-CDS-S-ischiensis_contig8:1408181..14082771622817258.293227-CDS-S-ischiensis_contig8:1408181..1408277Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1408182..1408277 -
1695740975.4594083-CDS-S-ischiensis_contig8:1408181..14082771695740975.4594083-CDS-S-ischiensis_contig8:1408181..1408277Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1408182..1408277 -
1622817258.3053904-CDS-S-ischiensis_contig8:1409026..14090891622817258.3053904-CDS-S-ischiensis_contig8:1409026..1409089Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1409027..1409089 -
1695740975.4724603-CDS-S-ischiensis_contig8:1409026..14090891695740975.4724603-CDS-S-ischiensis_contig8:1409026..1409089Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1409027..1409089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19431.1

>prot_S-ischiensis_contig8.19431.1 ID=prot_S-ischiensis_contig8.19431.1|Name=mRNA_S-ischiensis_contig8.19431.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=332bp
GAGAKGNKQEQGGTSGSRVGEVAALKRELETVRQTLEGKLREADAERARL
LTKLATVKADSSRKLEGLESSLAATRAELLRRDEQLANSVKHAREETARA
DAAMLDLRLCQDAVRAQASLAMAASSSSADGHTLLAGSPALRTPPPPSWT
PEKKTLSNNDVSGPGAAGPGPGTEALSRSRSGSVNPAAATAAAALAARTR
QMGLQFAMDTVRYAPDSEVLSFMLHLVQGLRYAANAATSTSLHHPALSTG
SGHGGSSSGSTHGGSASGSTHGGSGHPVASPKRGLPRILFGPDRSPARAA
GAGAGAAPVPDTSAYPTEESAVSPPQRASSFP
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mRNA from alignment at S-ischiensis_contig8:1404632..1409089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19431.1 ID=mRNA_S-ischiensis_contig8.19431.1|Name=mRNA_S-ischiensis_contig8.19431.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4458bp|location=Sequence derived from alignment at S-ischiensis_contig8:1404632..1409089- (Schizocladia ischiensis KU_0333)
GGAGCGGGCGCCAAGGGCAACAAGCAGGAGCAGGGGGGCACGTCCGGGTC
CCGCGTGGGGGAGGTGGGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
CGTGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGGAGGGGTGTGTGATTT
TGAAACGTTTTAAATGAAACGAGCTACAATGGCACGCGTGTGAGATGGAG
TGTTCTCGTGATAGGCGTTGGAGTGGTTGTCACATTTAAGAAATCAGTTT
ACGTAACTTCGCTGGCTACAATACACATGTGGGGACCGGGGGATTGAGGG
TTGTTCGTGGGGGTGTGGGTGCGTGTATGCGTGCGTGGGTGAGTGCGTCC
TCCGTGTGTAGGAGCCGATTTGCTTGTCATCCTTTCTCTCCTTCACATTC
