mRNA_S-ischiensis_contig8.19419.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19419.1
Unique NamemRNA_S-ischiensis_contig8.19419.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1337637..1338232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size596
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19419.1prot_S-ischiensis_contig8.19419.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1337834..1338196 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.4744773-UTR-S-ischiensis_contig8:1337636..13378331622817266.4744773-UTR-S-ischiensis_contig8:1337636..1337833Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1337637..1337833 +
1695740980.9456074-UTR-S-ischiensis_contig8:1337636..13378331695740980.9456074-UTR-S-ischiensis_contig8:1337636..1337833Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1337637..1337833 +
1622817266.5005662-UTR-S-ischiensis_contig8:1338196..13382321622817266.5005662-UTR-S-ischiensis_contig8:1338196..1338232Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1338197..1338232 +
1695740980.971509-UTR-S-ischiensis_contig8:1338196..13382321695740980.971509-UTR-S-ischiensis_contig8:1338196..1338232Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1338197..1338232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.4886882-CDS-S-ischiensis_contig8:1337833..13381961622817266.4886882-CDS-S-ischiensis_contig8:1337833..1338196Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1337834..1338196 +
1695740980.956282-CDS-S-ischiensis_contig8:1337833..13381961695740980.956282-CDS-S-ischiensis_contig8:1337833..1338196Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1337834..1338196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19419.1

>prot_S-ischiensis_contig8.19419.1 ID=prot_S-ischiensis_contig8.19419.1|Name=mRNA_S-ischiensis_contig8.19419.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=121bp
MPPCTVPPPHCLLHAGQVTSLGPKNRGPVQVARNVRHPTGGERGLSGKSP
VLRVIAHTRKTSIHGYYCYETKVIREHTQPHNVRLYLVTTYMNHDTTQGK
HILQKYEYSTHVGGGGGQPL*
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mRNA from alignment at S-ischiensis_contig8:1337637..1338232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19419.1 ID=mRNA_S-ischiensis_contig8.19419.1|Name=mRNA_S-ischiensis_contig8.19419.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=596bp|location=Sequence derived from alignment at S-ischiensis_contig8:1337637..1338232+ (Schizocladia ischiensis KU_0333)
CTCTGCTGTACAAGCAGGCGCGGAGGACCCCAAGTGGGCGTCCGGAGGGG
GGGGCAATGGGGGGCGCTCCTCGGCAGGCGTCTACTACTTCGAAGTACAT
TGTAGCATGCACGTTAATTTTCCTTGTGCGGCATGATGAGGACGACGCTT
GATTTCCCGCTCAGGCCGATGCACAAGACGTGGGGACGGTGAAGCGAATG
CCCCCCTGCACTGTCCCCCCGCCGCATTGCCTCTTGCACGCGGGGCAAGT
GACATCTCTAGGCCCTAAAAACAGGGGCCCCGTGCAGGTCGCAAGAAATG
TCCGTCACCCCACGGGTGGTGAAAGAGGCCTGAGCGGGAAATCACCCGTC
CTCCGCGTCATCGCACACACGAGGAAAACCAGCATCCATGGATATTATTG
TTACGAGACTAAAGTAATACGAGAACACACACAACCCCACAACGTGCGAT
TGTACCTCGTTACAACTTATATGAATCACGACACCACACAAGGCAAACAC
ATACTTCAGAAGTACGAGTACTCTACCCATGTGGGGGGTGGGGGCGGGCA
GCCCCTTTAGGCTCCCCAGGCAACACACCATGGAATAGCGCAGCGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1337637..1338232+

>mRNA_S-ischiensis_contig8.19419.1 ID=mRNA_S-ischiensis_contig8.19419.1|Name=mRNA_S-ischiensis_contig8.19419.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=726bp|location=Sequence derived from alignment at S-ischiensis_contig8:1337637..1338232+ (Schizocladia ischiensis KU_0333)
ATGCCCCCCTGCACTGTCCCCCCGCCGCATTGCCTCTTGCACGCGGGGCA
AGTGACATCTCTAGGCCCTAAAAACAGGGGCCCCGTGCAGGTCGCAAGAA
ATGTCCGTCACCCCACGGGTGGTGAAAGAGGCCTGAGCGGGAAATCACCC
GTCCTCCGCGTCATCGCACACACGAGGAAAACCAGCATCCATGGATATTA
TTGTTACGAGACTAAAGTAATACGAGAACACACACAACCCCACAACGTGC
GATTGTACCTCGTTACAACTTATATGAATCACGACACCACACAAGGCAAA
CACATACTTCAGAAGTACGAGTACTCTACCCATGTGGGGGGTGGGGGCGG
GCAGCCCCTTTAGATGCCCCCCTGCACTGTCCCCCCGCCGCATTGCCTCT
TGCACGCGGGGCAAGTGACATCTCTAGGCCCTAAAAACAGGGGCCCCGTG
CAGGTCGCAAGAAATGTCCGTCACCCCACGGGTGGTGAAAGAGGCCTGAG
CGGGAAATCACCCGTCCTCCGCGTCATCGCACACACGAGGAAAACCAGCA
TCCATGGATATTATTGTTACGAGACTAAAGTAATACGAGAACACACACAA
CCCCACAACGTGCGATTGTACCTCGTTACAACTTATATGAATCACGACAC
CACACAAGGCAAACACATACTTCAGAAGTACGAGTACTCTACCCATGTGG
GGGGTGGGGGCGGGCAGCCCCTTTAG
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