mRNA_S-ischiensis_contig8.19400.1 (mRNA) Schizocladia ischiensis KU_0333
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI) HSP 1 Score: 212 bits (539), Expect = 1.520e-60 Identity = 108/160 (67.50%), Postives = 122/160 (76.25%), Query Frame = 1
Query: 10 TGASVEELRLALSELSDTRFGVGKMDDAAEAMEVILSCLLQESSGGDTGLQGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHASALREARERDRSRGFDAVLKAASHGDLVTCRNRECPLSRRREPLPSQRYILGEPPSVFTLGLVWNNWGTGLVA 489
T ASVE LR AL+ELS RFG GKMDDAAEAME IL CL++ SS ++ VFSMR+RE +VCPRC T SP P Y+A+VFYAH SALREARE+ FD L+ ASHGDLVTCRN C LSRR+E LPSQR+I G PPSVF+LGLVWNNWG GLVA
Sbjct: 1661 TSASVEALRTALAELSGARFGAGKMDDAAEAMETILGCLVKGSS--PAVIRQVFSMRIREALVCPRCGTSSPEKPATYEANVFYAHVSALREAREKTPGCPFDVALREASHGDLVTCRNAGCSLSRRKERLPSQRFITGVPPSVFSLGLVWNNWGPGLVA 1818
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE) HSP 1 Score: 209 bits (532), Expect = 1.340e-59 Identity = 106/158 (67.09%), Postives = 121/158 (76.58%), Query Frame = 1
Query: 16 ASVEELRLALSELSDTRFGVGKMDDAAEAMEVILSCLLQESSGGDTGLQGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHASALREARERDRSRGFDAVLKAASHGDLVTCRNRECPLSRRREPLPSQRYILGEPPSVFTLGLVWNNWGTGLVA 489
ASVE LR AL+ELS RFG GKMDDAAEAME IL CL++ SS ++ VFSMR+RE +VCPRC T SP P Y+A+VFYAH SALREARE+ FD L+ ASHGDL+TCRN C LSRR+E LPSQR+I G PPSVF+LGLVWNNWG GLVA
Sbjct: 2207 ASVEALRTALAELSGARFGAGKMDDAAEAMETILGCLVKGSS--PAVIRQVFSMRIREALVCPRCGTSSPEKPAAYEANVFYAHVSALREAREKTPGCPFDVALREASHGDLMTCRNAGCSLSRRKERLPSQRFITGVPPSVFSLGLVWNNWGPGLVA 2362
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Match: A0A4D9DCT5_9STRA (USP domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCT5_9STRA) HSP 1 Score: 103 bits (256), Expect = 1.780e-22 Identity = 62/154 (40.26%), Postives = 86/154 (55.84%), Query Frame = 1
Query: 58 DTRFGVGKMDDAAEAMEVILSCLLQESSGGDTG---LQGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHA-SALREARERDRSR------------GFDAVLKAASHGDLVTCRNRE-CPLSRRREPLPSQRYILGEPPSVFTLGLVWNN 468
D +F G MDDA EA E IL L +GG+ G ++ F + +RE + CP C + SP+ R+YD +VFY S + EA R S+ F ++L+ A GDL CRN E CP++RR E RY++ PPSVF+LGLVW++
Sbjct: 1943 DGKFRAGHMDDAVEAFEEILRLL---GAGGEEGRLVVRDSFCLHLRELMFCPTCGSSSPSPARDYDTNVFYVPVRSLIEEAARRASSKLNSVSISESVGLDFGSLLQNAGSGDLYRCRNTEACPIARRGEKRAGHRYLVRGPPSVFSLGLVWDS 2093
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Match: A0A7S2D7M8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D7M8_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 9.870e-13 Identity = 60/180 (33.33%), Postives = 89/180 (49.44%), Query Frame = 1
Query: 10 TGASVEELR--------LALSELSDTRFGV-GKMDDAAEAMEVILSCLLQESSGGDTGLQGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHASALREARER-------------DRSRGFDAVLKAASHG--DLVTCRNRECPLSRRREPLPSQRYILGEPPSVFTLGLVWNNWGT 477
TG V EL +AL+EL T G M DA +AM +I L + GDT L +F+M++R+ CPRC +P A R+ D F + +L++ ER D + FD+VL+ A+ D+VTC++ + S PLP R + PP+VFTL L+ ++ T
Sbjct: 371 TGVEVVELEPLREALKNVALTELHGTELSTAGDMADAIDAMNMIFHSLRR--CMGDTFLDKLFTMKLRDVYSCPRCKE-NPTASRDQDVYTFKVNPLSLQQEHERQSRLAQKKSGHTADTTAQFDSVLRIAAQVFCDVVTCKHTK---SCEGNPLPCVRTLRSSPPAVFTLELIQDSLRT 544