CCTCCCCCCTTTCGTCGCTCCCTCCCTGCCGCCCCATCTCCCGCTCTCTC
TCCCTCATCCGTCCTGCCCCCGGTCTCCACATCACCATCCCCAATCACGT
GCCTTCCGTCCGTCTCATTCGTCTCTACATGGCCTGCCCCGTGTCCATCT
CTCGCCTCACTCCCTTGTCCCTCTCCCCTCCATCCCTCTCCGTCCTGCCT
CCGCCAGGCCTCCCCCGCCTCTGTGTGTTGCCTCCCCCTCCCCCTTCCCC
CCCCACATTGCAACTACAGTACGTAGCGCTTTTCTCCCCCCATTTTGTTT
TTCATTCCTAGATGGGATACCCGCTACTGGTAGTACTCGTACGAGAAAGC
TCAATCTCACACGTGCAATTGTACCTCATTGCAATTTATATGAATCACCA
CCACCCCCAAAGGTTGCGGCGCTGAAACGGGAGCTGGAGACTGTCCGGCA
GACGCTGGAGGGGAAGCTGAGGGAAGCGGACGCAGAACGCGCGCGCCTGC
TTACCAAGGTGGGCTGCGCGCTTCGGCTGACGTGATGTCATGTGATGTCG
AACTAGCAAATGATTCATATACATTGTAACGAAGTACAATCGCACGTGTG
TGTGATTGACTGTTCTCGTATTAGTGGTTGTCGTCGAACTATGTAGGTAG
TGCTGCTTGATACTTTGTACTGTGCTTGGGGGGGGGTTCATGTGGGGCGA
GTGCGGCCGCTGTTTCGTGGGGCAGTGCGGTGCAATGCGATGCCATGTGC
TGCGACGTGGCGTGGCGTGGTGTGGTGTGATGTGAGGTCATGTGATGTGA
TGTGATGCAATGCGATGTGGCGTGGTGTGGTGTGGTGTTGATGTCACAGC
TGCCGCACAGTCAATATGTACAATACACTGCTCCGTCTCGCACGCGGCGC
GGGGTCAATGGTCTCGGGACTACGGCAAGCACCACGTGAGTACATATATA
TATATATATATGTATATATATATATGCAGTGCAGGGAGATTGCCTCCCCC
GTCCACGGCGTGTGGTAGGTCGTGGTCTCCGGACTAGGCCATACTACGAA
GTACATTACGTTCTTTTGGCGCACCGTCCCCCTCTGAGGGGTAGGTAGAG
TACAACATCCGACGCCACAGCATGACAGTAGAGCACTACCTTGGCGTAGG
TGCTGGCGATTGGTTAGAAGACACCATCCGGCCCTTGTCCTTGTCCCCTC
TGCTTAGGCACCTTCTTCCCCCTCGTCTGCCTCCTCGTCCTCCACCGCCC
CCCTGCCCCACCCCCCCCCCTTCCTCGTCCTCTTCCCGCTCCCCCCCCGT
TCCTCCTGCTCTTCGCCCCCTCCTCATCCTCTTCCGCTCCCCCGTTCCTC
CTGCTCTTCCCCCCTTCCTCGTCCTCTTCCCGCTCCCCCGTTCCTCCTGC
TCCCCCCCCCCCCCCCCCCATCTCCTGCTGCGTTGGCCGTGCGCGAGCAG
CTGGCCACCGTGAAGGCGGACAGCTCCCGCAAGCTGGAGGGCTTGGAGAG
CTCTCTTGCCGCCACCAGGGCAGAGCTCCTCCGCCGGGACGAGCAGGTGG
GAGAGAATCGGGGCCTTTCAGCTCCCTTTTGTGTGGAAAGAACCAAGCGA
GTGGAAAATACAGGCGATCCTACTTTGCGAGTTCCGGGCCCCAACACGCA
AGCCCGTCCTTCACCCGCCTTCAGCTCCCTTCTGATTGTGTTGCGCCCTG
AGCGGACAAGCTTTTGCGCGGCGGGGGGGCCGGGGGTTTACTGTAGCGCG
TTCGCGTCGCCCGCCCGGCTTGTTGTGCCCCTCTCTCTCCCGCCGCCGCC
CCCCCGCCCCGGCGGCGAAAGAGCACGGACAGTGCACGGAGACTGGCCGT
ACGAGTATGATTGTAGCCGCAGCTGTAGCCCCCCGGACGACAGAAAAGGT
GCGAGGAAATATATATGGCCATGGGAAGCAACGCACATGGATGCACCCCC
CCTGCCCCCCCTTGCATCCCCCTCTAAGGACACGTTGCTGCCCGCGCTCT
TGAAAGCCGAGCATGACTTCCCCTCCTCCTCCTCCTCCTCCCCCTCCAAC
CCGTTTTGTCCCGTTCTCGTGCGCTCTGCTGTGCCGTCTGTCCTTTGCAC
CCCCCCCCCCCCGTGCGCCGACCCACCCACCCACCCACCTGCCTGCAGCT
GGCCAACAGCGTCAAGCACGCCCGAGAGGAAACCGCGCGCGCGGACGCGG
