mRNA_S-ischiensis_contig8.19383.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19383.1 vs. uniprot
Match: D7G700_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G700_ECTSI) HSP 1 Score: 253 bits (647), Expect = 1.460e-72 Identity = 150/327 (45.87%), Postives = 197/327 (60.24%), Query Frame = 1
Query: 19 VVSTRGLRKALSMRLVDTQPAPG-----------GGGGNGGERAWFVVWVMDVESGAEWRVTRSTQQFRELHQGCVALRPSIARMDFPGPLPGVKETPGILEARRQRLEAYLQRVAGMLYLAPLHPASGRVAQLLQDFLDLPSRVESLARLQRTRPERELRQAIQVHVWRVLRLPPLERALGDFVQRLTEPEKGAAPLT--GDEALERLREFIGRLQAALTDGCYTRLRAMVEAHRVAVEAEAAXXXXXXXXXXXXAIDPRSAPAHLPPLRSLGSAGERASQGGSAVDESTRLAAEEEDLQLISGSVRRQVESEVFVPAMKFLYSRL 960
VV T+GLRKAL++R+++ P GG + + A ++VWVMDVESGAEWRV R +F EL + C +RPS+AR+DFP LP VKET G+++ARR RLEAYLQR+ +LY+ PLHP+S +A LLQDFL RVE+L RLQR+RPERELRQA+QV W++ RLPPLERA+ DFV+ + + + T + L+RL + I LQ +T+GC+ LR MV + A+ + H S G E GG+ E LA E+E L LISGSVRRQVE+EVFVP M +Y +L
Sbjct: 699 VVPTQGLRKALNVRILEQPPXXXXXXXXXXXDGKGGRSSAPQTASYLVWVMDVESGAEWRVRRCHPEFSELWEVCTGMRPSLARLDFPPWLPDVKETAGVVDARRPRLEAYLQRLCSLLYMGPLHPSSAHLAHLLQDFLGTSPRVETLGRLQRSRPERELRQALQVRAWQMFRLPPLERAVADFVREICDSPASRSKKTVPAEAVLKRLTDVIEHLQYVVTEGCFNELREMVRSSS--------------------AVTTSAGRGH-----SSGRGSEXXEGGGNDHPELASLAEEDEALDLISGSVRRQVEAEVFVPVMGRIYKKL 1000
BLAST of mRNA_S-ischiensis_contig8.19383.1 vs. uniprot
Match: A0A7S3NP42_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NP42_9STRA) HSP 1 Score: 148 bits (374), Expect = 5.230e-36 Identity = 87/212 (41.04%), Postives = 128/212 (60.38%), Query Frame = 1
Query: 37 LRKALSMRLVDTQPAPGGGGGNGGERAWFVVWVMDVESGAEWRVTRSTQQFRELHQGCVALRPSIARMDFPGPLPGVKETPGILEARRQRLEAYLQRVAGMLYLAPLHPASGRVAQLLQDFLDLPSRVESLARLQRTRPERELRQAIQVHVWRVLRLPPLERALGDFVQRLTEPEKGAAPLTGDEALERLREFIGRLQAALTDGCYTRLRAM 672
LR AL +R++ T + +++WV+DV +GAEWRV R ++F ELH+ + LRPSI ++DFP P + ET + RR RLE Y++RVAGML + LHP S VA++LQ FLD+P R SL L+R P+ LRQA QV +VL LP L++ L D V + + GD L++++++I LQAA+ DG + L+++
Sbjct: 407 LRPALCVRILGTDYVE--------DHTVYILWVLDVLAGAEWRVQRRFREFFELHEELIKLRPSIDKLDFPTRRPSIYETVHTVNDRRVRLERYIRRVAGMLTSSRLHPRSSDVARVLQRFLDVPKRRASLELLERN-PDITLRQACQVATAQVLSLPVLDKLLSDVVSSTQSHDFES----GDAMLQKMKQYIDHLQAAILDGSHDLLKSV 605
BLAST of mRNA_S-ischiensis_contig8.19383.1 vs. uniprot
