mRNA_S-ischiensis_contig8.19395.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19395.1
Unique NamemRNA_S-ischiensis_contig8.19395.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1182989..1186356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.5
Seed ortholog evalue2.2e-54
Seed eggNOG ortholog2880.D8LEW9
EggNOG free text desc.protein deubiquitination
EggNOG OGsKOG1887@1,KOG1887@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size983
Cds size981
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19395.1prot_S-ischiensis_contig8.19395.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1182989..1186355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817278.666387-CDS-S-ischiensis_contig8:1182988..11836841622817278.666387-CDS-S-ischiensis_contig8:1182988..1183684Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1182989..1183684 +
1695740990.3749292-CDS-S-ischiensis_contig8:1182988..11836841695740990.3749292-CDS-S-ischiensis_contig8:1182988..1183684Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1182989..1183684 +
1622817278.6800761-CDS-S-ischiensis_contig8:1185165..11853091622817278.6800761-CDS-S-ischiensis_contig8:1185165..1185309Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1185166..1185309 +
1695740990.3915312-CDS-S-ischiensis_contig8:1185165..11853091695740990.3915312-CDS-S-ischiensis_contig8:1185165..1185309Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1185166..1185309 +
1622817278.6922112-CDS-S-ischiensis_contig8:1186214..11863551622817278.6922112-CDS-S-ischiensis_contig8:1186214..1186355Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1186215..1186355 +
1695740990.4051797-CDS-S-ischiensis_contig8:1186214..11863551695740990.4051797-CDS-S-ischiensis_contig8:1186214..1186355Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1186215..1186355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19395.1

>prot_S-ischiensis_contig8.19395.1 ID=prot_S-ischiensis_contig8.19395.1|Name=mRNA_S-ischiensis_contig8.19395.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=327bp
HIAEGRGDSVAIDWDPKFVTRMAEAESMIGDWLKHLTGFLSCLARLSTSA
FLSTPPGPGAAKPSSDWDELRELTDRLWTSYQDTAERMLKVTLEMRREQL