CCATGCTGGACCTGCGTCTGTGCCAGGACGCCGTGCGCGCGCAGGTGGGG
GCGGGGTCGACGTGCCGATTGGAAGCAGGGTTGGCACTTAGAGGTTAATT
AGGGCCTAATTGGCCTTCATTTTAGGTCTAATTGCCCCTAATTACCTCTA
ACTAAGGGCCTGAAAGGGCGCCACTTAGGGGTTAAGTGCCAGCCCTGATG
GGAAGCGACGTGTCGTTGCCCACATCTGACGTATGTGTGCTTCAAGGTGT
GCGCTCGTTGGCTTGTTGTCTCGCGACATGCCTGCCTCGCTCGCGCGCTT
GGTCGACAGCCCGAAGAACTGGAGTTGTTAACTTTGAGAGTACTTGCCGT
GAGTGAGTAGGTAGGTAGCTGTTGTTGGTGTGGGACTGCAGGGACAGTTG
CAGGGACTGCTCGTGCTCCAGAGGTACGATTGTGTTGTAGCACCGGGTGC
GACGGGCAAGCGCACTGCGAGCACTCTACAAGTAAATACCCACTTCCCAG
TACATGGAATATCGCGCGCGTACCATCTGTGGACTGTGCTTCTGGAAGGA
AGGAAGGAAGGAAGTGAACTTCGTACTCGTGCTCCTACTGTACCAGAGCA
CGAGGACACGCCCATGCACCCACACGTCCTCCCCCTGACCCTACAGGCGA
GCTTGGCCATGGCCGCTTCCTCCTCCTCCGCAGACGGCCACACCCTCCTT
GCAGGCTCTCCTGCTCTCCGCACCCCCCCGCCCCCCAGCTGGACCCCGGA
GAAGAAAACGCTGTCGAACAACGATGTTTCGGGCCCCGGGGCCGCGGGGC
CTGGGCCTGGGACGGAGGCGTTGTCCCGTTCCCGGTCCGGCTCAGTCAAC
CCGGCTGCCGCCACGGCAGCGGCGGCACTGGCGGCCCGGACGAGGCAGAT
GGGGCTGCAGTTTGCCATGGACACGGTGCGGTATGCACCGGACAGCGAGG
TGCTGTCCTTCATGTTGCACCTCGTGCAGGTGGGTGCGGGGGAGGGGGGG
GGAGGAGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGG
GGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGCAGGGGAGGGGAGGGGAGG
GGAGGGGAGGGGAGGGGAGGGGAGCGGAGGGGAGCGGAGGGGAGGGGAGG
GAAAGGAAGGGAAGGAGGGGAGGGGAGGGGAAGGGAGGGGAGGGGAGGGC
AGGGGAGGGAAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGCGGAGGGG
AGCGGAGGGGAGGGGAGGGAAAGGAAGGGAAGGGAAGCAGGGCAAGCGCC
CAGCCAGGGGGCCGCCCGGTCAAGTGATACGAGTTTGGGCGGAGGGGAGG
AGGTGGCCGTAGTCAACGGCCCAACAGCTGCTACGGCACTGCAGTGCGAG
CGCAGCGCATGCATGCAGCTCGTACGTATCCATCCGACTGCCGTCCCTCC
CAACACACACGATGCTCATGCGACACCGCCCTCCCCCCGCCTGCCGTCCA
TCCTGTGCCTGCCTGCTTGCCCACGTGACGGCCGCGCATCGCAGGGCCTT
CGCTACGCCGCCAACGCGGCGACATCGACATCGCTGCACCACCCCGCCCT
CTCAACGGGCAGCGGCCACGGGGGCAGCTCTAGCGGCAGCACACACGGCG
GCAGCGCTAGCGGCAGCACCCATGGTGGCAGCGGCCACCCGGTAGCCTCC
CCCAAGCGGGGGCTCCCGCGCATCCTCTTTGGGCCGGACCGTTCGCCCGC
GAGGGCGGCAGGGGCAGGGGCGGGGGCGGCGCCGGTGCCGGACACGTCTG
CCTACCCGACCGAGGAGTCCGCCGTGTCACCGCCGCAGCGTGCCTCCTCC
TTCCCCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1404632..1409089-

>mRNA_S-ischiensis_contig8.19431.1 ID=mRNA_S-ischiensis_contig8.19431.1|Name=mRNA_S-ischiensis_contig8.19431.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1992bp|location=Sequence derived from alignment at S-ischiensis_contig8:1404632..1409089- (Schizocladia ischiensis KU_0333)
