mRNA_S-ischiensis_contig8.19396.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19396.1
Unique NamemRNA_S-ischiensis_contig8.19396.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19396.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.980e-13
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:   34 AEELAR-READARVTSLQTSILQLQQEQIETCLSFRVFAAGQLHVRYRMLRGFYAQLRCRVARRPERAERLCG 249
            AE++A+ RE + R  SL T+I   QQEQIETCL++R+FA GQLH RYR LR F+AQL  RV  R  +A  LCG
Sbjct:  788 AEDMAKQREFEERCQSLATAISLTQQEQIETCLTYRLFAVGQLHQRYRRLRLFFAQLGSRVGARESQATLLCG 860
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BLAST of mRNA_S-ischiensis_contig8.19396.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.990e-13
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:   34 AEELAR-READARVTSLQTSILQLQQEQIETCLSFRVFAAGQLHVRYRMLRGFYAQLRCRVARRPERAERLCG 249
            AE++A+ RE + R  SL T+I   QQEQIETCL++R+FA GQLH RYR LR F+AQL  RV  R  +A  LCG
Sbjct:  793 AEDMAKQREFEERCQSLATAISLTQQEQIETCLTYRLFAVGQLHQRYRRLRLFFAQLGSRVGARESQATLLCG 865
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEW9_ECTSI2.980e-1357.53USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBH4_9PHAE2.990e-1357.53USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1186440..1186689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue2.3e-11
Seed eggNOG ortholog2880.D8LEW9
EggNOG free text desc.protein deubiquitination
EggNOG OGsKOG1887@1,KOG1887@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size250
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817278.731319-CDS-S-ischiensis_contig8:1186439..11866881622817278.731319-CDS-S-ischiensis_contig8:1186439..1186688Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1186440..1186688 +
1695740990.4214613-CDS-S-ischiensis_contig8:1186439..11866881695740990.4214613-CDS-S-ischiensis_contig8:1186439..1186688Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1186440..1186688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19396.1prot_S-ischiensis_contig8.19396.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1186440..1186688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19396.1

>prot_S-ischiensis_contig8.19396.1 ID=prot_S-ischiensis_contig8.19396.1|Name=mRNA_S-ischiensis_contig8.19396.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=83bp
AAAVRGPGGGAAEELARREADARVTSLQTSILQLQQEQIETCLSFRVFAA
GQLHVRYRMLRGFYAQLRCRVARRPERAERLCG
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mRNA from alignment at S-ischiensis_contig8:1186440..1186689+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19396.1 ID=mRNA_S-ischiensis_contig8.19396.1|Name=mRNA_S-ischiensis_contig8.19396.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=250bp|location=Sequence derived from alignment at S-ischiensis_contig8:1186440..1186689+ (Schizocladia ischiensis KU_0333)
GCGGCGGCGGTCCGCGGGCCCGGGGGGGGTGCGGCGGAGGAGCTGGCGCG
GCGGGAGGCGGACGCTAGGGTGACGTCGCTGCAGACGAGCATCCTGCAGC
TGCAGCAGGAGCAGATCGAGACGTGCCTTAGCTTCCGTGTGTTTGCGGCG
GGGCAGCTGCACGTGCGGTACCGCATGTTGAGAGGGTTCTACGCACAGCT
GCGGTGCCGGGTGGCGCGGCGGCCGGAGCGGGCGGAGCGGCTCTGCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1186440..1186689+

>mRNA_S-ischiensis_contig8.19396.1 ID=mRNA_S-ischiensis_contig8.19396.1|Name=mRNA_S-ischiensis_contig8.19396.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=498bp|location=Sequence derived from alignment at S-ischiensis_contig8:1186440..1186689+ (Schizocladia ischiensis KU_0333)
GCGGCGGCGGTCCGCGGGCCCGGGGGGGGTGCGGCGGAGGAGCTGGCGCG
GCGGGAGGCGGACGCTAGGGTGACGTCGCTGCAGACGAGCATCCTGCAGC
TGCAGCAGGAGCAGATCGAGACGTGCCTTAGCTTCCGTGTGTTTGCGGCG
GGGCAGCTGCACGTGCGGTACCGCATGTTGAGAGGGTTCTACGCACAGCT
GCGGTGCCGGGTGGCGCGGCGGCCGGAGCGGGCGGAGCGGCTCTGCGGGG
CGGCGGCGGTCCGCGGGCCCGGGGGGGGTGCGGCGGAGGAGCTGGCGCGG
CGGGAGGCGGACGCTAGGGTGACGTCGCTGCAGACGAGCATCCTGCAGCT
GCAGCAGGAGCAGATCGAGACGTGCCTTAGCTTCCGTGTGTTTGCGGCGG
GGCAGCTGCACGTGCGGTACCGCATGTTGAGAGGGTTCTACGCACAGCTG
CGGTGCCGGGTGGCGCGGCGGCCGGAGCGGGCGGAGCGGCTCTGCGGG
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