Match: F0XY90_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY90_AURAN) HSP 1 Score: 149 bits (375), Expect = 5.910e-36 Identity = 110/315 (34.92%), Postives = 154/315 (48.89%), Query Frame = 1
Query: 22 VSTRGLRKALSMRLVDTQPAPGGGGGNGGERAWFVVWVMDVESGAEWRVTRSTQQFRELHQGCVALRPSIARMDFPGPLPGVKETPGILEARRQRLEAYLQRVAGMLYLAPLHPASGRVAQLLQDFLDLPSRVESLARLQRTRPERELRQAIQVHVWRVLRLPPLERALGDFVQRLTEPEKGAAPLTGDEALERLREFIGRLQAALTDGCYTRLRAMVEAHRVAVEAEAAXXXXXXXXXXXXAIDPRSAPAHLPPLRSLGSAGERASQGGSAVDESTRLAAEEEDLQ-LISGSVRRQVESEVFVPAMKFLYSRLR 963
V T LR AL +R++ T A + +++WV+DV +GAEWRV R ++F ELH+ VALRPS ++DFP P + ET + RR RLE Y +RV+GML+ A LH SG VA LQ FLD+P R SL L+R P+ LRQA QV V +VL LP E+ L D V G A +G + L +++++I LQA L +GC L A+ + + E+DL ++S ++RRQ+E+E+FVP M L+ LR
Sbjct: 314 VDTARLRPALCVRILGTDYAD--------DHTVYILWVLDVLAGAEWRVPRRFREFFELHEELVALRPSTEKLDFPTRRPSLYETTHSVNDRRVRLERYARRVSGMLFGARLHAHSGDVALALQRFLDVPKRRASLELLERN-PDITLRQAAQVAVCQVLALPAFEKILADIVAAAG----GHAFESGLDMLAKMKQYIDHLQACLLEGCADLLVAVALRRKSCIA--------------------------------------------------------EDDLNAILSSAIRRQIETEIFVPLMDKLHGLLR 559
BLAST of mRNA_S-ischiensis_contig8.19383.1 vs. uniprot
Match: A0A7S2G0S3_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G0S3_9STRA) HSP 1 Score: 142 bits (359), Expect = 2.330e-35 Identity = 101/317 (31.86%), Postives = 158/317 (49.84%), Query Frame = 1
Query: 10 LEGVVSTRGLRKALSMRLVDTQPAPGGGGGNGGERAWFVVWVMDVESGAEWRVTRSTQQFRELHQGCVALRPSIARMDFPGPLPGVKETPGILEARRQRLEAYLQRVAGMLYLAPLHPASGRVAQLLQDFLDLPSRVESLARLQRTRPERELRQAIQVHVWRVLRLPPLERALGDFVQRLTEPEKGAAPLTGDEALERLREFIGRLQAALTDGCYTRLRAMVEAHRVAVEAEAAXXXXXXXXXXXXAIDPRSAPAHLPPLRSLGSAGERASQGGSAVDESTRLAAEEEDLQLISGSVRRQVESEVFVPAMKFLYSRL 960
L V T GLR AL +R++ +VVW+ DV+SGAEW +R + FR L +LRPS+ ++FP P + +T + RR +LE +L+++ +L+ A LHPAS ++AQ ++DFL + SR +SL +L + LRQ++QVHV+R L LP LE L +F+ +L + A +G E L+ +++FI LQ + +GC L + +R+ ++A L S + S +E D ++I+ +VRRQVES++FVP LY L
Sbjct: 3 LSHAVPTSGLRPALCIRVIACD--------YNDYHTQYVVWIQDVQSGAEWHCSRRFRDFRHLRAVVNSLRPSLDHLEFPMQRP-LYDTMATVTTRRYKLEQWLRQIGSLLFSAHLHPASLQIAQHIEDFLGVASRQDSL-KLLTVKHRHRLRQSVQVHVFRALSLPILESVLANFITQL----RTVALESGTEMLQLMKQFINHLQQCIVEGCGASLHKCLHRNRLLLKAR---------------------------LSSTAPQSDHHEHDYSYAYSEIHSDTKEPDDRIIAAAVRRQVESDIFVPLTGKLYELL 278
BLAST of mRNA_S-ischiensis_contig8.19383.1 vs. uniprot
