mRNA_S-ischiensis_contig8.19391.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19391.1
Unique NamemRNA_S-ischiensis_contig8.19391.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19391.1 vs. uniprot
Match: A0A1V9YRT3_9STRA (Carbohydrate-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YRT3_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.660e-33
Identity = 67/153 (43.79%), Postives = 95/153 (62.09%), Query Frame = 1
Query:    1 GGDDICSDKAALKAEGVTHIVNCTTRTPNFYHDDFAYLRIPLGDHPSEDISGWFGATNAHIEAARRTGGACLVHCNAGMSRSVALVLAYLMRYEKMSLLAAFELCKAKRPQSSPNIGFMAQLLVYEQQLFNRITLDKEKYEFDRFARAETLVI 459
            GG+D  +D   L+   +THIVNCT  TPN++ + F YL+IP+ D P  +I  +F      I  A     AC+VHC+ GMSRS  +VLAYLM+Y++M+LL A    ++ R   SPNIGFM QLL  E  ++   +LD ++Y+ DRFA  + L +
Sbjct:   46 GGNDCVNDLLVLQTMDITHIVNCTRETPNYFTEHFEYLQIPINDDPDVNIDMYFEEICTFIHKAIENKMACMVHCSHGMSRSATIVLAYLMQYKEMTLLQALTYLRSLRRVVSPNIGFMQQLLTLELSIYQVNSLDLQEYKKDRFAPVQDLAM 198          
BLAST of mRNA_S-ischiensis_contig8.19391.1 vs. uniprot
Match: A0A835ZD16_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD16_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.040e-33
Identity = 72/164 (43.90%), Postives = 96/164 (58.54%), Query Frame = 1
Query:    4 GDDICSDKAALKAEGVTHIVNCTTRTPNFYHDD---------FAYLRIPLGDHPSEDISGWFGATNAHIEAARRTGGACLVHCNAGMSRSVALVLAYLMRYEKMSLLAAFELCKAKRPQSSPNIGFMAQLLVYEQQLFNRITLDKEKYEFDRFARAETLVIEAS 468
            G+DI  DK A+KA G+THI+NCT   PN + D          F YL++ L D   +DI+     +   IE AR  GG CLVHC++GMSRS  + +AYL+++  M+LL A  L K +R Q+SPN GF++QLL  E  +    TLD  KY  DRFA   +   E S
Sbjct:   78 GEDITLDKDAMKAMGITHIINCTRHCPNLFPDHSGQPVPTEGFHYLKLSLQDSIDQDITSALAPSFRMIEEARACGGCCLVHCSSGMSRSATITIAYLVQHRNMTLLDAMHLTKDRRRQTSPNPGFVSQLLDLEHVVHACHTLDLGKYCEDRFASTASWTPEVS 241          
BLAST of mRNA_S-ischiensis_contig8.19391.1 vs. uniprot
Match: A0A1V9Z4X6_9STRA (Dual specificity protein phosphatase 2-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4X6_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.940e-33
Identity = 64/153 (41.83%), Postives = 94/153 (61.44%), Query Frame = 1
Query:    1 GGDDICSDKAALKAEGVTHIVNCTTRTPNFYHDDFAYLRIPLGDHPSEDISGWFGATNAHIEAARRTGGACLVHCNAGMSRSVALVLAYLMRYEKMSLLAAFELCKAKRPQSSPNIGFMAQLLVYEQQLFNRITLDKEKYEFDRFARAETLVI 459
            GG+D  +D  AL + GVTHIVNCT  TP+++ +   YLR+ + D P   I  +F    + I  A     ACLVHC+ GMSRS  +VLAYL+ +  M LL A +  +A+R   SPN+GFM +L+  E ++ +  +LD ++Y+ DRFA  + L +