QESPMPISLCFASTNRDSVSRLMEQKRRAVAALHEAVAAAVRPPEAKRLL
RRAEVAWRKFSAPLLGEGFQELDQAAGRALRARLDIFTDSSYMSAQSSDV
VQHEQQADHALRNAIQDWENQLDLFKADCESKATEHLSPACYPQGVAHAA
ALERWAKTFKEEWDESEGAQSLHAHIRQQQVQKKQQFLTYQKQKLKHARE
KVAELGKIRKKERREAIELAEVAAAAA
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mRNA from alignment at S-ischiensis_contig8:1182989..1186356+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19395.1 ID=mRNA_S-ischiensis_contig8.19395.1|Name=mRNA_S-ischiensis_contig8.19395.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3368bp|location=Sequence derived from alignment at S-ischiensis_contig8:1182989..1186356+ (Schizocladia ischiensis KU_0333)
CACATCGCAGAGGGGCGGGGGGATTCGGTGGCCATCGACTGGGACCCCAA
GTTCGTCACCCGCATGGCCGAGGCGGAGTCCATGATCGGGGACTGGCTCA
AGCACCTGACGGGCTTCCTGTCGTGCCTGGCGCGGCTCTCGACCTCGGCC
TTCCTCTCCACGCCCCCGGGGCCGGGGGCGGCTAAGCCCTCGTCCGACTG
GGACGAGCTGCGTGAGCTGACGGACCGGCTCTGGACCTCCTACCAGGACA
CGGCGGAGCGGATGCTCAAGGTGACGCTGGAGATGCGCCGGGAGCAGCTG
CAGGAGAGCCCCATGCCCATCTCGCTGTGCTTTGCCAGCACCAACCGGGA
CTCCGTGTCGCGGCTCATGGAGCAGAAGCGCCGCGCGGTGGCGGCACTCC
ACGAGGCGGTGGCGGCGGCGGTGCGGCCGCCCGAGGCGAAGCGGCTGCTG
CGGCGGGCGGAGGTGGCCTGGCGCAAGTTCTCGGCGCCCTTGCTGGGGGA
GGGTTTCCAGGAGCTGGATCAGGCGGCGGGGCGGGCGCTGCGCGCGAGGC
TGGACATCTTCACGGACAGCAGCTACATGAGCGCACAGTCCAGCGACGTG
GTGCAGCACGAGCAGCAGGCGGACCACGCGCTGAGGAACGCCATCCAGGA
CTGGGAGAACCAGCTGGACTTGTTCAAGGCGGACTGCGAGAGCAAGGTGC
GCGCGCGCGTGTGTGTGGGGGGGCACATGTGTGTGTGTATATGTACTCAA
AATATGTACTCACTTGGTGCTTGCCGTAGTCCCGAGACCATTGACCACGC
GCCGTGGTCGAGATGGAGCAGTGTGTGTGTGTGTGTGTGCTCGTTTTGTG
CATGTGTGCGCGCGTGTGTGTGTGTAGGCGCTCGGGTGCTCCTTGTTGTG
GGACTGGGGTTTTGGCGCGGTTCTCTACATCAGAAGGGCTAAACACTCAA
AGGCATGTGCTTTCGATGGCCAAGCCAGGCCTTCCAAGCGCGTGATTGGG
GGTTGGGGGGTTGGATCGGCAAGCATAGTGCAGTAGAGCTGGGGAGAGGG
AGCTGCCGCACATGGGGTTGGGTATGTGAAACCTTATGCAAAACGCCTTA
CAAGGTATGGTACTGTTTACCTACTGTAGTACTTTTTCCCGGGTGGAGAG
GGTCGTCACTGAAGTGCCCCCCTTCATTCACCATGTACGTGGCAGCTTGT
TCAAGGTCGAGTATGCGTGGTTCGATGTACGATGTGTGTGTGTGTGTGTG
CGCGTGTGTGCACTCGTGTCGGGCAGGGAGCTACCCCCGTCCTATGCAAG
CCGTTGCAGTACAGGATGTGCTACTCTTTGAGCTTTGGTGTGAATAGGGG
ATATATCGCTAGTACCTGCTCTGTTTCGTCCGAGGCGCGTGGTCAGTGGT
CTCAGGACTACGGCAAGCACCACGCGAGTACATAAATATATACTGTACGT
GTACTGGTTTTGGAGATGGGTGTGATGTGTACCTATAGTATGCCTGCCCA