GGAGCGGGCGCCAAGGGCAACAAGCAGGAGCAGGGGGGCACGTCCGGGTC
CCGCGTGGGGGAGGGAGCGGGCGCCAAGGGCAACAAGCAGGAGCAGGGGG
GCACGTCCGGGTCCCGCGTGGGGGAGGTTGCGGCGCTGAAACGGGAGCTG
GAGACTGTCCGGCAGACGCTGGAGGGGAAGCTGAGGGAAGCGGACGCAGA
ACGCGCGCGCCTGCTTACCAAGGTTGCGGCGCTGAAACGGGAGCTGGAGA
CTGTCCGGCAGACGCTGGAGGGGAAGCTGAGGGAAGCGGACGCAGAACGC
GCGCGCCTGCTTACCAAGCTGGCCACCGTGAAGGCGGACAGCTCCCGCAA
GCTGGAGGGCTTGGAGAGCTCTCTTGCCGCCACCAGGGCAGAGCTCCTCC
GCCGGGACGAGCAGCTGGCCACCGTGAAGGCGGACAGCTCCCGCAAGCTG
GAGGGCTTGGAGAGCTCTCTTGCCGCCACCAGGGCAGAGCTCCTCCGCCG
GGACGAGCAGCTGGCCAACAGCGTCAAGCACGCCCGAGAGGAAACCGCGC
GCGCGGACGCGGCCATGCTGGACCTGCGTCTGTGCCAGGACGCCGTGCGC
GCGCAGCTGGCCAACAGCGTCAAGCACGCCCGAGAGGAAACCGCGCGCGC
GGACGCGGCCATGCTGGACCTGCGTCTGTGCCAGGACGCCGTGCGCGCGC
AGGCGAGCTTGGCCATGGCCGCTTCCTCCTCCTCCGCAGACGGCCACACC
CTCCTTGCAGGCTCTCCTGCTCTCCGCACCCCCCCGCCCCCCAGCTGGAC
CCCGGAGAAGAAAACGCTGTCGAACAACGATGTTTCGGGCCCCGGGGCCG
CGGGGCCTGGGCCTGGGACGGAGGCGTTGTCCCGTTCCCGGTCCGGCTCA
GTCAACCCGGCTGCCGCCACGGCAGCGGCGGCACTGGCGGCCCGGACGAG
GCAGATGGGGCTGCAGTTTGCCATGGACACGGTGCGGTATGCACCGGACA
GCGAGGTGCTGTCCTTCATGTTGCACCTCGTGCAGGCGAGCTTGGCCATG
GCCGCTTCCTCCTCCTCCGCAGACGGCCACACCCTCCTTGCAGGCTCTCC
TGCTCTCCGCACCCCCCCGCCCCCCAGCTGGACCCCGGAGAAGAAAACGC
TGTCGAACAACGATGTTTCGGGCCCCGGGGCCGCGGGGCCTGGGCCTGGG
ACGGAGGCGTTGTCCCGTTCCCGGTCCGGCTCAGTCAACCCGGCTGCCGC
CACGGCAGCGGCGGCACTGGCGGCCCGGACGAGGCAGATGGGGCTGCAGT
TTGCCATGGACACGGTGCGGTATGCACCGGACAGCGAGGTGCTGTCCTTC
ATGTTGCACCTCGTGCAGGGCCTTCGCTACGCCGCCAACGCGGCGACATC
GACATCGCTGCACCACCCCGCCCTCTCAACGGGCAGCGGCCACGGGGGCA
GCTCTAGCGGCAGCACACACGGCGGCAGCGCTAGCGGCAGCACCCATGGT
GGCAGCGGCCACCCGGTAGCCTCCCCCAAGCGGGGGCTCCCGCGCATCCT
CTTTGGGCCGGACCGTTCGCCCGCGAGGGCGGCAGGGGCAGGGGCGGGGG
CGGCGCCGGTGCCGGACACGTCTGCCTACCCGACCGAGGAGTCCGCCGTG
TCACCGCCGCAGCGTGCCTCCTCCTTCCCCGGCCTTCGCTACGCCGCCAA
CGCGGCGACATCGACATCGCTGCACCACCCCGCCCTCTCAACGGGCAGCG
GCCACGGGGGCAGCTCTAGCGGCAGCACACACGGCGGCAGCGCTAGCGGC
AGCACCCATGGTGGCAGCGGCCACCCGGTAGCCTCCCCCAAGCGGGGGCT
CCCGCGCATCCTCTTTGGGCCGGACCGTTCGCCCGCGAGGGCGGCAGGGG
CAGGGGCGGGGGCGGCGCCGGTGCCGGACACGTCTGCCTACCCGACCGAG
GAGTCCGCCGTGTCACCGCCGCAGCGTGCCTCCTCCTTCCCC
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