mRNA_S-ischiensis_contig8.19404.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19404.1
Unique NamemRNA_S-ischiensis_contig8.19404.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19404.1 vs. uniprot
Match: D8LND9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND9_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.020e-28
Identity = 70/164 (42.68%), Postives = 91/164 (55.49%), Query Frame = 1 
Query:  160 QRTQAPAKLRDWRQEAYGPMMTKAVAEDDPEMLRWLWRHELVTVDAPDALGNTAAHLAVFHDSPRVL--RELHALGLDLSLPCDAQGLGSAAFHCSLLGRVDCLMALMEXXXXXXXXXXRYGRTPETVAARHDQGACADLVRTALAAPTLQRVGRGCLARRRAR 645
            +R+ APA  + W+Q+ YG MM +AV +DD E L W+ +H LV + A D LGNTAAHL VFHD PR++   EL  LG D+S PCD                                   R+GRTPETVA RHDQG    L+R +LA   +QR+ RG L R++A+
Sbjct:   64 ERSPAPAIFKAWQQDKYGTMMMQAVLQDDAESLTWMLKHNLVDLAATDDLGNTAAHLGVFHDFPRLVDGTELIDLGYDMSPPCD-----------------------------------RFGRTPETVAERHDQGGVRSLIRRSLALLDVQRLTRGFLGRQKAK 192
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LND9_ECTSI1.020e-2842.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1212642..1217479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-04_004200.1
Exons5
Model size705
Cds size687
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19404.1prot_S-ischiensis_contig8.19404.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1212660..1217479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817279.0029044-UTR-S-ischiensis_contig8:1212641..12126591622817279.0029044-UTR-S-ischiensis_contig8:1212641..1212659Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1212642..1212659 +
1695740990.6103592-UTR-S-ischiensis_contig8:1212641..12126591695740990.6103592-UTR-S-ischiensis_contig8:1212641..1212659Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1212642..1212659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817279.0141592-CDS-S-ischiensis_contig8:1212659..12128691622817279.0141592-CDS-S-ischiensis_contig8:1212659..1212869Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1212660..1212869 +
1695740990.6200037-CDS-S-ischiensis_contig8:1212659..12128691695740990.6200037-CDS-S-ischiensis_contig8:1212659..1212869Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1212660..1212869 +
