mRNA_S-ischiensis_contig8.19394.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19394.1
Unique NamemRNA_S-ischiensis_contig8.19394.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1180675..1182205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size338
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817257.7765493-CDS-S-ischiensis_contig8:1180674..11808321622817257.7765493-CDS-S-ischiensis_contig8:1180674..1180832Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1180675..1180832 +
1695740975.1053913-CDS-S-ischiensis_contig8:1180674..11808321695740975.1053913-CDS-S-ischiensis_contig8:1180674..1180832Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1180675..1180832 +
1622817257.787856-CDS-S-ischiensis_contig8:1182025..11822031622817257.787856-CDS-S-ischiensis_contig8:1182025..1182203Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1182026..1182203 +
1695740975.115931-CDS-S-ischiensis_contig8:1182025..11822031695740975.115931-CDS-S-ischiensis_contig8:1182025..1182203Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1182026..1182203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19394.1prot_S-ischiensis_contig8.19394.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1180675..1182203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19394.1

>prot_S-ischiensis_contig8.19394.1 ID=prot_S-ischiensis_contig8.19394.1|Name=mRNA_S-ischiensis_contig8.19394.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
GPATRATTARGSGSAQQRWRPPYDIGRGRISRPSSSRPSRKRVRRHWKLV
WTSCATGSKPRSAAGVGTTCWRPSRRVLSTAASSSPSRSSWPLAPPATKP
HRGAPGGWGQQG
back to top

mRNA from alignment at S-ischiensis_contig8:1180675..1182205+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19394.1 ID=mRNA_S-ischiensis_contig8.19394.1|Name=mRNA_S-ischiensis_contig8.19394.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1531bp|location=Sequence derived from alignment at S-ischiensis_contig8:1180675..1182205+ (Schizocladia ischiensis KU_0333)
GGGCCAGCGACCCGTGCCACAACGGCCAGGGGCTCGGGTTCAGCCCAGCA
GCGGTGGAGACCGCCATACGACATTGGTCGTGGTCGGATTTCACGTCCAA
GCAGTTCAAGGCCTTCACGCAAGAGGGTCCGCCGGCACTGGAAATTGGTG
TGGACGAGGTGAGCTTTATAGTGGCGACGAGGGGGTTGACACGTGGCTCA
AGCTTCCAGTTAATCTTGGGCCCCTTTCGATTTTTTGCTATTTGCGCCCC
GGCTGCGGCACACCTGCCTAAGTACGGCCGCCCCCCCGCACGCCTGCCTC
CCGGCCTGCCTTCCCTGCCCTTCGCCGCGGCCAAGGTGGCCAGAGCGCAA
CAGCGTGGCACATGTCACCATGGACCCGCTTGCCCCGTGGCTTCTGTTCC
TCCCTGTGCACAGACTAGCCTGCGCGAACCCACTAAAATACTACAACAGG
CACTGCAGTAGTAGGCACTCGAAGTATTGTGGTACTTTTATTCTCAGGCG
AGTCCTGTATACATATACTCATTGGCTTGTCTTGTGACATAGCCTTGCGT
GCCTAGCCGACACCCCAAAGTTACTATTGTAGAGTTCGGGTTTGTACGCC
TGCAGCAGTACGGAGGAGAGCACAAGAAGGCGGGCTGGGGCCCGGGGCGG
TCATGGGGGGCAGGGCTGAGACCATTTTCGGCTCCGCCGTCGGTTGCAGG
CACCTTGTGTGCAAGGCCAACGGGCCGCCGCTGCAGCTGGCAGATCGATG
TGCCTTTTTCCTTGTCAAGCCAGAATGTCTCGCTACCTGGAACCCTCCTC
GTCACGTAAAGCTTTACCCTCTTTACCCGGGAAACGTGCTGTTCTCTCTT
CGTTTCTTGCCTGGGGTGATGCAGCCGCTTGCAGTGGGGGATGTGGTCTT
TGAGCAGACCTTGCTTCGTTAGGTGAGTATATGGGGGGAGATTTGGAAAA
TTGGTTAAGTATCAGAGTATGCTGCCCACGGGGCTGTTCCTAACGCCCGC
ACAGCACCCATCCCGGCCGCTCAGGTCTGAATCCACGAAGATACGAAAGC
GGAATCGCGGATCCAAAATCGATCGCGCATTTCTCTCGTGGAGAACCATA
TCTAGAGTGGGATGATTGGGCAGGCCGATGCGCAGCGGCCCCTGATGCAC
CTACTGTACTTATGAAAGTGGCCACGCCTGTATCAAGAGACTATTCTCCT
GTTGGTGCGCTAACACCAATCCCTGCGGCCTCCTGCTCATGGCCATGGCT
GCCGCCCGCCCCCTCTGGTTCCCTGCCCCCCTGGTGCCGGCGTGCGCACA
CGCCCACATACACACACACACACACACACTCACGCACGAACCACCGCGCA
GCTGCGCCACCGGATCGAAGCCACGCAGTGCCGCCGGTGTCGGGACCACC
TGCTGGAGGCCCTCGAGAAGGGTGCTCTCAACGGCGGCCTCGAGCTCACC
AAGCAGATCAAGCTGGCCGCTTGCCCCGCCGGCGACAAAACCGCACAGGG
GGGCTCCCGGCGGCTGGGGGCAGCAGGGGCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:1180675..1182205+

>mRNA_S-ischiensis_contig8.19394.1 ID=mRNA_S-ischiensis_contig8.19394.1|Name=mRNA_S-ischiensis_contig8.19394.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig8:1180675..1182205+ (Schizocladia ischiensis KU_0333)
GGGCCAGCGACCCGTGCCACAACGGCCAGGGGCTCGGGTTCAGCCCAGCA
GCGGTGGAGACCGCCATACGACATTGGTCGTGGTCGGATTTCACGTCCAA
GCAGTTCAAGGCCTTCACGCAAGAGGGTCCGCCGGCACTGGAAATTGGTG
TGGACGAGGGGCCAGCGACCCGTGCCACAACGGCCAGGGGCTCGGGTTCA
GCCCAGCAGCGGTGGAGACCGCCATACGACATTGGTCGTGGTCGGATTTC
ACGTCCAAGCAGTTCAAGGCCTTCACGCAAGAGGGTCCGCCGGCACTGGA
AATTGGTGTGGACGAGCTGCGCCACCGGATCGAAGCCACGCAGTGCCGCC
GGTGTCGGGACCACCTGCTGGAGGCCCTCGAGAAGGGTGCTCTCAACGGC
GGCCTCGAGCTCACCAAGCAGATCAAGCTGGCCGCTTGCCCCGCCGGCGA
CAAAACCGCACAGGGGGGCTCCCGGCGGCTGGGGGCAGCAGGGGCTGCGC
CACCGGATCGAAGCCACGCAGTGCCGCCGGTGTCGGGACCACCTGCTGGA
GGCCCTCGAGAAGGGTGCTCTCAACGGCGGCCTCGAGCTCACCAAGCAGA
TCAAGCTGGCCGCTTGCCCCGCCGGCGACAAAACCGCACAGGGGGGCTCC
CGGCGGCTGGGGGCAGCAGGGG
back to top