mRNA_S-ischiensis_contig8.19422.1 (mRNA) Schizocladia ischiensis KU_0333
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19422.1 vs. uniprot
Match: D8LLJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLJ6_ECTSI) HSP 1 Score: 153 bits (386), Expect = 4.830e-45 Identity = 76/130 (58.46%), Postives = 93/130 (71.54%), Query Frame = 1
Query: 37 MPFYQQIATLKPRTNPADLTRIFRAVADAIVKRGGVVRAVQNHGVRPLPYRFRSKHVVGD-ESRYQQSGRWVSTYFDASPATLEAAAQVLRAEERVLRVSNLRPKVKMDSIRSTHRRSNPWELERQRRQG 423
M FYQQI TL+PRTNP DLT IFR A I++ GGVVR+V NHGVR LPYRF SKH + + + R+ SGRW S Y+DASPA + + L AE++V+RVS RP KMD I STH RSNPW++E + R G
Sbjct: 1 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPATKMDRIASTHERSNPWDMEWRNRNG 130
BLAST of mRNA_S-ischiensis_contig8.19422.1 vs. uniprot
Match: A0A835Z0N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N7_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.180e-30 Identity = 58/124 (46.77%), Postives = 84/124 (67.74%), Query Frame = 1
Query: 37 MPFYQQIATLKPRTNPADLTRIFRAVADAIVKRGGVVRAVQNHGVRPLPYRFRSKHVV-GDESRYQQSGRWVSTYFDASPATLEAAAQVLRAEERVLRVSNLRPKVKMDSIRSTHRRSNPWELE 405
MPFYQ + T K RT P LTR++R + + +++ GG+VR V+NHGV+ L YRFR++ + G E+RY GRWVS YFDA P TL+ L+ ++ LR + ++P VKM+ I ST ++NPWE +
Sbjct: 1 MPFYQNVFTCKWRTPPEQLTRLYRRLCNTVLEDGGMVRCVENHGVKDLAYRFRARTAMSGSENRYHTRGRWVSMYFDARPETLDKIDADLKMQDFYLRSNTIKPVVKMNWI-STRHKTNPWERD 123
BLAST of mRNA_S-ischiensis_contig8.19422.1 vs. uniprot
Match: A0A7S2V599_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V599_9STRA) HSP 1 Score: 115 bits (287), Expect = 4.650e-30 Identity = 57/121 (47.11%), Postives = 77/121 (63.64%), Query Frame = 1
Query: 37 MPFYQQIATLKPRTNPADLTRIFRAVADAIVKRGGVVRAVQNHGVRPLPYRFRSKHVVGDESRYQQSGRWVSTYFDASPATLEAAAQVLRAEERVLRVSNLRPKVKMDSIRSTHRRSNPWE 399
MP Y Q T+KP DL + +A I K GGVVR V+NHG+R LPYRFRS+H E RY GR++ST+FDASP TL+ +L +E +LR +NL+PK M++ R++ + N WE
Sbjct: 1 MPLYHQFLTMKPEAASKDLLKTLKACIQVIQKNGGVVRQVENHGIRTLPYRFRSRHASPGEGRYFYFGRFISTFFDASPTTLKELDDILGLDENMLRRTNLKPKSLMEAARAS--KHNLWE 119
BLAST of mRNA_S-ischiensis_contig8.19422.1 vs. uniprot
Match: A0A7S1YM88_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YM88_9STRA) HSP 1 Score: 100 bits (250), Expect = 9.320e-24 Identity = 47/120 (39.17%), Postives = 79/120 (65.83%), Query Frame = 1
Query: 37 MPFYQQIATLKPRTNPADLTRIFRAVADAIVKRGGVVRAVQNHGVRPLPYRFRSKHVVGDESRYQQSGRWVSTYFDASPATLEAAAQVLRAEERVLRVSNLRPKVKMDSIRSTHRRSNPW 396
M FY+ + T K LT + + ++ +V+ GG+VR+VQNHG+R L +RFR++H D +R Q GR++S Y+D+SPA E ++L +E VLR ++LR + K+D+I + +++ NP+
