mRNA_S-ischiensis_contig8.19400.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19400.1
Unique NamemRNA_S-ischiensis_contig8.19400.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 1.520e-60
Identity = 108/160 (67.50%), Postives = 122/160 (76.25%), Query Frame = 1
Query:   10 TGASVEELRLALSELSDTRFGVGKMDDAAEAMEVILSCLLQESSGGDTGLQGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHASALREARERDRSRGFDAVLKAASHGDLVTCRNRECPLSRRREPLPSQRYILGEPPSVFTLGLVWNNWGTGLVA 489
            T ASVE LR AL+ELS  RFG GKMDDAAEAME IL CL++ SS     ++ VFSMR+RE +VCPRC T SP  P  Y+A+VFYAH SALREARE+     FD  L+ ASHGDLVTCRN  C LSRR+E LPSQR+I G PPSVF+LGLVWNNWG GLVA
Sbjct: 1661 TSASVEALRTALAELSGARFGAGKMDDAAEAMETILGCLVKGSS--PAVIRQVFSMRIREALVCPRCGTSSPEKPATYEANVFYAHVSALREAREKTPGCPFDVALREASHGDLVTCRNAGCSLSRRKERLPSQRFITGVPPSVFSLGLVWNNWGPGLVA 1818          
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.340e-59
Identity = 106/158 (67.09%), Postives = 121/158 (76.58%), Query Frame = 1
Query:   16 ASVEELRLALSELSDTRFGVGKMDDAAEAMEVILSCLLQESSGGDTGLQGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHASALREARERDRSRGFDAVLKAASHGDLVTCRNRECPLSRRREPLPSQRYILGEPPSVFTLGLVWNNWGTGLVA 489
            ASVE LR AL+ELS  RFG GKMDDAAEAME IL CL++ SS     ++ VFSMR+RE +VCPRC T SP  P  Y+A+VFYAH SALREARE+     FD  L+ ASHGDL+TCRN  C LSRR+E LPSQR+I G PPSVF+LGLVWNNWG GLVA
Sbjct: 2207 ASVEALRTALAELSGARFGAGKMDDAAEAMETILGCLVKGSS--PAVIRQVFSMRIREALVCPRCGTSSPEKPAAYEANVFYAHVSALREAREKTPGCPFDVALREASHGDLMTCRNAGCSLSRRKERLPSQRFITGVPPSVFSLGLVWNNWGPGLVA 2362          
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Match: A0A4D9DCT5_9STRA (USP domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCT5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.780e-22
Identity = 62/154 (40.26%), Postives = 86/154 (55.84%), Query Frame = 1
Query:   58 DTRFGVGKMDDAAEAMEVILSCLLQESSGGDTG---LQGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHA-SALREARERDRSR------------GFDAVLKAASHGDLVTCRNRE-CPLSRRREPLPSQRYILGEPPSVFTLGLVWNN 468
            D +F  G MDDA EA E IL  L    +GG+ G   ++  F + +RE + CP C + SP+  R+YD +VFY    S + EA  R  S+             F ++L+ A  GDL  CRN E CP++RR E     RY++  PPSVF+LGLVW++
Sbjct: 1943 DGKFRAGHMDDAVEAFEEILRLL---GAGGEEGRLVVRDSFCLHLRELMFCPTCGSSSPSPARDYDTNVFYVPVRSLIEEAARRASSKLNSVSISESVGLDFGSLLQNAGSGDLYRCRNTEACPIARRGEKRAGHRYLVRGPPSVFSLGLVWDS 2093          
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Match: A0A7S2D7M8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D7M8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 9.870e-13
Identity = 60/180 (33.33%), Postives = 89/180 (49.44%), Query Frame = 1
Query:   10 TGASVEELR--------LALSELSDTRFGV-GKMDDAAEAMEVILSCLLQESSGGDTGLQGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHASALREARER-------------DRSRGFDAVLKAASHG--DLVTCRNRECPLSRRREPLPSQRYILGEPPSVFTLGLVWNNWGT 477