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Match: E1Z460_CHLVA (USP domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z460_CHLVA) HSP 1 Score: 58.5 bits (140), Expect = 5.990e-7 Identity = 43/147 (29.25%), Postives = 68/147 (46.26%), Query Frame = 1
Query: 31 LRLALSELSDTRFGVGKMDDAAEAMEVILSCLLQESSGG-DTGLQGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHASALREARERDRSRGFDAVLKAASHGDLVTCRNRECPLSRRREPLPSQRYILGEPPSVFTLGLVWNN 468
LR A++ L F +G+M DA E + V+ + + + G + F +R+ E V C C + +A Y F + A+ALR + GF A L++ +C + L P ++ +LG PP VFTL LVW +
Sbjct: 1653 LREAINALPGQEFKIGEMSDAGELLLVLYEHMREAAPGAAGASVDVAFGLRVGEGVRCGACGKETQSA--HYTQYFFNSFAAALRGSLRTGSDPGFGARLRSIEDEHQKSC---DTDLGGCGTLHPVRQELLGGPPRVFTLQLVWES 1794
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Match: A0A7S3UT00_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UT00_HETAK) HSP 1 Score: 55.5 bits (132), Expect = 6.910e-7 Identity = 34/93 (36.56%), Postives = 47/93 (50.54%), Query Frame = 1
Query: 19 SVEELRLALSELSDTR---FGVGKMDDAAEAMEVILSCLLQESSGGDTGLQGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHASALREA 288
SV+ LR AL S FG G+MDDA EA+EV+L L S ++ F M + E + C +C +P +P Y + FY L+EA
Sbjct: 24 SVDALRAALQRSSRAAARLFGEGQMDDAVEALEVVLGSL---PSDLQDIVKDTFCMNIEEVLECEKCGASTPDSPHSYGTNTFYVPIKLLQEA 113
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Match: A0A7S4I9T0_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I9T0_9EUKA) HSP 1 Score: 53.9 bits (128), Expect = 1.910e-5 Identity = 42/155 (27.10%), Postives = 71/155 (45.81%), Query Frame = 1
Query: 31 LRLALSEL--SDTRFGVGKMDDAAEAMEVILSCL---LQESSGGDTGL-QGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHASALREARERDRSRGFDAVLKAASHGDLVTCRNRECPLSRRREPLPS-----QRYILGEPPSVFTLGLVW 462
LR L+ + RF +G +DDAAEA+E +LSCL +E G ++ + +F + V+C C S P + V Y +A LR ++ + F+ ++ + + CP + P P+ ++++L P V GLVW
Sbjct: 84 LRQTLNNVFREQNRFQMGDIDDAAEALEAVLSCLHDNTREEDGEESCVVHNIFGINTLSLVICSTCKETSEPTPNLHF--VEYTYADDLRAQHKKFPNYSFEKLIH------ITNQEYKGCPKDDKHNPCPNVKNQVEKHLLNIP-GVIAFGLVW 229 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19400.1 >prot_S-ischiensis_contig8.19400.1 ID=prot_S-ischiensis_contig8.19400.1|Name=mRNA_S-ischiensis_contig8.19400.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=163bp GGGTGASVEELRLALSELSDTRFGVGKMDDAAEAMEVILSCLLQESSGGDback to top mRNA from alignment at S-ischiensis_contig8:1191614..1192757+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19400.1 ID=mRNA_S-ischiensis_contig8.19400.1|Name=mRNA_S-ischiensis_contig8.19400.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1144bp|location=Sequence derived from alignment at S-ischiensis_contig8:1191614..1192757+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:1191614..1192757+ >mRNA_S-ischiensis_contig8.19400.1 ID=mRNA_S-ischiensis_contig8.19400.1|Name=mRNA_S-ischiensis_contig8.19400.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=978bp|location=Sequence derived from alignment at S-ischiensis_contig8:1191614..1192757+ (Schizocladia ischiensis KU_0333)back to top |