Sbjct: 1 MVFYECVITAKNTAPFYQLTSLMKEISLKVVENGGIVRSVQNHGIRDLAHRFRARHPDRDGTRLFQKGRFISVYYDSSPAIQEEVGEILVMDENVLRATHLRARNKLDTINNPYQKKNPY 120
BLAST of mRNA_S-ischiensis_contig8.19422.1 vs. uniprot
Match: A0A6S8YXD6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YXD6_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.810e-22 Identity = 42/120 (35.00%), Postives = 79/120 (65.83%), Query Frame = 1
Query: 37 MPFYQQIATLKPRTNPADLTRIFRAVADAIVKRGGVVRAVQNHGVRPLPYRFRSKHVVGDESRYQQSGRWVSTYFDASPATLEAAAQVLRAEERVLRVSNLRPKVKMDSIRSTHRRSNPW 396
M FY+ + T K + A LT ++++ +V+ GG+VR VQNHG+R LP+RF++++ + +RY + GR++S ++DASP TL +R ++++LR ++L+ + K+ I + + + NP+
Sbjct: 1 MVFYECVLTAKNTASFASLTNTVKSISSIVVESGGIVRTVQNHGIRNLPHRFKARYPDKEGNRYYKEGRFISVWYDASPRTLNQVENEIRLDDQILRYTHLKARNKLWYINNPNEKKNPY 120
BLAST of mRNA_S-ischiensis_contig8.19422.1 vs. uniprot
Match: A0A6T7JZ88_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A6T7JZ88_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 2.010e-22 Identity = 45/120 (37.50%), Postives = 77/120 (64.17%), Query Frame = 1
Query: 37 MPFYQQIATLKPRTNPADLTRIFRAVADAIVKRGGVVRAVQNHGVRPLPYRFRSKHVVGDESRYQQSGRWVSTYFDASPATLEAAAQVLRAEERVLRVSNLRPKVKMDSIRSTHRRSNPW 396
M FY+ + T K +LT + + V+ +V+RGG+VR+VQNHG+R LP+RF++K+ + +RY + GR++S ++DASP E +L +E VLR ++L+P+ K+ + + NP+
Sbjct: 1 MVFYECVLTAKNTAPFMNLTNLMKTVSLKVVERGGIVRSVQNHGIRDLPHRFKAKYPDKEGNRYYKKGRFISVFYDASPHAREEVQAILDLDEEVLRNTHLKPRNKVTYANIVNEKKNPY 120
BLAST of mRNA_S-ischiensis_contig8.19422.1 vs. uniprot
Match: A0A7S2MAY0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2MAY0_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 6.850e-22 Identity = 44/123 (35.77%), Postives = 76/123 (61.79%), Query Frame = 1
Query: 37 MPFYQQIATLKPRTNPADLTRIFRAVADAIVKRGGVVRAVQNHGVRPLPYRFRSKHVVGDESRYQQSGRWVSTYFDASPATLEAAAQVLRAEERVLRVSNLRPKVKMDSIRSTHRRSNPWELE 405
M FY+ + T K + +LT + + ++ IV GG+VR++QNHGVR LP+RFR+K+ + +RY + GR+VS ++DASP + +L +E++LR ++L+ + K + + NP+ E
Sbjct: 1 MVFYECLMTAKNTAHYNNLTALMKDISLKIVNNGGIVRSIQNHGVRQLPHRFRAKYADREGNRYYEKGRFVSVFYDASPGIMRQVEGILNLDEQILRNTHLKGRNKFMDVNNVREAKNPYIQE 123
BLAST of mRNA_S-ischiensis_contig8.19422.1 vs. uniprot
Match: A0A7S2IGM9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IGM9_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 3.680e-21 Identity = 41/120 (34.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query: 37 MPFYQQIATLKPRTNPADLTRIFRAVADAIVKRGGVVRAVQNHGVRPLPYRFRSKHVVGDESRYQQSGRWVSTYFDASPATLEAAAQVLRAEERVLRVSNLRPKVKMDSIRSTHRRSNPW 396
