mRNA_S-ischiensis_contig8.19418.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19418.1
Unique NamemRNA_S-ischiensis_contig8.19418.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19418.1 vs. uniprot
Match: D8LLJ7_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ7_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 1.130e-82
Identity = 126/150 (84.00%), Postives = 134/150 (89.33%), Query Frame = 2 
Query:  272 MASPDPQIAEAVARGNPVVFFDVSIGGQEAGRIKAELFADVCPKTAKNFLQFCTGEYRHQGLPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFQLRHDEPGMLSMANSGPNTNGCQFFITCRKTDWLDGKHVVFGKV 721
            MASPDP IAEAVARGNPVVFFDV+IGG  AGRIK ELF D CPKTA+NF +FCTGE+RHQG+P GYKG+PFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENF LRH  PG+LSMANSGPNTNGCQFF+T  K  WLDG HVVFGKV
Sbjct:    1 MASPDPAIAEAVARGNPVVFFDVTIGGAPAGRIKMELFKDTCPKTAENFRRFCTGEHRHQGIPTGYKGAPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFDLRHTGPGLLSMANSGPNTNGCQFFVTTAKAAWLDGLHVVFGKV 150
[Close]
BLAST of mRNA_S-ischiensis_contig8.19418.1 vs. uniprot
Match: A0A835Z972_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z972_9STRA)

HSP 1 Score: 259 bits (663), Expect = 1.720e-77
Identity = 118/150 (78.67%), Postives = 129/150 (86.00%), Query Frame = 2 
Query:  272 MASPDPQIAEAVARGNPVVFFDVSIGGQEAGRIKAELFADVCPKTAKNFLQFCTGEYRHQGLPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFQLRHDEPGMLSMANSGPNTNGCQFFITCRKTDWLDGKHVVFGKV 721
            MASPDP +AEAV RG+PVVF D++IGG E GRIK ELFADVCPKTA+NF QFCTGE++ Q LP GYKG+PFHRVIK FM+QGGDFVKGDGTGRMSIYGEKF DENF LRH  PG+LS ANSGPNTNGCQFF T  K +WLDGKH VFGKV
Sbjct:    1 MASPDPAVAEAVDRGSPVVFMDIAIGGTEMGRIKIELFADVCPKTAENFRQFCTGEFKRQNLPVGYKGAPFHRVIKGFMIQGGDFVKGDGTGRMSIYGEKFDDENFDLRHTGPGLLSSANSGPNTNGCQFFFTLAKAEWLDGKHTVFGKV 150
[Close]
BLAST of mRNA_S-ischiensis_contig8.19418.1 vs. uniprot
Match: A0A7S2DPX7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPX7_9STRA)

HSP 1 Score: 250 bits (639), Expect = 5.230e-74
Identity = 111/148 (75.00%), Postives = 128/148 (86.49%), Query Frame = 2 
Query:  278 SPDPQIAEAVARGNPVVFFDVSIGGQEAGRIKAELFADVCPKTAKNFLQFCTGEYRHQGLPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFQLRHDEPGMLSMANSGPNTNGCQFFITCRKTDWLDGKHVVFGKV 721
            S DP + EAV RGNPVVFFD++IGG  AGRIK ELFAD CPKTA+NF QFCTGE+R    P GYKGSPFHR+I++FM+Q GDF+K DGTGR+SIYGEKF DE+F LRH+EPG+LSMANSGPNTNGCQFF+TC + +WLDGKHVVFGKV
Sbjct:    5 SADPAVLEAVERGNPVVFFDITIGGVPAGRIKMELFADECPKTAENFRQFCTGEFRRANHPVGYKGSPFHRIIREFMIQAGDFLKQDGTGRISIYGEKFEDESFSLRHNEPGLLSMANSGPNTNGCQFFLTCARCEWLDGKHVVFGKV 152
[Close]
BLAST of mRNA_S-ischiensis_contig8.19418.1 vs. uniprot