1622817279.027572-CDS-S-ischiensis_contig8:1213655..12137801622817279.027572-CDS-S-ischiensis_contig8:1213655..1213780Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1213656..1213780 +
1695740990.6331804-CDS-S-ischiensis_contig8:1213655..12137801695740990.6331804-CDS-S-ischiensis_contig8:1213655..1213780Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1213656..1213780 +
1622817279.0381372-CDS-S-ischiensis_contig8:1214060..12141181622817279.0381372-CDS-S-ischiensis_contig8:1214060..1214118Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1214061..1214118 +
1695740990.6489513-CDS-S-ischiensis_contig8:1214060..12141181695740990.6489513-CDS-S-ischiensis_contig8:1214060..1214118Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1214061..1214118 +
1622817279.04953-CDS-S-ischiensis_contig8:1216026..12161271622817279.04953-CDS-S-ischiensis_contig8:1216026..1216127Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1216027..1216127 +
1695740990.6684678-CDS-S-ischiensis_contig8:1216026..12161271695740990.6684678-CDS-S-ischiensis_contig8:1216026..1216127Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1216027..1216127 +
1622817279.0604668-CDS-S-ischiensis_contig8:1217286..12174791622817279.0604668-CDS-S-ischiensis_contig8:1217286..1217479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1217287..1217479 +
1695740990.6796768-CDS-S-ischiensis_contig8:1217286..12174791695740990.6796768-CDS-S-ischiensis_contig8:1217286..1217479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1217287..1217479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19404.1

>prot_S-ischiensis_contig8.19404.1 ID=prot_S-ischiensis_contig8.19404.1|Name=mRNA_S-ischiensis_contig8.19404.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=229bp
MEAASPQGEQWHNVGGDEQEAAVVEEDGEESDTAVDPAPASASFLNVQRT
QAPAKLRDWRQEAYGPMMTKAVAEDDPEMLRWLWRHELVTVDAPDALGNT
AAHLAVFHDSPRVLRELHALGLDLSLPCDAQGLGSAAFHCSLLGRVDCLM
ALMELGYDVSAPCDRYGRTPETVAARHDQGACADLVRTALAAPTLQRVGR
GCLARRRARGLRERRRLAGLAEAGVGQAG
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mRNA from alignment at S-ischiensis_contig8:1212642..1217479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19404.1 ID=mRNA_S-ischiensis_contig8.19404.1|Name=mRNA_S-ischiensis_contig8.19404.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4838bp|location=Sequence derived from alignment at S-ischiensis_contig8:1212642..1217479+ (Schizocladia ischiensis KU_0333)