M FY+ + T K LT++ + ++ +V+ GG+VR VQNHG+R LP+RF++K+ + +RY + GR++S ++DASP L +R ++++LR ++L+ + K+ I + NP+
Sbjct: 1 MVFYECVLTAKNTAPFTSLTKLMKTISSTVVENGGIVRTVQNHGIRNLPHRFKAKYPDKEGNRYYKKGRFISVWYDASPRVLAKVENEIRLDDQILRHTHLKARNKLWYINIASEKKNPY 120
BLAST of mRNA_S-ischiensis_contig8.19422.1 vs. uniprot
Match: K0TLA5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLA5_THAOC) HSP 1 Score: 92.4 bits (228), Expect = 7.460e-21 Identity = 42/120 (35.00%), Postives = 74/120 (61.67%), Query Frame = 1
Query: 37 MPFYQQIATLKPRTNPADLTRIFRAVADAIVKRGGVVRAVQNHGVRPLPYRFRSKHVVGDESRYQQSGRWVSTYFDASPATLEAAAQVLRAEERVLRVSNLRPKVKMDSIRSTHRRSNPW 396
M FY+ + T K T+ LT + + V+ IV+ GG+VR++QNHG+R LP+RF+SK+ + +RY + GR++S ++D++P T + +L E +LR ++LR + + + NP+
Sbjct: 39 MVFYECLMTAKNTTHYNLLTSLMKEVSHKIVENGGIVRSIQNHGIRQLPHRFKSKYADREGNRYYEKGRFISVFYDSNPVTAKQVETILNLNEEILRNTHLRASNRFNEVNDLLESRNPY 158
BLAST of mRNA_S-ischiensis_contig8.19422.1 vs. uniprot
Match: A0A7S2S5L1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S5L1_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 3.360e-20 Identity = 48/132 (36.36%), Postives = 81/132 (61.36%), Query Frame = 1
Query: 37 MPFYQQIATLKPRTNPADLTRIFRAVADAIVKRGGVVRAVQNHGVRPLPYRFRSKHVVGDESRYQQSGRWVSTYFDASPATLEAAAQVLRAEER--VLRVSNLRPKVKMDSIRSTHRRSNPW-----ELERQ 411
M FY+ + T + + A LTR+ + V+ +V GG+VR+VQNHG+R LPYRF++K+ G+ +RY + GR+ S ++DASP T + +L+ +E +LR ++L + + I + NP+ E+E+Q
Sbjct: 1 MVFYECVITTRNTASFAILTRLVKNVSHKVVSNGGIVRSVQNHGIRDLPYRFKAKYPDGEGNRYYKKGRFFSIFYDASPKTQKEVESILKLDEDNIMLRGTHLNTRNPLLDINIANANKNPYLKQVIEMEQQ 132 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19422.1 >prot_S-ischiensis_contig8.19422.1 ID=prot_S-ischiensis_contig8.19422.1|Name=mRNA_S-ischiensis_contig8.19422.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=145bp APRSASDTAVLGMPFYQQIATLKPRTNPADLTRIFRAVADAIVKRGGVVRback to top mRNA from alignment at S-ischiensis_contig8:1347733..1349548+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19422.1 ID=mRNA_S-ischiensis_contig8.19422.1|Name=mRNA_S-ischiensis_contig8.19422.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1816bp|location=Sequence derived from alignment at S-ischiensis_contig8:1347733..1349548+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:1347733..1349548+ >mRNA_S-ischiensis_contig8.19422.1 ID=mRNA_S-ischiensis_contig8.19422.1|Name=mRNA_S-ischiensis_contig8.19422.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=870bp|location=Sequence derived from alignment at S-ischiensis_contig8:1347733..1349548+ (Schizocladia ischiensis KU_0333)back to top |