Sbjct:   42 GGNDCVNDLPALLSMGVTHIVNCTRETPDYFPEHVEYLRVAVTDEPEVAIDAFFDEACSFINKAVDNKRACLVHCSHGMSRSATIVLAYLISHRGMQLLEALDYLRARRRVVSPNVGFMQRLVELEIKVHHAASLDLQEYKKDRFAPIQNLAL 194          
BLAST of mRNA_S-ischiensis_contig8.19391.1 vs. uniprot
Match: A0A067CZI3_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CZI3_SAPPC)

HSP 1 Score: 122 bits (307), Expect = 3.230e-32
Identity = 64/153 (41.83%), Postives = 89/153 (58.17%), Query Frame = 1
Query:    1 GGDDICSDKAALKAEGVTHIVNCTTRTPNFYHDDFAYLRIPLGDHPSEDISGWFGATNAHIEAARRTGGACLVHCNAGMSRSVALVLAYLMRYEKMSLLAAFELCKAKRPQSSPNIGFMAQLLVYEQQLFNRITLDKEKYEFDRFARAETLVI 459
            GG+D  +D   L    ++H+VNCT  TPN++ D   YLR+P+ D P  +I  +F    A I  A     AC+VHC+ GMSRS  +VLAYL++  KM LL A +  ++ R   SPNIGFM +LL  E  + +  +LD + Y  DRFA    L +
Sbjct:   43 GGNDCVNDLDVLGTMDISHVVNCTRETPNYFPDRVEYLRVPITDEPEMEIDMYFDDACAFIHKAVENHMACMVHCSHGMSRSATIVLAYLVKIRKMRLLDALQYLRSLRRVVSPNIGFMQRLLELEMAVHDANSLDLQAYTKDRFAPIPDLAL 195          
BLAST of mRNA_S-ischiensis_contig8.19391.1 vs. uniprot
Match: A0A835ZAL8_9STRA (Protein-tyrosine phosphatase-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL8_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.350e-31
Identity = 62/126 (49.21%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   19 SDKAALKAEGVTHIVNCTTRTPNFYHDDFAYLRIPLGDHPSEDISGWFGATNAHIEAARRTGGACLVHCNAGMSRSVALVLAYLMRYEKMSLLAAFELCKAKRPQSSPNIGFMAQLLVYEQQLFNR 396
            +D   ++  G+  +VNCT   PNF+ D  AYLR+ L D   + IS  F A  + I+ AR  GGACLVHC AG+SRS ALV+AYLM+ ++ SL AA    +  RP  SPN  FMAQL  YE  LF R
Sbjct:    2 ADLDTMQKLGIVRVVNCTRGCPNFHPDQLAYLRLELADAGHQKISHCFDAVVSAIDCARAAGGACLVHCTAGISRSPALVIAYLMKTKRWSLAAALAHMQKCRPSVSPNPAFMAQLAAYEASLFAR 127          
BLAST of mRNA_S-ischiensis_contig8.19391.1 vs. uniprot
Match: A0A077ZA15_TRITR (Dual specificity protein phosphatase n=1 Tax=Trichuris trichiura TaxID=36087 RepID=A0A077ZA15_TRITR)

HSP 1 Score: 120 bits (302), Expect = 1.200e-29
Identity = 58/117 (49.57%), Postives = 81/117 (69.23%), Query Frame = 1
Query:   49 VTHIVNCTTRTPNFYHDDFAYLRIPLGDHPSEDISGWFGATNAHIEAARRTGGACLVHCNAGMSRSVALVLAYLMRYEKMSLLAAFELCKAKRPQSSPNIGFMAQLLVYEQQLFNRI 399
            VTHI+N  T+  N++ + F Y RI + D P+EDI  +F   N  I  ARR  G CLVHCNAG+SRSV++V+AYL++YE+MS+ +A    KA RP + PN GF+ QLL YE+++  R+
Sbjct:  290 VTHIINAGTKVENYFPETFVYKRIVIQDLPTEDIKKYFEECNDFINQARRANGRCLVHCNAGISRSVSIVMAYLIKYEEMSVKSALYYVKAIRPVAQPNNGFLLQLLEYEEEVRGRL 406          
BLAST of mRNA_S-ischiensis_contig8.19391.1 vs. uniprot
Match: H9GKZ7_ANOCA (Uncharacterized protein n=1 Tax=Anolis carolinensis TaxID=28377 RepID=H9GKZ7_ANOCA)