CCGGAACGGGAGCGGCGCATGGAGGCAGCTAGCCCACAGGGAGAGCAGTG
GCACAACGTTGGGGGCGATGAGCAGGAGGCGGCTGTGGTGGAAGAGGACG
GAGAAGAGTCCGACACGGCCGTCGATCCAGCACCTGCGTCTGCGAGTTTC
TTGAACGTGCAGCGGACCCAGGCTCCTGCCAAGCTGCGGGACTGGAGGCA
AGAAGCCTATGGCCCCATGATGACGAAGGTGGGTCTCTGCTCGAGAATGT
AATCGCCGAGGTGAATAACCGACGCGGATACTGTATTGGCGGCTCTCTCC
CTTTCTCCCCCCCCCCCTGCAACTTTCCATGCGTATGTCTCCGTCCCTAA
GATGCTTCGAACTACTGCTGCGAAGTACCATGTAGTCGTACGAGTACGAG
TTTTTGATGTTCAACAGTATCATAAATATTTCGACGTCTTCGTCAAGTTC
CAAGCATACATGCACATGCGTGTGCATGCAGTCATGGGTTGGAAGCCGTT
TTTGACGTGGGCCGTTGTGTGTATGGTCGACAACCCGCAGTTTCCCCTTG
CCCTCCGCCAAGAGCAGCTGCAGCAAAACATTCATACGCAACTCAGCAGT
TTATTCATCAAGCCTCACTCGGCTTACCAGGGGTTATCAGCTAGTGCATA
TGCAAATATAGATTGCCAACCTAGTACGGTAGGCTATGGAATTACTCGTG
TACTCGAGTATGCTCAAGTTTGCGCGCGTGCATACACACACACACACACA
GACAGAGAGAGGTGAGATAGTACTTGTAGGCCGCACAAGAGGAAAGATAC
GCAAACAGAAACCAAAGCCGCTTGCACATGTCTTTCACTATGAATACTGA
TTCTAGTGTGGGTCCGACGGTCCTCTCTGCCTGGACAGGAGCATGCATCA
TGGCAGCATGGCCTCCAAATTCAACACCTCACCTGCCCTTGACGAGATAG
GCCACGCCAGCCACCCTCTATAAAAACACCCTCTGGCTGCGCTGCGCCTT
GCATTCTGGCCCAGGCTGTGGCTGAAGATGACCCTGAGATGCTCCGCTGG
CTATGGCGCCACGAGTTGGTCACGGTTGACGCTCCAGACGCCTTGGGGAA
CACTGCTGCCCATCTCGCCGTCTTCCACGATTCCCCCAGGTGGAGGAAAG
CGCTTGCATCCACCGCATATTGCATTATGCAGTTGCACTGTACTGCAGAT
AGTATAAAAGTTGTTGCTTGAATGCTACCCTACACTACAGGCCCCAGCTC
TGTACGGCAGGCACACCATGCGCTAGAACGCAGAAGGGTCATCAGCGGCA
ACTGCGCCAGGGAATCCATCTCCCCGGGCCGCGAGTGGCCCCAGCTGTGA
ACCACTCAAAGGGAAACGTTCCCCCATGTGTGACCCTCGAGGCCTCTCGC
CCTGCTGTCCCCTTCTCAGAGTCCTCCGAGAACTTCACGCCCTGGGGCTG
GACCTCTCCTTGCCGTGCGACGCCCAGGTGAGCACACATGCAGACACCCG
AACCCTTGCTGAGGAGTTGAAAAAGTCGTGGTGCACTTGATCCCAGGTCA
AGCTACAGTGCAATTGTAGGCCCCTGTGCTACTGTACTTCGTGTAGTAGC
TCGCCTGTGTGCCGTCACAGCTATCGGAGGTCCGCACAGCTGGCCAGAGG
CCCCCTCGACCCATGGCGGGCCTCTGCTAGCTGCGGTACACTGATCCCGA
CGCCAACCCCCTGTAGTATAGAGTAGGTACTTCTATTAGCGGTGTGCTTG
TCATAGTCCCGAGACCATTGACCACGCGCCGCTGACGACGGGGCAATCTC
CCTCCCGCCCCTATAGCACTGTACAGTACTTGTGCGGTGGTGCAACTGTG
TACTGCCACAGCCCACAGAGGTCCTCGCGGCTGACAGAGGTCGTCCCGAC
CCGTGGAGGGCCTCTGCTACTTACGAAGTAGCTGTTGTACGCTGGTGCCG
TGCTAAACTCCACTACAGTAGGGAAGTGCTACAGTACTGTATTTTGAAGC
GTGCGTAGTTCAACTGTGAGCCATCATGCCGGACGGAGGCCCCACAGCTT
ACAGAGGTCGCCTCAACCCTTGGAGGCCCTCTGCTAGCTGTGGTACGCTG
ATCCCATGCTAAACTCCACTACAGTACCGTACTTTGAATTGTGTGTAGTT