AGGAGTTGAGAACCCGGTATGCTCCGTCCCGGCGAAGTAGGGATGTGAGG
CCAATGGCCGAAAGGCTACCCTGCGGGGATTGTTGCTGGCCGGCAGTCCA
GCAAGTAGTATACTGGGTCGACGGTCGGCGGCATGCCCAGGACGGGGTGA
CCCCTGTCTGATGTGAGTACACACACACACACAGTGCTCTTGTTGCAGAG
GACTGCAGTTTGACACACATTACGTCACGCCCCGAACGGTTGTAGAGACT
GCTGCTCTTATGAGACGAGGGGTTGTGTGTGCTATGTGGCGCGTTCGGTG
CTGCGCTTTTGAAGCTGTCCACGCCCGCAACCAGGCTTTCTTTTTTTACC
AGTGTACTCGTACTCGAGTACCTGTAGTATGTGCTCGAGTGTTTCTACAT
CATACTGAGCTCACACTTGCACTCTTTCTTGACAGTCAGCTCTCTTTCTT
TGACTCTGCAGGCAAGTCTCACCCACCCACCCCCCACCCGCACCGCGGCG
GCGGCGGCCGCCGCCGCCGCGCCAGTGTCGCCGGTGATAAGTTAACATGA
GCCCTTCCCCGCACTGACGCACTGTGCGCACGCTTGCCGCCACCTCTGCC
GCTGGCGATAACGTAACGTGACTATTGATGATCGTGCGATAGCGTAACGT
GACAACGTAATGTGATCATACGCACAGGCCACGGAGCATCTGTCGCCGGC
GTGCTACCCGCAGGGCGTGGCACACGCGGCGGCCCTGGAGCGGTGGGCCA
AGACCTTCAAGGAGGAGTGGGACGAGAGCGAGGGCGCTCAGTCCCTGCAC
GCGCACATCCGCCAGCAGCAGGTAAGTTCCTGTACTGTACAGACGGCGCT
GACAGGGTTGTTGTTGTTGTGTTTAACCGTTTTACCCCTGGGGTCCGTAT
AATCATAGGGTTTTAGTGTAGTCCAATTTAGCAGGGGTAAAAGGGTTAAC
TCTTCCGGAAGGAGGACAAGGAGAGGAGGAGCACGGTGCACTGCTCCCGT
ACTACAGACAGTACTGGACGGTCCCTGTACTCGTACAGCATGACCGGGGT
AGTAGCGGCATAGAGGGCAAGGTGCGGGCCTCGCCACTAAGACCTCAACG
GTGGCCCTTCCTTAGCTTGCCAGGGAGGGCGCGTGGGAGGGAGGGGAGGG
GGAGGAGGAGGAAGAGGGAGGGGAGGGGAGGGGGAGAGGGGAGGCGGGAG
TGCAGTTTATTTTAGTTCAGTGACATACAAGTGATACTTCGAAGTACGTA
TATATACCGTCAGCCACTACAGTAGGGCTAACGCGACAGTGTACTTCCAA
GCAGGAAGTGTGAGGGAGTTTGGTGAGGGTTTTACGAGTACAGTACTCAA
GGTAGTGCGCTTGGCACCATCATCCAAGGGTTAAACAGACACGGTTGAGT
TAGCTACTGTAGAGTAGGCGTCTTGTGTCTGTTTGTGTGTCGCCTCCCGA
GTCGCCTCCCGAAGGCCATCTCCATCACTGGCCGGGAACGGGCCGGTCGG
TTTCGCCCGTCGCTCGTTTCATCCCCCCCGGTGTACCTACGGACGACGTC
TGTCTGCCCGTGGCCCCAAGCTTCCCAATTTATTACTCGAGTACACGCAC
TTTTCCCGCAACGCCGTCGCCGTGGCGTTTCACTAAAACTTCCCCTTCTT
TTCTCGCCGCCGCCGCCGCCGCCGCCGCCGCGGGCGGCGAACCGAACCGG
ACCGTACCGTACCGAAACCCTACCAGGTCCAGAAAAAGCAGCAGTTCCTC
ACCTACCAGAAGCAGAAGCTTAAGCACGCCCGGGAGAAGGTGGCGGAGCT
GGGGAAGATCCGCAAGAAGGAGCGCCGCGAAGCCATCGAGCTGGCCGAGG
TGGCGGCCGCCGCCGCCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1182989..1186356+

>mRNA_S-ischiensis_contig8.19395.1 ID=mRNA_S-ischiensis_contig8.19395.1|Name=mRNA_S-ischiensis_contig8.19395.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1962bp|location=Sequence derived from alignment at S-ischiensis_contig8:1182989..1186356+ (Schizocladia ischiensis KU_0333)