Match: A0A7S2CVH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CVH7_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.930e-30 Identity = 67/164 (40.85%), Postives = 103/164 (62.80%), Query Frame = 1
Query: 4 GGLEGVVSTRGLRKALSMRLVDTQPAPGGGGGNGGERAWFVVWVMDVESGAEWRVTRSTQQFRELHQGCVALRPSIARMDFPGPLPGVKETPGILEARRQRLEAYLQRVAGMLYLAPLHPASGRVAQLLQDFLDLPSRVESLARLQRTRPERELRQAIQVHVWR 495
GG + VVS GLR AL +R++ + + +++WV+DVESGAEWR++R ++F +L + ALRPS+ ++DFP P + ET + R+ RLE +L+RV+ +L APLH S +A +QDFLD SR E L + R +P+R +R ++Q+HV+R
Sbjct: 6 GGGQIVVSMDGLRPALCIRVLGAEHLE--------DHTEYLIWVLDVESGAEWRISRRYREFFDLAERLQALRPSLLKLDFPARRPALYETVATVNDRKARLEKWLRRVSSLLCYAPLHIQSANIALHVQDFLDASSREEKLNSIAR-QPDRIVRHSVQIHVFR 160
BLAST of mRNA_S-ischiensis_contig8.19383.1 vs. uniprot
Match: A0A4D9DGA1_9STRA (VPS9 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGA1_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 5.640e-12 Identity = 77/251 (30.68%), Postives = 109/251 (43.43%), Query Frame = 1
Query: 16 GVVSTRGLRKALSMRLVDTQPAPGGGGGNGGERAW----FVVWVMDVESGAEWRVTRSTQQFRELHQGCVALRPSIARMD---FPGPLPGVKETPGILEARRQRLEAYLQRVAGMLYL---------APLHPASG----------RVAQLLQDFLDLPSRVESLARLQRT----RPERELRQAIQVHVWRVLRL-----------PPLERALGDFVQRLTEPEKGAAPLTGDEALERLREFIGRLQAALTD 645
GV+ T LR+A Q G GG G+R FV+WV+D+ESG EWRV + + LH+ +RP +D FP + P LE ++ RLE YL+R+ G+ +PL PA+ VA++LQDFL RV+ L + T P+R LR+ IQV W +R ++ L FV+R E + L L +F+GR L D
Sbjct: 480 GVMPTGWLRRAAGG-----QSHGAGRGGKAGKRISETYRFVLWVLDLESGEEWRVRKGPSEMLALHEAVSVMRPGSVGIDGIKFPLKRHKSETNPPSLE-KQARLEQYLRRLTGVSSSHSMVTSSPPSPLGPAAKPVVPSQETDYEVAKVLQDFLGATERVDELTTMAHTVGKGDPQRSLRRRIQVCTWEGIRKGIEINDGGGGGESMQAKLEVFVKRTKECDVQETDL-----LRAYSDFLGRSSRQLLD 719
BLAST of mRNA_S-ischiensis_contig8.19383.1 vs. uniprot
Match: A0A7R9Y923_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y923_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 8.200e-10 Identity = 50/141 (35.46%), Postives = 79/141 (56.03%), Query Frame = 1
Query: 133 VMDVESGAEWRVTRSTQQFRELHQGCVALRPSIARMDFPGPL-PGVKETPGILEARRQRLEAYLQRVAGMLYLAPLHPASGRVAQLLQDFLDLPSRVESL-ARLQRTRPERELRQAIQVHVWRVLRLPPLERALGDFVQRL 549
V D+ +G W R+ Q + L Q V LRPSI + FPG + PG + E R +EA+++R+ G+++ APLH ++ V QLLQ FL + +RV L A + +T L +I+ ++RVL +P + R + F + L
Sbjct: 101 VRDIAAGTGWVQCRTFGQLKYLRQLLVILRPSIETIPFPGDVRPGRGVVNPVYEWGRA-IEAWIKRMLGLVFYAPLHDSNLEVQQLLQAFLGVGTRVLELEATVSQTSVFERLGASIEAKIYRVLDVPCIRRRMDLFHRNL 240