Match: A0A7S2BCB3_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCB3_9STRA)

HSP 1 Score: 250 bits (639), Expect = 7.830e-74
Identity = 112/148 (75.68%), Postives = 127/148 (85.81%), Query Frame = 2 
Query:  278 SPDPQIAEAVARGNPVVFFDVSIGGQEAGRIKAELFADVCPKTAKNFLQFCTGEYRHQGLPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFQLRHDEPGMLSMANSGPNTNGCQFFITCRKTDWLDGKHVVFGKV 721
            S DP +AEAV RGNPVVFFD++IGG  AGRIK ELFAD CP+TA+NF +FCTGE+R    P GYK SPFHR+IK+FM+QGGDF+K DGTGRMSIYGE+F DENF LRH  PG+LSMANSGPNTNGCQFF+TC K +WLDGKHVVFGKV
Sbjct:   17 SADPAVAEAVERGNPVVFFDMTIGGVPAGRIKMELFADECPRTAENFRKFCTGEFRRSNHPVGYKDSPFHRIIKEFMIQGGDFLKQDGTGRMSIYGERFDDENFNLRHSAPGLLSMANSGPNTNGCQFFLTCAKCEWLDGKHVVFGKV 164
[Close]
BLAST of mRNA_S-ischiensis_contig8.19418.1 vs. uniprot
Match: K8YRK9_NANGC (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRK9_NANGC)

HSP 1 Score: 247 bits (631), Expect = 5.190e-73
Identity = 114/146 (78.08%), Postives = 123/146 (84.25%), Query Frame = 2 
Query:  284 DPQIAEAVARGNPVVFFDVSIGGQEAGRIKAELFADVCPKTAKNFLQFCTGEYRHQGLPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFQLRHDEPGMLSMANSGPNTNGCQFFITCRKTDWLDGKHVVFGKV 721
            D  + EAV RGNPVVF DVSI  + AGRIK ELF DV PKT +NF QFCTGEYR  GLP GYKGSPFHRVIKDFM+QGGDF+KGDG+G  SIYG+KFADENF LRH  PG+LSMANSGPNTNGCQFFITC K +WLDGKHVVFGKV
Sbjct:    3 DSAVLEAVNRGNPVVFLDVSIANRPAGRIKMELFKDVVPKTVENFRQFCTGEYRESGLPLGYKGSPFHRVIKDFMIQGGDFMKGDGSGLKSIYGDKFADENFDLRHTGPGLLSMANSGPNTNGCQFFITCDKCEWLDGKHVVFGKV 148
[Close]
BLAST of mRNA_S-ischiensis_contig8.19418.1 vs. uniprot
Match: A0A482RTU9_9ARCH (Peptidylprolyl isomerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTU9_9ARCH)

HSP 1 Score: 243 bits (621), Expect = 1.580e-71
Identity = 111/146 (76.03%), Postives = 121/146 (82.88%), Query Frame = 2 
Query:  284 DPQIAEAVARGNPVVFFDVSIGGQEAGRIKAELFADVCPKTAKNFLQFCTGEYRHQGLPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFQLRHDEPGMLSMANSGPNTNGCQFFITCRKTDWLDGKHVVFGKV 721
            DP ++ A+ RGNPVVFFDVSIGG  AGRI+ ELFADVCPKTA+NF QFC GEYR   LP GYK  PFHRVIK FM+QGGDF +GDGTG++SIYG  F DENF LRH   G+LSMANSGPNTNGCQFFITC K DWLDGKHVVFGKV
Sbjct:    2 DPTLSAAIERGNPVVFFDVSIGGVAAGRIRIELFADVCPKTAENFRQFCCGEYRRNTLPVGYKACPFHRVIKGFMIQGGDFERGDGTGKLSIYGSSFPDENFVLRHTGAGLLSMANSGPNTNGCQFFITCGKCDWLDGKHVVFGKV 147
[Close]
BLAST of mRNA_S-ischiensis_contig8.19418.1 vs. uniprot
Match: A0A8C4YHX7_9SAUR (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Gopherus evgoodei TaxID=1825980 RepID=A0A8C4YHX7_9SAUR)

HSP 1 Score: 241 bits (615), Expect = 5.570e-70
Identity = 119/179 (66.48%), Postives = 133/179 (74.30%), Query Frame = 2 