HSP 1 Score: 115 bits (289), Expect = 1.550e-29
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 1
Query:   13 ICSDKAALKAEGVTHIVNCTTRTPNFYHDDFAYLRIPLGDHPSEDISGWFGATNAHIEAARRTGGACLVHCNAGMSRSVALVLAYLMRYEKMSLLAAFELCKAKRPQSSPNIGFMAQLLVYEQQLFNR 396
            + S++  L A G+T IVN T   PN    DF Y R+P+ D PS  IS +F +    I++  R  GA LVHC AG+SRS  L +AYLM+Y+ +SL  A+   K++RP   PN+GF  QL+ YE++L+ R
Sbjct:   42 VASNRQLLLARGITCIVNATVEVPNANFPDFEYYRVPVADMPSAPISMYFDSVADKIQSVARKRGATLVHCAAGVSRSATLCIAYLMKYQNVSLSEAYNWVKSRRPVIHPNVGFWRQLIDYERELYGR 169          
BLAST of mRNA_S-ischiensis_contig8.19391.1 vs. uniprot
Match: A0A670K0K1_PODMU (Dual specificity phosphatase 14 n=4 Tax=Bifurcata TaxID=1329961 RepID=A0A670K0K1_PODMU)

HSP 1 Score: 115 bits (288), Expect = 2.140e-29
Identity = 55/131 (41.98%), Postives = 84/131 (64.12%), Query Frame = 1
Query:   13 ICSDKAALKAEGVTHIVNCTTRTPNFYHDDFAYLRIPLGDHPSEDISGWFGATNAHIEAARRTGGACLVHCNAGMSRSVALVLAYLMRYEKMSLLAAFELCKAKRPQSSPNIGFMAQLLVYEQQLFNRITL 405
            + S++  L A G+T IVN T   PNF   +F Y+++P+ D P+  IS +F +    I++  R  G  LVHC AG+SRS  L +AYLM+Y+ ++LL A+   K++RP   PN+GF  QL+ YE++L+ R T+
Sbjct:   41 VASNRQLLLARGITCIVNATIELPNFNFPEFEYVKVPVADMPNAPISLYFDSVADKIQSVARKHGVTLVHCAAGVSRSATLCIAYLMKYQNVTLLEAYNWVKSRRPVIHPNVGFWRQLIDYERELYGRNTV 171          
BLAST of mRNA_S-ischiensis_contig8.19391.1 vs. uniprot
Match: A0A836CCP8_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCP8_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.040e-29
Identity = 65/149 (43.62%), Postives = 88/149 (59.06%), Query Frame = 1
Query:   13 ICSDKAALKAEGVTHIVNCTTRTPNFYHDDFAYLRIPLGDHPSEDISGWFGATNAHIEAARRTGGACLVHCNAGMSRSVALVLAYLMRYEKMSLLAAFELCKAKRPQSSPNIGFMAQLLVYEQQLFNR--ITLDKEKYEFDRFARAETL 453
            + +D  A++   +  ++NCT   PNFY ++  Y+++ L D   + IS  F    A IE AR  GG CLVHC AG+SRS AL +AYLMR ++  L AA    +A+RP +SP   FMAQL  YE  LF R   T+  + Y  +RFARA  L
Sbjct:   30 LAADLEAMRQLRIVIVINCTRSCPNFYPEELVYVQLGLEDSERQCISHCFEGVAAAIEHARTLGGVCLVHCTAGISRSAALAIAYLMRSQRWPLAAALAHVQARRPSASPRPAFMAQLAAYEVGLFGRGAATVCLDAYAANRFARAADL 178          
BLAST of mRNA_S-ischiensis_contig8.19391.1 vs. uniprot
Match: A0A0R3PLE6_ANGCS (Uncharacterized protein n=1 Tax=Angiostrongylus costaricensis TaxID=334426 RepID=A0A0R3PLE6_ANGCS)

HSP 1 Score: 117 bits (292), Expect = 3.420e-29
Identity = 61/138 (44.20%), Postives = 80/138 (57.97%), Query Frame = 1