CAACTGTGAGCCGTCACCCCGGATGGAGGTCCCCACAGCTGACAGAGGTC
GCCTCGACCCTTGGAGGGCCTCTGCTAGCTGTGGTACGAGTACGGTGATC
CCACGCCAGACCCCTCTAAGTCACTACTACTTCGAAGCGGTGCTGTGCTA
GTATTACTTCCAAATAGTTCAAATGTACACTGTTGAAGCTAACGGGGGTC
CTCACAAGCTAGCGGGTGTCGCCTCGACCCATGGATTGCCTCTGCTAGCT
GTGGTCTGCTCCAGTGATCCCACGGTGAACACCCAGTATGGAAGTGCTAC
AGTACTGTGTTTTTGAAGTACTTACAGTATAACAGGAACAGCACAGGGCG
AGGTGCAGGCCACGTCACTAAAGACCTCAACAGTGGCCCTTCCTTAGCTC
GCCAGGGGAAGTTTGTTTACAGTACAAGTAGTGCATAGTAGTTCCGAGCA
CGACCGCTACCAATGGAGGCCCTCACAGCTGACGGAGGTGGCCTCCACCC
ATGGAGGACAATTTGCTACTAAGTAGTAGCTGCGACACACTCATCCTGCA
TGGGACCGCGGTTGTTTTAGTGCCCCTACCGGCACCCACGTCCTCCGAGC
GTTCAACGTCCTTTCGAGCCATGCAGGAATGGCACTGTGACTTTGCGCGG
CGCCTAGCCCGGGGGCTGTCGAGCGTCTTCCTGACGGCCCATCCTGCCAT
GCCCCGTGCACCAGCCCACTCAGTCGGTACGTTGGACCTGCTACTGCTAC
TGCTACTACACTACTACTACTACTACTACTCGAGTACTACTACTACTACT
ACTACTAACCATACTACTATATGTACTCGTACTCACGTGGTGCTTGCCGT
AGTCCCGAGACCATTGACCCCGCGCCTCGTGCGAGACGGAGCAGGACCCC
TCCCTCCCCTGGCAGAGCCAGAGTGGGAGGGGGTGGCCACCCCCTCGCCA
GAGGCGGAGGGGTGGCCAAGTCCATACTACTACATGTACTCAAGCAGTAG
TACTACTACGAAGTACTACAACAGTACTACTGCTACTGCAACTACTACTT
GCACTACTAGAGTACTACACTACGCATCCCCACCACCCCCTTCCCCCCTT
CCCCGCCCTCCTTCTTGACCGTCTCGAGTCCTTGCTCCGGCTAGTGCTCC
CCCTCCCCCGCCCCGACCCCTCCATCCTCCTGCCCCCTCCCGCCCTTCCC
CCCCTTCCCCACCCGCTCCTCTTTCCGCTCCGCAGGGCTTAGGGTCGGCT
GCATTCCACTGCTCCCTGCTGGGTCGCGTGGACTGCCTTATGGCCCTCAT
GGAGCTAGGTTACGATGTGTCGGCCCCCTGCGACAGGCAAGCCAGCTGTG
CCCCGCTGCTTCGTGTGAGGGAGCAACGGTGCACAGATACTGTAGACGTG
CTGTGCTTCCAGAAGTACTCGAGTACTGGTACATTTTGTTGGAAGTGCAA
GTGCAGTATTGACGGGGAAAACACGGGGCTATATGTGGTGCGGGCCACGC
CACTCTAAAGGCCTCTCAACAGTGGTCCGTCCCTAGCTCGCCAGGGAAGG
GTTGCTGTGGGGAAGCAGGAATATGTGTGCTGCTTCAGAAGCTACTACCA
CTGCAGTGCTGCAGTCCCTTCCCCACACACAACCCTGGCGAGCTAAGGAA
GGGCCACTGTTGAGGTCTTTAGTTGTGTGGCCTGCACCGCGCCCTGTGTT
GTTCCTGGTAATGGGGTAAGTACTCGAGTAGGTAGACAAAGGAAATAGGA
GTTTCTCGCGTGGGCTCACAGCCGGGCAGGCGTGCAACGAGCGAATAGCT
GGAAGCCAGACGCCGAGCGGTAAGTGCCTGTCGCATCGTTCGAGGCGCGG
CTGGCCGCGCATGCACGGGGGCGCTCGTGCTGCAAGCAGGCTTGAAGCAG
CTGCACTTTGTCTACAGATACGATACCGGTGTGCGGTACATTTACACGCA
TACTAGTACGCATACATATATACTGTGCAAGCATACTACAGTAGTACGCA
TATATATACTGTACAAGTACGAGTACATACATTTATGTATGTGCCCGCTC
ATGGTTCTCTGACGCACATGTACTCTATACGGAGTAGAAGCGCGGGTTGC
GTACTCTGAAAGCTGCAGCGTCTGGCGGTTCTTCTTTGGCCATTGGACCC
CCTCCCTGAAACCGACACGGTCGGTCCGCAAGTCTTTTTTCTTCCCTTTT
TTGTTTCACTTCGTAGTGTAGTAGCCCTTCGACGACGGCAGCGCACAGAA