Query:  191 CQQQLQLPAEGNDHP--GGRLLWREWKVVMASPDPQIAEAVARGNPVVFFDVSIGGQEAGRIKAELFADVCPKTAKNFLQFCTGEYRHQGLPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFQLRHDEPGMLSMANSGPNTNGCQFFITCRKTDWLDGKHVVFGKV 721
            C +Q +  AEG   P  G    W    V+ A+P+          NPVVFFDVSIGGQE GR+K ELFADV PKTA+NF QFCTGE+R  G+P GYKGS FHRVIKDFM+QGGDFV GDGTG  SIY   FADENF+LRH  PG+LSMANSGP+TNGCQFFITC K DWLDGKHVVFGK+
Sbjct:   29 CLRQARHVAEGGRWPRSGSGSGWVAMAVLAANPN----------NPVVFFDVSIGGQEIGRMKVELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKI 197
[Close]
BLAST of mRNA_S-ischiensis_contig8.19418.1 vs. uniprot
Match: A0A452IV43_9SAUR (Peptidyl-prolyl cis-trans isomerase n=7 Tax=Durocryptodira TaxID=1579337 RepID=A0A452IV43_9SAUR)

HSP 1 Score: 241 bits (615), Expect = 1.070e-69
Identity = 119/179 (66.48%), Postives = 133/179 (74.30%), Query Frame = 2 
Query:  191 CQQQLQLPAEGNDHP--GGRLLWREWKVVMASPDPQIAEAVARGNPVVFFDVSIGGQEAGRIKAELFADVCPKTAKNFLQFCTGEYRHQGLPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFQLRHDEPGMLSMANSGPNTNGCQFFITCRKTDWLDGKHVVFGKV 721
            C +Q +  AEG   P  G    W    V+ A+P+          NPVVFFDVSIGGQE GR+K ELFADV PKTA+NF QFCTGE+R  G+P GYKGS FHRVIKDFM+QGGDFV GDGTG  SIY   FADENF+LRH  PG+LSMANSGP+TNGCQFFITC K DWLDGKHVVFGK+
Sbjct:   40 CLRQARHVAEGGRWPRSGSGSGWVAMAVLAANPN----------NPVVFFDVSIGGQEIGRMKVELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKI 208
[Close]
BLAST of mRNA_S-ischiensis_contig8.19418.1 vs. uniprot
Match: A0A7S3RA41_DUNTE (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3RA41_DUNTE)

HSP 1 Score: 238 bits (607), Expect = 1.550e-69
Identity = 108/142 (76.06%), Postives = 120/142 (84.51%), Query Frame = 2 
Query:  296 AEAVARGNPVVFFDVSIGGQEAGRIKAELFADVCPKTAKNFLQFCTGEYRHQGLPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFQLRHDEPGMLSMANSGPNTNGCQFFITCRKTDWLDGKHVVFGKV 721
            A A    NPVVFFDV+IGG  AGRIK ELFADVCPKT +NF QFCTGE+R QGLP GYKGS FHRVIK+FM+QGGDF+KGDGTG  SIYG +FADENF  +H  PG+LSMANSGPN+NGCQFFITC KTDW+D KHVVFG+V
Sbjct:    7 ARARNPSNPVVFFDVTIGGMPAGRIKMELFADVCPKTCENFRQFCTGEHRRQGLPVGYKGSSFHRVIKEFMIQGGDFLKGDGTGSTSIYGSRFADENFIAKHTGPGLLSMANSGPNSNGCQFFITCAKTDWIDNKHVVFGRV 148
[Close]
BLAST of mRNA_S-ischiensis_contig8.19418.1 vs. uniprot
Match: A0A485LRW0_9STRA (Peptidyl-prolyl cis-trans isomerase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485LRW0_9STRA)

HSP 1 Score: 238 bits (606), Expect = 2.150e-69
Identity = 108/146 (73.97%), Postives = 121/146 (82.88%), Query Frame = 2 
Query:  284 DPQIAEAVARGNPVVFFDVSIGGQEAGRIKAELFADVCPKTAKNFLQFCTGEYRHQGLPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEKFADENFQLRHDEPGMLSMANSGPNTNGCQFFITCRKTDWLDGKHVVFGKV 721
            DP +AEA+ +GN VVFFDV++GG   GRI+ ELF + CPKT +NF QFCTGEYR   LP GYK S FHRVIKDFM+QGGDF+KGDGTGRMSIYG+KFADEN  LRH E G+LSMANSGP TNGCQFFITC   DWLDGKHVVFGK+
Sbjct:    2 DPLLAEALRKGNVVVFFDVALGGAPLGRIRMELFKNECPKTVENFRQFCTGEYRRNELPVGYKASTFHRVIKDFMVQGGDFLKGDGTGRMSIYGDKFADENLTLRHTEAGLLSMANSGPGTNGCQFFITCGPCDWLDGKHVVFGKL 147
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLJ7_ECTSI1.130e-8284.00Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A835Z972_9STRA1.720e-7778.67Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7S2DPX7_9STRA5.230e-7475.00Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dictyo... [more]
A0A7S2BCB3_9STRA7.830e-7475.68Peptidyl-prolyl cis-trans isomerase n=1 Tax=Floren... [more]
K8YRK9_NANGC5.190e-7378.08Peptidyl-prolyl cis-trans isomerase n=3 Tax=Monodo... [more]
A0A482RTU9_9ARCH1.580e-7176.03Peptidylprolyl isomerase n=1 Tax=archaeon TaxID=19... [more]
A0A8C4YHX7_9SAUR5.570e-7066.48Peptidyl-prolyl cis-trans isomerase n=1 Tax=Gopher... [more]
A0A452IV43_9SAUR1.070e-6966.48Peptidyl-prolyl cis-trans isomerase n=7 Tax=Durocr... [more]
A0A7S3RA41_DUNTE1.550e-6976.06Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dunali... [more]
A0A485LRW0_9STRA2.150e-6973.97Peptidyl-prolyl cis-trans isomerase n=5 Tax=Aphano... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1331615..1337178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score274.2
Seed ortholog evalue4.6e-71
Seed eggNOG ortholog2880.D8LLJ7
Preferred namePPIH
KEGG koko:K09567
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006457,GO:0006464,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0022607,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033218,GO:0034641,GO:0036211,GO:0042277,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045069,GO:0045070,GO:0045292,GO:0046483,GO:0046540,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0065003,GO:0065007,GO:0070013,GO:0071001,GO:0071704,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140096,GO:1901360,GO:1901564,GO:1903900,GO:1903902,GO:1990904
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0879@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclophilin-type peptidyl-prolyl cis-trans isomerase
Ec32 orthologEc-04_005600.1
Exons4
Model size2793
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19418.1prot_S-ischiensis_contig8.19418.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1331886..1335241 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817280.4508622-UTR-S-ischiensis_contig8:1331614..13318851622817280.4508622-UTR-S-ischiensis_contig8:1331614..1331885Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1331615..1331885 +
1695740991.9535282-UTR-S-ischiensis_contig8:1331614..13318851695740991.9535282-UTR-S-ischiensis_contig8:1331614..1331885Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1331615..1331885 +
1622817280.512085-UTR-S-ischiensis_contig8:1335241..13371781622817280.512085-UTR-S-ischiensis_contig8:1335241..1337178Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1335242..1337178 +
1695740992.026183-UTR-S-ischiensis_contig8:1335241..13371781695740992.026183-UTR-S-ischiensis_contig8:1335241..1337178Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1335242..1337178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817280.4663646-CDS-S-ischiensis_contig8:1331885..13319151622817280.4663646-CDS-S-ischiensis_contig8:1331885..1331915Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1331886..1331915 +
1695740991.9697118-CDS-S-ischiensis_contig8:1331885..13319151695740991.9697118-CDS-S-ischiensis_contig8:1331885..1331915Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1331886..1331915 +
1622817280.4770799-CDS-S-ischiensis_contig8:1333171..13333211622817280.4770799-CDS-S-ischiensis_contig8:1333171..1333321Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1333172..1333321 +
1695740991.9831553-CDS-S-ischiensis_contig8:1333171..13333211695740991.9831553-CDS-S-ischiensis_contig8:1333171..1333321Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1333172..1333321 +
1622817280.4887276-CDS-S-ischiensis_contig8:1333964..13341181622817280.4887276-CDS-S-ischiensis_contig8:1333964..1334118Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1333965..1334118 +
1695740991.9958837-CDS-S-ischiensis_contig8:1333964..13341181695740991.9958837-CDS-S-ischiensis_contig8:1333964..1334118Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1333965..1334118 +
1622817280.5006247-CDS-S-ischiensis_contig8:1334990..13352411622817280.5006247-CDS-S-ischiensis_contig8:1334990..1335241Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1334991..1335241 +
1695740992.0141132-CDS-S-ischiensis_contig8:1334990..13352411695740992.0141132-CDS-S-ischiensis_contig8:1334990..1335241Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1334991..1335241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19418.1

>prot_S-ischiensis_contig8.19418.1 ID=prot_S-ischiensis_contig8.19418.1|Name=mRNA_S-ischiensis_contig8.19418.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=195bp
MASPDPQIAEAVARGNPVVFFDVSIGGQEAGRIKAELFADVCPKTAKNFL
QFCTGEYRHQGLPAGYKGSPFHRVIKDFMLQGGDFVKGDGTGRMSIYGEK
FADENFQLRHDEPGMLSMANSGPNTNGCQFFITCRKTDWLDGKHVVFGKV
HTCVCARTRAHARTGACVLFAFSWTCTPLCAHADHHSPERRELL*
back to top

mRNA from alignment at S-ischiensis_contig8:1331615..1337178+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19418.1 ID=mRNA_S-ischiensis_contig8.19418.1|Name=mRNA_S-ischiensis_contig8.19418.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5564bp|location=Sequence derived from alignment at S-ischiensis_contig8:1331615..1337178+ (Schizocladia ischiensis KU_0333)
GGCAGACGGCCGCACGGCGACGATCCTGGACACACGCTCAAAGACGAGCG
AGGGGTGTCCTGATCCCAATAAGAGAGTGCAAGGCGGAGGGGGTCTCTGC
CACGCTGCCTGGCCGCCCGGGGAGCGCAGTGCTTTTAATTGGGAAGGTAT
CAAGGGGCACATCGGCGCGGGGGATCCGACATCATTTTGTTGCCAGCAGC
AGCTGCAGCTCCCGGCGGAGGGAAACGACCATCCAGGAGGACGTCTTTTG
TGGCGCGAGTGGAAGGTCGTAATGGCATCCCCCGATCCTCAAATTGCGGA
GGTGAGCGCTGGTGCTGGCGAACGTCCTGCATCCCAAAGGTCTACTGACC
GCACTGAGTGCTTCGAAGGAGCAAAGTGTGACTCCCCGTGGCAGGCCGCC
TGGCCAGTTCACTTTCTGCCACCACACAAAGCACCAGCAATGGTGGCGAA
AGGTACACCCTCGACATGGACATATGCTTGTCTGGTGGCGATTGCCCAAA
GCAAATCCCTGAACACCAGGTGGCAAACCAAGCGGCGCGATGCCTTCTCT
AAGCAGGCCCAGCGTCTGGAGAATAGTATTGCAGTACACGCTTTGCTGTG
CTGCGCCCAGGCCCCACGCGTGTCCCATTTTTTCCACGTGTCCGGGCCAT
ACTGTGCTGCCGAGTACAGTAAGTACTTGGACAGTATCAGCAGTACAGTA
CTGTACACGATAGTTTTAAGCGGTACTGTGCTGTGCTACTGTTGTGAGCA
CTGATTTCTTGTGCCCCTAGACGCCTTCCCTTCGATTGGGCGATGGCTAG
ATCGCATGGCTGGCCCCTTCCCCCCCCCCCGCTCCCCCAGGGGATATCTA
CAGGTACTCGCATGTATGTAGAGCTCTACTCATGATCACTTGCATGGTCT
CCTCCGCATGCTGTGCACACCCTAGTCATTGCACTTCGGCCATCGACCCC
CGCGTCCCTACTAAGCCGGGACGGAGCATGTCGGTTTTTCACCAACCAGG
CAACATGTACAAGTTCATACCTCCAAGAACAAATGTATACGTTTACGTCC
GGGGGCTCGAGCGATGGGGAAGTGGCCGTGCAGCAAGAACCGAGCTTGAT
TTGGGAAGCTTCGACTGAAGCGACTGACGGGTTGCTGAATGGGGATCAAG
CAATGGGGAAGTGGCCGTGCTGCAAGAACCGAGCTTTGATTTGTGGAGCT
TCGACTGAAGTGACTGAAGGGTTGCTGAATACTCTCGGCAACTGCGGGCT
TCCAAACTTCTCCCCCGCCCACACCCCCTAGCATACGACCGCATTGGATA
CACATGCCATTCCACAGGCGACCTATAGACTGAAGTTACTGTACTGTACA
GCAGTCCACGTCCTATAGACTGAAGCTACTGTACTGTACAGTAGTCCACG
TCGGCTCCCGGCACCTGTACTTCGGGACCATAGTCTTTGCATCTTGGAAA
ATATCTTGGAATTTTGGAACCGTGCCGCACGTCACTGCACTTCATTCCAT
TGCGAACCCCCCACCAAAAAAAAAACATGTTTTTGGGTATGGGCGGGCCT
TGGGCAGGCCGTGGCGCGGGGGAACCCCGTCGTTTTCTTCGACGTGAGCA
TCGGGGGGCAGGAGGCGGGGCGCATAAAGGCGGAGCTGTTTGCGGACGTG
TGCCCCAAGACCGCAAAGAACTTCCTGCAGTTCTGCACCGGGGAGTACCG
GCACCAGGTTTGTGTAGAGTGCCACGTGGCGTCTGTAGGCGCGGGTACTC
GAGTACAGCAGGTAGCACTCTTTTGCTTTTGTTTTTGCTGTCGACACTCC
TAGAGTGCTCGTACAACTTTCAAGTAGCTGCGTGGACCAACCATTTCTAA
TAGCGTGTTTTTTGCAGTGAGCTTTCCTTTTACGGCCGCTCTTGGTCACC
GGCATGTTTTTTTTTTTTTTTCCAGCGGGTATGATCACTTTTCGACATCC
CCGGTGTGAAAAAGTGCGTTTGTTTTTAAGCCAGAGATGACCGAGACGTT
TTGGGAGGTTTCTATGAGGGCAGATGCGACATGCCTGCCCCGGTGATGCA