            TG  V EL         +AL+EL  T     G M DA +AM +I   L +    GDT L  +F+M++R+   CPRC   +P A R+ D   F  +  +L++  ER             D +  FD+VL+ A+    D+VTC++ +   S    PLP  R +   PP+VFTL L+ ++  T
Sbjct:  371 TGVEVVELEPLREALKNVALTELHGTELSTAGDMADAIDAMNMIFHSLRR--CMGDTFLDKLFTMKLRDVYSCPRCKE-NPTASRDQDVYTFKVNPLSLQQEHERQSRLAQKKSGHTADTTAQFDSVLRIAAQVFCDVVTCKHTK---SCEGNPLPCVRTLRSSPPAVFTLELIQDSLRT 544          
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Match: E1Z460_CHLVA (USP domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z460_CHLVA)

HSP 1 Score: 58.5 bits (140), Expect = 5.990e-7
Identity = 43/147 (29.25%), Postives = 68/147 (46.26%), Query Frame = 1
Query:   31 LRLALSELSDTRFGVGKMDDAAEAMEVILSCLLQESSGG-DTGLQGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHASALREARERDRSRGFDAVLKAASHGDLVTCRNRECPLSRRREPLPSQRYILGEPPSVFTLGLVWNN 468
            LR A++ L    F +G+M DA E + V+   + + + G     +   F +R+ E V C  C   + +A   Y    F + A+ALR +       GF A L++       +C   +  L       P ++ +LG PP VFTL LVW +
Sbjct: 1653 LREAINALPGQEFKIGEMSDAGELLLVLYEHMREAAPGAAGASVDVAFGLRVGEGVRCGACGKETQSA--HYTQYFFNSFAAALRGSLRTGSDPGFGARLRSIEDEHQKSC---DTDLGGCGTLHPVRQELLGGPPRVFTLQLVWES 1794          
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Match: A0A7S3UT00_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UT00_HETAK)

HSP 1 Score: 55.5 bits (132), Expect = 6.910e-7
Identity = 34/93 (36.56%), Postives = 47/93 (50.54%), Query Frame = 1
Query:   19 SVEELRLALSELSDTR---FGVGKMDDAAEAMEVILSCLLQESSGGDTGLQGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHASALREA 288
            SV+ LR AL   S      FG G+MDDA EA+EV+L  L    S     ++  F M + E + C +C   +P +P  Y  + FY     L+EA
Sbjct:   24 SVDALRAALQRSSRAAARLFGEGQMDDAVEALEVVLGSL---PSDLQDIVKDTFCMNIEEVLECEKCGASTPDSPHSYGTNTFYVPIKLLQEA 113          
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Match: A0A7S4I9T0_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I9T0_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 1.910e-5
Identity = 42/155 (27.10%), Postives = 71/155 (45.81%), Query Frame = 1
Query:   31 LRLALSEL--SDTRFGVGKMDDAAEAMEVILSCL---LQESSGGDTGL-QGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHASALREARERDRSRGFDAVLKAASHGDLVTCRNRECPLSRRREPLPS-----QRYILGEPPSVFTLGLVW 462
            LR  L+ +     RF +G +DDAAEA+E +LSCL    +E  G ++ +   +F +     V+C  C   S   P  +   V Y +A  LR   ++  +  F+ ++       +     + CP   +  P P+     ++++L  P  V   GLVW