AAATCAGTTGTGGGAGATTCAGCGCGATGTCATCGTACCGAACAGCTCGC
TAACCCTTCTGCCCCAGGTGTGCACGAAACGATAGGGATTTAGTGTGTGT
ACTAGAGCACAGTACACCATCCCGGGGTCCAAGGGTTAAATAAATCATCA
CCATACTTCCGGAAGTACTTCGCAGTCTTAAAAAATAACATGGGGTCAAC
TCCAATGATTCCAATCACCTCTTCCTCTCGCCAAACGGCGGGCAGGTACG
GCCGGACGCCCGAGACAGTGGCGGCTCGCCATGACCAGGGGGCCTGCGCG
GACCTGGTCCGAACGGCCCTGGCCGCCCCGACCCTGCAGCGCGTGGGGCG
AGGATGCCTGGCCCGCAGGCGCGCCCGGGGGTTGAGAGAACGCCGCCGGC
TCGCCGGGCTCGCTGAGGCGGGGGTGGGGCAGGCGGGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1212642..1217479+

>mRNA_S-ischiensis_contig8.19404.1 ID=mRNA_S-ischiensis_contig8.19404.1|Name=mRNA_S-ischiensis_contig8.19404.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1374bp|location=Sequence derived from alignment at S-ischiensis_contig8:1212642..1217479+ (Schizocladia ischiensis KU_0333)
ATGGAGGCAGCTAGCCCACAGGGAGAGCAGTGGCACAACGTTGGGGGCGA
TGAGCAGGAGGCGGCTGTGGTGGAAGAGGACGGAGAAGAGTCCGACACGG
CCGTCGATCCAGCACCTGCGTCTGCGAGTTTCTTGAACGTGCAGCGGACC
CAGGCTCCTGCCAAGCTGCGGGACTGGAGGCAAGAAGCCTATGGCCCCAT
GATGACGAAGATGGAGGCAGCTAGCCCACAGGGAGAGCAGTGGCACAACG
TTGGGGGCGATGAGCAGGAGGCGGCTGTGGTGGAAGAGGACGGAGAAGAG
TCCGACACGGCCGTCGATCCAGCACCTGCGTCTGCGAGTTTCTTGAACGT
GCAGCGGACCCAGGCTCCTGCCAAGCTGCGGGACTGGAGGCAAGAAGCCT
ATGGCCCCATGATGACGAAGGCTGTGGCTGAAGATGACCCTGAGATGCTC
CGCTGGCTATGGCGCCACGAGTTGGTCACGGTTGACGCTCCAGACGCCTT
GGGGAACACTGCTGCCCATCTCGCCGTCTTCCACGATTCCCCCAGGCTGT
GGCTGAAGATGACCCTGAGATGCTCCGCTGGCTATGGCGCCACGAGTTGG
TCACGGTTGACGCTCCAGACGCCTTGGGGAACACTGCTGCCCATCTCGCC
GTCTTCCACGATTCCCCCAGAGTCCTCCGAGAACTTCACGCCCTGGGGCT
GGACCTCTCCTTGCCGTGCGACGCCCAGAGTCCTCCGAGAACTTCACGCC
CTGGGGCTGGACCTCTCCTTGCCGTGCGACGCCCAGGGCTTAGGGTCGGC
TGCATTCCACTGCTCCCTGCTGGGTCGCGTGGACTGCCTTATGGCCCTCA
TGGAGCTAGGTTACGATGTGTCGGCCCCCTGCGACAGGGCTTAGGGTCGG
CTGCATTCCACTGCTCCCTGCTGGGTCGCGTGGACTGCCTTATGGCCCTC
ATGGAGCTAGGTTACGATGTGTCGGCCCCCTGCGACAGGTACGGCCGGAC
GCCCGAGACAGTGGCGGCTCGCCATGACCAGGGGGCCTGCGCGGACCTGG
TCCGAACGGCCCTGGCCGCCCCGACCCTGCAGCGCGTGGGGCGAGGATGC
CTGGCCCGCAGGCGCGCCCGGGGGTTGAGAGAACGCCGCCGGCTCGCCGG
GCTCGCTGAGGCGGGGGTGGGGCAGGCGGGAGTACGGCCGGACGCCCGAG
ACAGTGGCGGCTCGCCATGACCAGGGGGCCTGCGCGGACCTGGTCCGAAC
GGCCCTGGCCGCCCCGACCCTGCAGCGCGTGGGGCGAGGATGCCTGGCCC
GCAGGCGCGCCCGGGGGTTGAGAGAACGCCGCCGGCTCGCCGGGCTCGCT
GAGGCGGGGGTGGGGCAGGCGGGA
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