Query:    1 GGDDICSDKAALKAEGVTHIVNCTTRTPNFYHDDFAYLRIPLGDHPSEDISGWFGATNAHIEAARRTGGACLVHCNAGMSRSVALVLAYLMRYEKMSLLAAFELCKAKRPQSSPNIGFMAQLLVYEQQLFNRITLDKE 414
            G  D+ S+ A LKAEG+THIVNC T   N+Y   F Y  + + D PS DI   F      +      GG  LVHCNAG+SRS   V+AYLM +  MSL  A E  +  RP+  PN GFM QL  +E++LF+ +  ++E
Sbjct:  133 GSQDVASELAILKAEGITHIVNCATGVMNYYPTKFTYYNLEVLDLPSTDIMAKFHEVCRFMVNCVGGGGKVLVHCNAGISRSATFVIAYLMIHHSMSLQCALETVRRIRPKVRPNCGFMKQLQCFEKELFSSLPCEEE 270          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V9YRT3_9STRA1.660e-3343.79Carbohydrate-binding protein n=1 Tax=Thraustotheca... [more]
A0A835ZD16_9STRA3.040e-3343.90Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A1V9Z4X6_9STRA3.940e-3341.83Dual specificity protein phosphatase 2-like n=1 Ta... [more]
A0A067CZI3_SAPPC3.230e-3241.83Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A835ZAL8_9STRA5.350e-3149.21Protein-tyrosine phosphatase-like protein (Fragmen... [more]
A0A077ZA15_TRITR1.200e-2949.57Dual specificity protein phosphatase n=1 Tax=Trich... [more]
H9GKZ7_ANOCA1.550e-2944.53Uncharacterized protein n=1 Tax=Anolis carolinensi... [more]
A0A670K0K1_PODMU2.140e-2941.98Dual specificity phosphatase 14 n=4 Tax=Bifurcata ... [more]
A0A836CCP8_9STRA3.040e-2943.62Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A0R3PLE6_ANGCS3.420e-2944.20Uncharacterized protein n=1 Tax=Angiostrongylus co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1150685..1151155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue2.9e-28
Seed eggNOG ortholog157072.XP_008877060.1
KEGG koko:K04459,ko:K14165
KEGG Pathwayko04010,map04010
EggNOG free text desc.protein tyrosine/serine/threonine phosphatase activity
EggNOG OGsCOG2453@1,KOG1718@2759
EC3.1.3.16,3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817278.3793163-CDS-S-ischiensis_contig8:1150684..11511551622817278.3793163-CDS-S-ischiensis_contig8:1150684..1151155Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1150685..1151155 +
1695740990.1283464-CDS-S-ischiensis_contig8:1150684..11511551695740990.1283464-CDS-S-ischiensis_contig8:1150684..1151155Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1150685..1151155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19391.1prot_S-ischiensis_contig8.19391.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1150685..1151155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19391.1

>prot_S-ischiensis_contig8.19391.1 ID=prot_S-ischiensis_contig8.19391.1|Name=mRNA_S-ischiensis_contig8.19391.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=157bp