BLAST of mRNA_S-ischiensis_contig8.19383.1 vs. uniprot
Match: W7TVQ2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVQ2_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 9.370e-10 Identity = 61/182 (33.52%), Postives = 88/182 (48.35%), Query Frame = 1
Query: 16 GVVSTRGLRKALSMRLVDTQPAPGGGGGNGGERAWFVVWVMDVESGAEWRVTRSTQQFRELHQGCVALRPSIARMD---FPGPLPGVKETPGILEARRQRLEAYLQRVAG------MLYLAPLHP--ASGR-----------VAQLLQDFLDLPSRVESLARLQRT----RPERELRQAIQV 483
GV+ T LR+A + + G G E FV+WV+D+ESG EWRV + + LH+ A+RP +D FP + P LE ++ RLE YL+R+ G M+ +P P A+ R VA++LQDFL RV+ L + T P+R LR+ IQ+
Sbjct: 480 GVMPTGWLRRAAGGQSHLGEGRGGKTGKRVSETYQFVLWVLDLESGEEWRVRKGPSEMLALHEAVSAMRPGSLGIDGVKFPLKRHKSETNPPSLE-KQARLEEYLRRLTGVSSSHSMVSSSPPSPLGAAARPAVPSQETDYEVAKVLQDFLGATERVDELTTMAHTVGKGDPQRRLRRQIQL 660
BLAST of mRNA_S-ischiensis_contig8.19383.1 vs. uniprot
Match: A0A6H5KQH5_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH5_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 5.640e-9 Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 19 VVSTRGLRKALSMRLVDTQPAPG---------------GGGGNGGERAWFVVWVMDVESGAEWRVTRSTQQFRELHQGCVALRPSIAR 237
VV T+GLRKAL++R+++ QP GG + + ++VWVMDVESGAEWRV R +F EL + C +RPS+AR
Sbjct: 697 VVPTQGLRKALNVRILE-QPXXXXXXXXXXXXXSDDAKGGRSSAPQTVSYLVWVMDVESGAEWRVRRRHPEFSELWEVCTGMRPSLAR 783 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19383.1 >prot_S-ischiensis_contig8.19383.1 ID=prot_S-ischiensis_contig8.19383.1|Name=mRNA_S-ischiensis_contig8.19383.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=343bp VGGLEGVVSTRGLRKALSMRLVDTQPAPGGGGGNGGERAWFVVWVMDVESback to top mRNA from alignment at S-ischiensis_contig8:1081280..1086815- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19383.1 ID=mRNA_S-ischiensis_contig8.19383.1|Name=mRNA_S-ischiensis_contig8.19383.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5536bp|location=Sequence derived from alignment at S-ischiensis_contig8:1081280..1086815- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:1081280..1086815- >mRNA_S-ischiensis_contig8.19383.1 ID=mRNA_S-ischiensis_contig8.19383.1|Name=mRNA_S-ischiensis_contig8.19383.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2058bp|location=Sequence derived from alignment at S-ischiensis_contig8:1081280..1086815- (Schizocladia ischiensis KU_0333)back to top |