Sbjct:   84 LRQTLNNVFREQNRFQMGDIDDAAEALEAVLSCLHDNTREEDGEESCVVHNIFGINTLSLVICSTCKETSEPTPNLHF--VEYTYADDLRAQHKKFPNYSFEKLIH------ITNQEYKGCPKDDKHNPCPNVKNQVEKHLLNIP-GVIAFGLVW 229          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LEW9_ECTSI1.520e-6067.50USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBH4_9PHAE1.340e-5967.09USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A4D9DCT5_9STRA1.780e-2240.26USP domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A7S2D7M8_9STRA9.870e-1333.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
E1Z460_CHLVA5.990e-729.25USP domain-containing protein n=1 Tax=Chlorella va... [more]
A0A7S3UT00_HETAK6.910e-736.56Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4I9T0_9EUKA1.910e-527.10Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1191614..1192757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.8
Seed ortholog evalue2.3e-52
Seed eggNOG ortholog2880.D8LEW9
EggNOG free text desc.protein deubiquitination
EggNOG OGsKOG1887@1,KOG1887@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size489
Cds size489
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19400.1prot_S-ischiensis_contig8.19400.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1191614..1192757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817278.763777-CDS-S-ischiensis_contig8:1191613..11917311622817278.763777-CDS-S-ischiensis_contig8:1191613..1191731Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1191614..1191731 +
1695740990.4402673-CDS-S-ischiensis_contig8:1191613..11917311695740990.4402673-CDS-S-ischiensis_contig8:1191613..1191731Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1191614..1191731 +
1622817278.7748268-CDS-S-ischiensis_contig8:1191961..11921731622817278.7748268-CDS-S-ischiensis_contig8:1191961..1192173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1191962..1192173 +
1695740990.4583316-CDS-S-ischiensis_contig8:1191961..11921731695740990.4583316-CDS-S-ischiensis_contig8:1191961..1192173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1191962..1192173 +
1622817278.7864804-CDS-S-ischiensis_contig8:1192598..11927571622817278.7864804-CDS-S-ischiensis_contig8:1192598..1192757Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1192599..1192757 +
1695740990.4724581-CDS-S-ischiensis_contig8:1192598..11927571695740990.4724581-CDS-S-ischiensis_contig8:1192598..1192757Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1192599..1192757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19400.1

>prot_S-ischiensis_contig8.19400.1 ID=prot_S-ischiensis_contig8.19400.1|Name=mRNA_S-ischiensis_contig8.19400.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=163bp
GGGTGASVEELRLALSELSDTRFGVGKMDDAAEAMEVILSCLLQESSGGD
TGLQGVFSMRMREEVVCPRCHTPSPAAPREYDADVFYAHASALREARERD
RSRGFDAVLKAASHGDLVTCRNRECPLSRRREPLPSQRYILGEPPSVFTL
GLVWNNWGTGLVA
back to top