GGDDICSDKAALKAEGVTHIVNCTTRTPNFYHDDFAYLRIPLGDHPSEDI
SGWFGATNAHIEAARRTGGACLVHCNAGMSRSVALVLAYLMRYEKMSLLA
AFELCKAKRPQSSPNIGFMAQLLVYEQQLFNRITLDKEKYEFDRFARAET
LVIEAS*
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mRNA from alignment at S-ischiensis_contig8:1150685..1151155+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19391.1 ID=mRNA_S-ischiensis_contig8.19391.1|Name=mRNA_S-ischiensis_contig8.19391.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=471bp|location=Sequence derived from alignment at S-ischiensis_contig8:1150685..1151155+ (Schizocladia ischiensis KU_0333)
GGGGGCGACGACATCTGCAGCGACAAGGCTGCTCTGAAGGCCGAGGGTGT CACGCACATCGTCAACTGCACGACCAGGACTCCTAACTTCTACCACGACG ACTTTGCGTACCTGCGCATCCCGCTTGGAGACCACCCGTCCGAGGACATC TCTGGGTGGTTTGGGGCAACGAACGCGCACATCGAGGCGGCCAGGCGGAC TGGAGGAGCGTGCCTTGTCCACTGCAACGCGGGCATGAGCCGGAGCGTCG CGCTGGTCTTGGCCTACCTGATGCGGTACGAGAAGATGTCGCTCCTGGCG GCGTTCGAACTGTGCAAGGCCAAGAGACCGCAGAGCTCTCCAAACATCGG CTTCATGGCACAGCTGCTCGTGTACGAGCAGCAGCTGTTCAACCGCATCA CCCTCGACAAGGAGAAGTACGAGTTTGACCGCTTCGCACGGGCGGAAACC TTGGTCATTGAAGCGTCGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1150685..1151155+

>mRNA_S-ischiensis_contig8.19391.1 ID=mRNA_S-ischiensis_contig8.19391.1|Name=mRNA_S-ischiensis_contig8.19391.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=942bp|location=Sequence derived from alignment at S-ischiensis_contig8:1150685..1151155+ (Schizocladia ischiensis KU_0333)
GGGGGCGACGACATCTGCAGCGACAAGGCTGCTCTGAAGGCCGAGGGTGT
CACGCACATCGTCAACTGCACGACCAGGACTCCTAACTTCTACCACGACG
ACTTTGCGTACCTGCGCATCCCGCTTGGAGACCACCCGTCCGAGGACATC
TCTGGGTGGTTTGGGGCAACGAACGCGCACATCGAGGCGGCCAGGCGGAC
TGGAGGAGCGTGCCTTGTCCACTGCAACGCGGGCATGAGCCGGAGCGTCG
CGCTGGTCTTGGCCTACCTGATGCGGTACGAGAAGATGTCGCTCCTGGCG
GCGTTCGAACTGTGCAAGGCCAAGAGACCGCAGAGCTCTCCAAACATCGG
CTTCATGGCACAGCTGCTCGTGTACGAGCAGCAGCTGTTCAACCGCATCA
CCCTCGACAAGGAGAAGTACGAGTTTGACCGCTTCGCACGGGCGGAAACC
TTGGTCATTGAAGCGTCGTGAGGGGGCGACGACATCTGCAGCGACAAGGC
TGCTCTGAAGGCCGAGGGTGTCACGCACATCGTCAACTGCACGACCAGGA
CTCCTAACTTCTACCACGACGACTTTGCGTACCTGCGCATCCCGCTTGGA
GACCACCCGTCCGAGGACATCTCTGGGTGGTTTGGGGCAACGAACGCGCA
CATCGAGGCGGCCAGGCGGACTGGAGGAGCGTGCCTTGTCCACTGCAACG
CGGGCATGAGCCGGAGCGTCGCGCTGGTCTTGGCCTACCTGATGCGGTAC
GAGAAGATGTCGCTCCTGGCGGCGTTCGAACTGTGCAAGGCCAAGAGACC
GCAGAGCTCTCCAAACATCGGCTTCATGGCACAGCTGCTCGTGTACGAGC
AGCAGCTGTTCAACCGCATCACCCTCGACAAGGAGAAGTACGAGTTTGAC
CGCTTCGCACGGGCGGAAACCTTGGTCATTGAAGCGTCGTGA
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