mRNA_S-ischiensis_contig8.19379.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19379.1
Unique NamemRNA_S-ischiensis_contig8.19379.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19379.1 vs. uniprot
Match: A0A6H5J7D6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D6_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 2.170e-35
Identity = 112/340 (32.94%), Postives = 153/340 (45.00%), