mRNA_S-ischiensis_contig8.19416.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19416.1
Unique NamemRNA_S-ischiensis_contig8.19416.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1284166..1284956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size793
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.4229655-CDS-S-ischiensis_contig8:1284165..12845911622817266.4229655-CDS-S-ischiensis_contig8:1284165..1284591Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1284166..1284591 +
1695740980.92096-CDS-S-ischiensis_contig8:1284165..12845911695740980.92096-CDS-S-ischiensis_contig8:1284165..1284591Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1284166..1284591 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.4346964-UTR-S-ischiensis_contig8:1284591..12849561622817266.4346964-UTR-S-ischiensis_contig8:1284591..1284956Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1284592..1284956 +
1695740980.93541-UTR-S-ischiensis_contig8:1284591..12849561695740980.93541-UTR-S-ischiensis_contig8:1284591..1284956Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1284592..1284956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19416.1prot_S-ischiensis_contig8.19416.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1284166..1284591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19416.1

>prot_S-ischiensis_contig8.19416.1 ID=prot_S-ischiensis_contig8.19416.1|Name=mRNA_S-ischiensis_contig8.19416.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=142bp
QQQHPPAHQPRLRADQLRHNPQLCRRRGLRGLSVGKQERAQRSAQGAFTD
EERQGWDGAGRKGGVGVPVLREQHRRGVLSRPSTPMWDSSLPWAMSPSGN
ARRRNDVRDVRSIREPCGLVVLTEAGPVSALLVSSSEFKQK*
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mRNA from alignment at S-ischiensis_contig8:1284166..1284956+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19416.1 ID=mRNA_S-ischiensis_contig8.19416.1|Name=mRNA_S-ischiensis_contig8.19416.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=791bp|location=Sequence derived from alignment at S-ischiensis_contig8:1284166..1284956+ (Schizocladia ischiensis KU_0333)
CAGCAACAGCACCCCCCCGCCCATCAGCCACGCCTCCGGGCGGATCAGCT
CCGCCACAACCCGCAGCTTTGCCGACGCCGAGGTTTGCGCGGGCTGTCCG
TGGGCAAACAAGAGAGGGCGCAGAGATCGGCGCAGGGAGCATTTACGGAC
GAGGAACGACAGGGGTGGGACGGAGCGGGGAGGAAAGGGGGGGTCGGTGT
TCCTGTCTTGAGAGAACAACACCGGCGTGGGGTTCTGAGTCGGCCGAGCA
CACCCATGTGGGATTCAAGCTTGCCTTGGGCAATGTCCCCCTCTGGAAAT
GCTCGACGCCGCAACGACGTTAGGGATGTGCGGTCAATTCGAGAGCCCTG
TGGGCTGGTGGTGTTGACTGAAGCAGGCCCTGTTTCGGCCCTTCTGGTCT
CTTCCAGCGAATTCAAGCAAAAGTGAACCTACCTACTTGACCACAATTGC
GCCATCGTCTGAGGTGCATTCCAGCGCCCGCCTAGCAGGCTGAGAAGATA
CTACAGTCGCAGTTGCACATTACCTCCCCTAATACGATGCCATATTTCCG
GTCGGGGTCCTGGTCTCTGCGGTTGACGGCTGCGCTATGGGTCGAGGCGC
ATCGACATACCAGGACGTGCGACGGAGCTGCAGTCGTGCCGAGCAATCGG
GACGCGTCCACGGCGAACGAACGGACCAACACCGCCCCATGGGTTGGAGG
CGGCTGACGAATCCAAAACCTGGGGCGCGGCCTGCGCTGGACGAGGCGAC
GGCCCAAACGCGACGCCATGGCCGTCTCCTCCGACTCAGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1284166..1284956+

>mRNA_S-ischiensis_contig8.19416.1 ID=mRNA_S-ischiensis_contig8.19416.1|Name=mRNA_S-ischiensis_contig8.19416.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=852bp|location=Sequence derived from alignment at S-ischiensis_contig8:1284166..1284956+ (Schizocladia ischiensis KU_0333)
CAGCAACAGCACCCCCCCGCCCATCAGCCACGCCTCCGGGCGGATCAGCT
CCGCCACAACCCGCAGCTTTGCCGACGCCGAGGTTTGCGCGGGCTGTCCG
TGGGCAAACAAGAGAGGGCGCAGAGATCGGCGCAGGGAGCATTTACGGAC
GAGGAACGACAGGGGTGGGACGGAGCGGGGAGGAAAGGGGGGGTCGGTGT
TCCTGTCTTGAGAGAACAACACCGGCGTGGGGTTCTGAGTCGGCCGAGCA
CACCCATGTGGGATTCAAGCTTGCCTTGGGCAATGTCCCCCTCTGGAAAT
GCTCGACGCCGCAACGACGTTAGGGATGTGCGGTCAATTCGAGAGCCCTG
TGGGCTGGTGGTGTTGACTGAAGCAGGCCCTGTTTCGGCCCTTCTGGTCT
CTTCCAGCGAATTCAAGCAAAAGTGACAGCAACAGCACCCCCCCGCCCAT
CAGCCACGCCTCCGGGCGGATCAGCTCCGCCACAACCCGCAGCTTTGCCG
ACGCCGAGGTTTGCGCGGGCTGTCCGTGGGCAAACAAGAGAGGGCGCAGA
GATCGGCGCAGGGAGCATTTACGGACGAGGAACGACAGGGGTGGGACGGA
GCGGGGAGGAAAGGGGGGGTCGGTGTTCCTGTCTTGAGAGAACAACACCG
GCGTGGGGTTCTGAGTCGGCCGAGCACACCCATGTGGGATTCAAGCTTGC
CTTGGGCAATGTCCCCCTCTGGAAATGCTCGACGCCGCAACGACGTTAGG
GATGTGCGGTCAATTCGAGAGCCCTGTGGGCTGGTGGTGTTGACTGAAGC
AGGCCCTGTTTCGGCCCTTCTGGTCTCTTCCAGCGAATTCAAGCAAAAGT
GA
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