mRNA from alignment at S-ischiensis_contig8:1191614..1192757+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19400.1 ID=mRNA_S-ischiensis_contig8.19400.1|Name=mRNA_S-ischiensis_contig8.19400.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1144bp|location=Sequence derived from alignment at S-ischiensis_contig8:1191614..1192757+ (Schizocladia ischiensis KU_0333)
GGGGGGGGGACGGGCGCGTCGGTGGAGGAGCTGCGCTTGGCGCTGAGCGA GCTGTCGGACACGCGGTTTGGCGTGGGGAAGATGGACGACGCGGCGGAGG CCATGGAGGTCATCTTGAGTGAGTCTGTCGGCTTTGCACTCGTCTCCCTG CTCCGCCCCGGCCGACGCATGTGGTCAATGCTCTCAGGACTGCGCAAGCT AGCGTGAGCAGTACAGTACAGTACAGTACGAGTACATATGTACGAAGTAC TCGAGTAGTCATGTATCATATACCGGAACTGGTCAGCGCGACCCCGATCG CACGCGGCTCACGCCCCCCCTTCCGCCGCTGCCCCCTGAAAACTCAAGGC TGCCTGCTCCAAGAAAGCAGCGGCGGAGACACGGGTCTCCAGGGCGTGTT CAGCATGCGCATGCGGGAAGAGGTGGTGTGCCCCCGCTGCCACACGCCCT CGCCGGCGGCCCCACGCGAGTACGACGCCGACGTCTTCTACGCGCACGCC TCCGCCCTGCGGGAGGCCCGGGAGCGGGACCGCTCGCGCGGGTTCGACGC CGTGCTCAAGGTGGGTTAGTGCTTCGAAGTAGCTGCTGTGGACGCTAAGT AAGGTGCAACACAAGAACAGTTGTTTTATCAGGAACGACACAAGGCGAGG TGCAGGCCGCGTGACTAGAGTTGAAGAGTTGTATTTGCGTTTTGATCGCA CATCACGCGGCCGAAATGTTGGCAGGTGTACCTGCAGTAGTCCTGGAGGG GTTTTGTGCGTGCGTGCTTGCCCGTTTTTTGTTGGTTGTTTGTGGCTGCT TGCCCGCGAGCACTCGTGTACACCGTACTTGTGTACTGTGTGTGTCCTGT GTTCTCCCTCCCCCCCAATCCCCGTCCTCGTCCCCTGTACACGCGCATGC GCACACACACACACACACACACACACACAGAGACACAGACAGACACACAC ACGACACGCCTTCCCTCCTTCCCTCCTTCCCCCAGGCGGCCAGCCACGGC GACCTGGTCACCTGCCGCAACCGTGAGTGCCCCCTCTCCCGGCGCCGCGA GCCCCTCCCCTCCCAGCGGTACATCCTCGGGGAGCCCCCCAGCGTCTTCA CGCTCGGCCTCGTCTGGAACAACTGGGGCACGGGCCTGGTCGCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:1191614..1192757+

>mRNA_S-ischiensis_contig8.19400.1 ID=mRNA_S-ischiensis_contig8.19400.1|Name=mRNA_S-ischiensis_contig8.19400.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=978bp|location=Sequence derived from alignment at S-ischiensis_contig8:1191614..1192757+ (Schizocladia ischiensis KU_0333)
GGGGGGGGGACGGGCGCGTCGGTGGAGGAGCTGCGCTTGGCGCTGAGCGA
GCTGTCGGACACGCGGTTTGGCGTGGGGAAGATGGACGACGCGGCGGAGG
CCATGGAGGTCATCTTGAGGGGGGGGGACGGGCGCGTCGGTGGAGGAGCT
GCGCTTGGCGCTGAGCGAGCTGTCGGACACGCGGTTTGGCGTGGGGAAGA
TGGACGACGCGGCGGAGGCCATGGAGGTCATCTTGAGCTGCCTGCTCCAA
GAAAGCAGCGGCGGAGACACGGGTCTCCAGGGCGTGTTCAGCATGCGCAT
GCGGGAAGAGGTGGTGTGCCCCCGCTGCCACACGCCCTCGCCGGCGGCCC
CACGCGAGTACGACGCCGACGTCTTCTACGCGCACGCCTCCGCCCTGCGG
GAGGCCCGGGAGCGGGACCGCTCGCGCGGGTTCGACGCCGTGCTCAAGGC
TGCCTGCTCCAAGAAAGCAGCGGCGGAGACACGGGTCTCCAGGGCGTGTT
CAGCATGCGCATGCGGGAAGAGGTGGTGTGCCCCCGCTGCCACACGCCCT
CGCCGGCGGCCCCACGCGAGTACGACGCCGACGTCTTCTACGCGCACGCC
TCCGCCCTGCGGGAGGCCCGGGAGCGGGACCGCTCGCGCGGGTTCGACGC
CGTGCTCAAGGCGGCCAGCCACGGCGACCTGGTCACCTGCCGCAACCGTG
AGTGCCCCCTCTCCCGGCGCCGCGAGCCCCTCCCCTCCCAGCGGTACATC
CTCGGGGAGCCCCCCAGCGTCTTCACGCTCGGCCTCGTCTGGAACAACTG
GGGCACGGGCCTGGTCGCCGCGGCCAGCCACGGCGACCTGGTCACCTGCC
GCAACCGTGAGTGCCCCCTCTCCCGGCGCCGCGAGCCCCTCCCCTCCCAG
CGGTACATCCTCGGGGAGCCCCCCAGCGTCTTCACGCTCGGCCTCGTCTG
GAACAACTGGGGCACGGGCCTGGTCGCC
back to top