AGCCTTGATTTTAGGTCTACCCTTACTTACCTCTAATTAAGGGCCTAGAA
GGGCACCACGTAGGGGTTAAGTGCCAACCCTGGGCGCGAGAATGTGCCCG
TGCGTGGCCTGAGCCAAACGCATGAAGGCATACATCTGCCAGCACAATCC
AAGCCCCCGGCCCCAACCAGTATTTCAGCTCCGCTTTTCACCAGCTTATA
GCAATTCCCCGTGTAACGAGTCGCCGTCATTTGCTTTGAAAAACGCGTTG
CTTTGCTGCGTCATGTGAGACCGAAACGGCCGTAACGCGCACCCCCGCAG
GGGCTTCCCGCGGGGTACAAGGGGAGCCCATTCCACCGGGTGATCAAGGA
CTTCATGCTGCAGGGGGGGGACTTTGTCAAGGGCGACGGGACGGGCCGCA
TGAGCATATACGGGGAGAAGTTCGCGGACGAAAACTTCCAGCTCCGGCAC
GACGGTGAGGGCGGCTAGCTGCAGCAGGCGGCGTGCTTGGAAGTTCCTAG
TACGAGTAGTATATATACGAAGTATATACGAGTAGTACATGTACTACTGT
ACTCGTACGAGTACAGTATTGACAGGAAGAACACAGGGTGAGGTGCAGGC
TACTTACGCCACTAAGTTCAAGACCTCAACAGTGGCAAACGCCTTCCTTA
GCTCGCCAAGGGAGGGGTGTGTGGGGAAGGGGCGGGGAAAAAGGAGGAGG
GGGGCAGGGGGGAAAGGGAGATGAGGGAGGAGGAGGAAGGAGAGGAGGGG
AAGGGGGTGCCCCCGGGGGGAGGTGTGGCAGGCGACGATGCGGAGTAGGC
CGTGACAGAGTAGGCAGAGTCACCACGTCGCGCACCGGCGTAGGAATGTG
AGCAAGCAGGGATCACCGTGTACTGCTAGTATGCGGTAGTGCTGCGGGGT
CTTGCCACACGTTATTATTCCAAGGATACCCCGAACGCAAAAAGCACTAT
TTTTGTCTCGCCTCGAACTTTGATTTGGGAACCGGGAAGCAGCTTCTCAA
CGAGGGTCAATGGGTGTTCCCTTGTACAGAGGCGCATGCGATGTTCGATT
CCGGCAGCTTGCAGCCACTTCTATGGCATCGAGCAAGCTTTTTTTACCCG
CAGAATACCATGTGACAAACAGGGCCAAGTCCTCCCCCCTATCGTAGCAG
GACTCTCGTGCAGTAGCGGAGTCCTGCCGTTATACCTCTACCTTGAAGTG
TGTGCATGTCTGTTACGTAAGGCGTTGCCCAGAGCATGTACTTCGAAGTA
CATATATGCAACAATGTTTTTGAGCGCCCCCCCCACTCCCTTCCCTCCCG
CCCGGCTGCTGCCTCCGCCCCCGCAGAACCGGGCATGCTGTCCATGGCAA
ACAGCGGGCCCAACACAAACGGATGCCAGTTCTTCATCACGTGCCGGAAA
ACTGACTGGTTGGACGGCAAGCATGTTGTTTTTGGGAAGGTACACACGTG
TGTGTGTGCGCGCACGCGTGCGCATGCGCGCACCGGCGCCTGCGTGCTGT
TTGCATTCTCGTGGACGTGCACGCCTTTGTGTGCACATGCTGACCATCAC
TCCCCCGAGCGGAGAGAGTTGCTCTGATGTGCGGCTTTGGCCGGCGGAAA
AGCAAAAAAGCCCGCACTACCTATTCATCCCGCACAACCAAAAAATCGTT
CATCAGGGGCTCAGAAGCCCTGCGTGTCTAACGACGGGCACCTCGTGCTT
GGAAGCGCTACTGCTGTACTACAGTACGCAGATGAGTGCAGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCGTATCGGACAGGGAGC
TGCCCCGTCCTGTGCATGCATGCCATTACACACTGGCAGTACATGCAGCG
TGTGGTTCGATATCCGGCCGGACACGTGCAACACCCGCCTGCCCCCTTGT
TTGTGGAAAGGGCCCTGACCACGAGATTCAACGTCACGGTGACCCCTTGC
CCCCTCGCAGCCACCCCCCCGCGTCCGTCCGTCCGTCCGTCCGTGCCGCC
GCTGCCAGGTGATGGACGGGCCGTCCATGCTGACCGTCCGCAAGATAGAG
AACGTGCCCACCGTCGGAAACACCAACAAGCCCCGCCTACCGGTGGTGGT
CACACAATGCGGAGAGCTCTGACCGTGAACCCCAGACTTCAAGTTGATTG
AACCCAGTACAACTCCTTCGACTCGGAGCGTATTGCAGCTACTCGTACAT
CACAAGCCGCGGCCCGTGGCTCGCTGGGCCGGGCCCGTCGAGTGTTCCTA
GTGGGTCCTGAGTGAGGTACACGTTCCTTTGGAGTCAGCAAGCGAGTCCC
ACGTGGTCGTCTCCCTCAGGCTGCGCTGAAGGCACGCGTCGGGCTCAGGC
TCCGTGTCAGGCTGGGAGCGGCCCGTATCACCGCCGCTGTGGCAATGGGC
CAACTGAGAGTGTGCTTGAAGTGTGGCCCAATGCGCAATGGCAGCCGCAC
CATGGGTGCCGAGTCCAGGCCAAGTGAAGTTCTTCCAACTGCTTAGTACG
