mRNA_S-ischiensis_contig8.19381.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19381.1
Unique NamemRNA_S-ischiensis_contig8.19381.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19381.1 vs. uniprot
Match: D7G702_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G702_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 7.730e-5
Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = -2 
Query:   18 NFEDEFDPILAEIRTGS--PSVELAVKGTAAPPTTGLETGPGPDEGTAAQG-DKKDGQQAAVGAAAAAGFLALLPGDVRSRASDAIAQSAVTMERSAGALATMFG 323
            NFEDEFDPILA IR     P+   A   + +P                 +G +  D  +   G++ AAGFL++LPGD+R++A + +AQS+  +  SA A  +  G
Sbjct:  134 NFEDEFDPILASIRKPQQPPASTTAAASSMSPRGRXXXXXXXXXPSGRERGREANDAGRPTTGSSLAAGFLSMLPGDMRAKAGEVMAQSSARISESANAFRSALG 238
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G702_ECTSI7.730e-535.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1075570..1076187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size619
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.2003448-UTR-S-ischiensis_contig8:1075569..10758661622817266.2003448-UTR-S-ischiensis_contig8:1075569..1075866Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1075570..1075866 +
1695740980.8034534-UTR-S-ischiensis_contig8:1075569..10758661695740980.8034534-UTR-S-ischiensis_contig8:1075569..1075866Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1075570..1075866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.2152624-CDS-S-ischiensis_contig8:1075866..10761871622817266.2152624-CDS-S-ischiensis_contig8:1075866..1076187Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1075867..1076187 +
1695740980.813417-CDS-S-ischiensis_contig8:1075866..10761871695740980.813417-CDS-S-ischiensis_contig8:1075866..1076187Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1075867..1076187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19381.1prot_S-ischiensis_contig8.19381.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1075867..1076187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19381.1

>prot_S-ischiensis_contig8.19381.1 ID=prot_S-ischiensis_contig8.19381.1|Name=mRNA_S-ischiensis_contig8.19381.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=107bp
MGSNSSSKFSASPYRRSGPPPPPGPPSSSPGPSVWGAGGESWAGRDSLFS
PRPFSCASCRSCSSKSRSKLKLSRDASPSVNAFAPSNFEARTSNMGLQPR
SWPSPMC
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mRNA from alignment at S-ischiensis_contig8:1075570..1076187+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19381.1 ID=mRNA_S-ischiensis_contig8.19381.1|Name=mRNA_S-ischiensis_contig8.19381.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=618bp|location=Sequence derived from alignment at S-ischiensis_contig8:1075570..1076187+ (Schizocladia ischiensis KU_0333)
CAGCTAGCCCGTCGGCTGCCAAACATGGTGGCTAGGGCCCCCGCCGACCG
CTCCATCGTCACCGCAGACTGCGCTATGGCGTCGCTCGCCCGGGACCGTA
CATCGCCGGGGAGAAGTGCCAGGAACCCGGCTGCGGCAGCGGCCCCAACC
GCGGCCTGTTGACCGTCCTTCTTGTCCCCTTGGGCTGCCGTGCCCTCGTC
GGGCCCAGGGCCCGTCTCCAGCCCCGTTGTGGGCGGTGCCGCGGTTCCCT
TAACTGCGAGCTCCACCGACGGGGAGCCCGTCCGTATTTCTGCCAAGATG
GGGTCGAACTCGTCCTCGAAATTTTCCGCCTCACCGTACCGCAGGTCTGG
CCCACCGCCGCCTCCTGGGCCGCCCTCTTCAAGCCCCGGCCCATCAGTCT
GGGGTGCCGGTGGTGAGAGTTGGGCAGGCAGAGACTCGCTGTTCTCGCCA
AGACCCTTCTCCTGCGCTTCCTGCCGCTCCTGTTCCTCCAAGAGCCGGTC
AAAGCTCAAGCTCTCCAGGGACGCCAGCCCATCAGTAAACGCTTTCGCCC
CCTCGAACTTCGAGGCCAGAACCTCAAACATGGGGCTCCAGCCCCGAAGC
TGGCCGTCACCGATGTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1075570..1076187+

>mRNA_S-ischiensis_contig8.19381.1 ID=mRNA_S-ischiensis_contig8.19381.1|Name=mRNA_S-ischiensis_contig8.19381.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=642bp|location=Sequence derived from alignment at S-ischiensis_contig8:1075570..1076187+ (Schizocladia ischiensis KU_0333)
ATGGGGTCGAACTCGTCCTCGAAATTTTCCGCCTCACCGTACCGCAGGTC
TGGCCCACCGCCGCCTCCTGGGCCGCCCTCTTCAAGCCCCGGCCCATCAG
TCTGGGGTGCCGGTGGTGAGAGTTGGGCAGGCAGAGACTCGCTGTTCTCG
CCAAGACCCTTCTCCTGCGCTTCCTGCCGCTCCTGTTCCTCCAAGAGCCG
GTCAAAGCTCAAGCTCTCCAGGGACGCCAGCCCATCAGTAAACGCTTTCG
CCCCCTCGAACTTCGAGGCCAGAACCTCAAACATGGGGCTCCAGCCCCGA
AGCTGGCCGTCACCGATGTGCATGGGGTCGAACTCGTCCTCGAAATTTTC
CGCCTCACCGTACCGCAGGTCTGGCCCACCGCCGCCTCCTGGGCCGCCCT
CTTCAAGCCCCGGCCCATCAGTCTGGGGTGCCGGTGGTGAGAGTTGGGCA
GGCAGAGACTCGCTGTTCTCGCCAAGACCCTTCTCCTGCGCTTCCTGCCG
CTCCTGTTCCTCCAAGAGCCGGTCAAAGCTCAAGCTCTCCAGGGACGCCA
GCCCATCAGTAAACGCTTTCGCCCCCTCGAACTTCGAGGCCAGAACCTCA
AACATGGGGCTCCAGCCCCGAAGCTGGCCGTCACCGATGTGC
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