CACATCGCAGAGGGGCGGGGGGATTCGGTGGCCATCGACTGGGACCCCAA
GTTCGTCACCCGCATGGCCGAGGCGGAGTCCATGATCGGGGACTGGCTCA
AGCACCTGACGGGCTTCCTGTCGTGCCTGGCGCGGCTCTCGACCTCGGCC
TTCCTCTCCACGCCCCCGGGGCCGGGGGCGGCTAAGCCCTCGTCCGACTG
GGACGAGCTGCGTGAGCTGACGGACCGGCTCTGGACCTCCTACCAGGACA
CGGCGGAGCGGATGCTCAAGGTGACGCTGGAGATGCGCCGGGAGCAGCTG
CAGGAGAGCCCCATGCCCATCTCGCTGTGCTTTGCCAGCACCAACCGGGA
CTCCGTGTCGCGGCTCATGGAGCAGAAGCGCCGCGCGGTGGCGGCACTCC
ACGAGGCGGTGGCGGCGGCGGTGCGGCCGCCCGAGGCGAAGCGGCTGCTG
CGGCGGGCGGAGGTGGCCTGGCGCAAGTTCTCGGCGCCCTTGCTGGGGGA
GGGTTTCCAGGAGCTGGATCAGGCGGCGGGGCGGGCGCTGCGCGCGAGGC
TGGACATCTTCACGGACAGCAGCTACATGAGCGCACAGTCCAGCGACGTG
GTGCAGCACGAGCAGCAGGCGGACCACGCGCTGAGGAACGCCATCCAGGA
CTGGGAGAACCAGCTGGACTTGTTCAAGGCGGACTGCGAGAGCAAGCACA
TCGCAGAGGGGCGGGGGGATTCGGTGGCCATCGACTGGGACCCCAAGTTC
GTCACCCGCATGGCCGAGGCGGAGTCCATGATCGGGGACTGGCTCAAGCA
CCTGACGGGCTTCCTGTCGTGCCTGGCGCGGCTCTCGACCTCGGCCTTCC
TCTCCACGCCCCCGGGGCCGGGGGCGGCTAAGCCCTCGTCCGACTGGGAC
GAGCTGCGTGAGCTGACGGACCGGCTCTGGACCTCCTACCAGGACACGGC
GGAGCGGATGCTCAAGGTGACGCTGGAGATGCGCCGGGAGCAGCTGCAGG
AGAGCCCCATGCCCATCTCGCTGTGCTTTGCCAGCACCAACCGGGACTCC
GTGTCGCGGCTCATGGAGCAGAAGCGCCGCGCGGTGGCGGCACTCCACGA
GGCGGTGGCGGCGGCGGTGCGGCCGCCCGAGGCGAAGCGGCTGCTGCGGC
GGGCGGAGGTGGCCTGGCGCAAGTTCTCGGCGCCCTTGCTGGGGGAGGGT
TTCCAGGAGCTGGATCAGGCGGCGGGGCGGGCGCTGCGCGCGAGGCTGGA
CATCTTCACGGACAGCAGCTACATGAGCGCACAGTCCAGCGACGTGGTGC
AGCACGAGCAGCAGGCGGACCACGCGCTGAGGAACGCCATCCAGGACTGG
GAGAACCAGCTGGACTTGTTCAAGGCGGACTGCGAGAGCAAGGCCACGGA
GCATCTGTCGCCGGCGTGCTACCCGCAGGGCGTGGCACACGCGGCGGCCC
TGGAGCGGTGGGCCAAGACCTTCAAGGAGGAGTGGGACGAGAGCGAGGGC
GCTCAGTCCCTGCACGCGCACATCCGCCAGCAGCAGGCCACGGAGCATCT
GTCGCCGGCGTGCTACCCGCAGGGCGTGGCACACGCGGCGGCCCTGGAGC
GGTGGGCCAAGACCTTCAAGGAGGAGTGGGACGAGAGCGAGGGCGCTCAG
TCCCTGCACGCGCACATCCGCCAGCAGCAGGTCCAGAAAAAGCAGCAGTT
CCTCACCTACCAGAAGCAGAAGCTTAAGCACGCCCGGGAGAAGGTGGCGG
AGCTGGGGAAGATCCGCAAGAAGGAGCGCCGCGAAGCCATCGAGCTGGCC
GAGGTGGCGGCCGCCGCCGCCGTCCAGAAAAAGCAGCAGTTCCTCACCTA
CCAGAAGCAGAAGCTTAAGCACGCCCGGGAGAAGGTGGCGGAGCTGGGGA
AGATCCGCAAGAAGGAGCGCCGCGAAGCCATCGAGCTGGCCGAGGTGGCG
GCCGCCGCCGCC
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