TGGGCGGCAGCACGAAATTCAACCGTGCTGAGTGAACTTATGCAGTTAGC
GTCCACTCAGTAGGTGGTGATTGGAAGTGCTGCGCCTACTCAATTGATAG
CCAGCTACCGGACACGGTACAGAGGCAAATAAGGAGTGACTGGAGTTCAC
AACATAGCCGACTACAGTAGTACTACAATATATGCTGTCGCCTCATGCGG
GACCCACCTGCATGCGCGACCCCCCCGTGCGGGACGCCCCTCCATGGGGG
GAATATTTGCTGAGCCAGCGCCACAGCAACATATACGTTTCGTACTTCGA
AGTTTATGCTTGCCGGGGCCATTGATTGCGTCCTCAACACGGGCAGAAGC
GGCACGGTGCTGGTTTCTCACTGTCTCACAACACTTGCTGACTCTTCGGC
ACTGCAAATGTACTGTGGTTGCTCAGGCTACACATACAGCATACTGGCAG
GGCGTGGAAAGCGGCTGGCACCTGGGACTAATCGAGGCCCGCCTGATTCA
GAAGTACCCACGCTGGGCCGCAGTTGCCGCTGCAGTGTACGTATAGTAGG
TGTGACGACCAAGGTTTGTACTGGGAAGTGTTTAATTTAAACTAAATCCG
CTGAGTGGCTTGCCATTGCAGATAGTACACCTACAACTTGTAGATGCCGA
CTCGGATATAAATCTAAAACACGACTCCTAGCCTGAGCCTGAGTGACTTA
GCACAGAACATTTGCTTGGCTGTCGCAGCAGGCAGCACACGCCGCGGCAG
TCGTTACGTGCGCCACACTGTGTGACAGCCCTTAGAACTCGGGCCGTCGA
GAGGTCCACTTGAGTGAACTCCCCTGGCCGACACCAGCGCGAGCACGCAG
AGACAGACACGCGCTGACACACCAGATTGCTGCCTGGAATATGGCGGGAT
ACCGTCACGGGCCCCTTCAAGTTGGTGCACGCCAAAGCACACAACTTTTC
TCTTAAGTGAGTTGCCTCCCTTGGCTCGAGGCGCGGCCGCCCGCCCTCCC
TCCTCCTGCCCGCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:1331615..1337178+

>mRNA_S-ischiensis_contig8.19418.1 ID=mRNA_S-ischiensis_contig8.19418.1|Name=mRNA_S-ischiensis_contig8.19418.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1170bp|location=Sequence derived from alignment at S-ischiensis_contig8:1331615..1337178+ (Schizocladia ischiensis KU_0333)
ATGGCATCCCCCGATCCTCAAATTGCGGAGATGGCATCCCCCGATCCTCA
AATTGCGGAGGCCGTGGCGCGGGGGAACCCCGTCGTTTTCTTCGACGTGA
GCATCGGGGGGCAGGAGGCGGGGCGCATAAAGGCGGAGCTGTTTGCGGAC
GTGTGCCCCAAGACCGCAAAGAACTTCCTGCAGTTCTGCACCGGGGAGTA
CCGGCACCAGGCCGTGGCGCGGGGGAACCCCGTCGTTTTCTTCGACGTGA
GCATCGGGGGGCAGGAGGCGGGGCGCATAAAGGCGGAGCTGTTTGCGGAC
GTGTGCCCCAAGACCGCAAAGAACTTCCTGCAGTTCTGCACCGGGGAGTA
CCGGCACCAGGGGCTTCCCGCGGGGTACAAGGGGAGCCCATTCCACCGGG
TGATCAAGGACTTCATGCTGCAGGGGGGGGACTTTGTCAAGGGCGACGGG
ACGGGCCGCATGAGCATATACGGGGAGAAGTTCGCGGACGAAAACTTCCA
GCTCCGGCACGACGGGGCTTCCCGCGGGGTACAAGGGGAGCCCATTCCAC
CGGGTGATCAAGGACTTCATGCTGCAGGGGGGGGACTTTGTCAAGGGCGA
CGGGACGGGCCGCATGAGCATATACGGGGAGAAGTTCGCGGACGAAAACT
TCCAGCTCCGGCACGACGAACCGGGCATGCTGTCCATGGCAAACAGCGGG
CCCAACACAAACGGATGCCAGTTCTTCATCACGTGCCGGAAAACTGACTG
GTTGGACGGCAAGCATGTTGTTTTTGGGAAGGTACACACGTGTGTGTGTG
CGCGCACGCGTGCGCATGCGCGCACCGGCGCCTGCGTGCTGTTTGCATTC
TCGTGGACGTGCACGCCTTTGTGTGCACATGCTGACCATCACTCCCCCGA
GCGGAGAGAGTTGCTCTGAAACCGGGCATGCTGTCCATGGCAAACAGCGG
GCCCAACACAAACGGATGCCAGTTCTTCATCACGTGCCGGAAAACTGACT
GGTTGGACGGCAAGCATGTTGTTTTTGGGAAGGTACACACGTGTGTGTGT
GCGCGCACGCGTGCGCATGCGCGCACCGGCGCCTGCGTGCTGTTTGCATT
CTCGTGGACGTGCACGCCTTTGTGTGCACATGCTGACCATCACTCCCCCG
AGCGGAGAGAGTTGCTCTGA
back to top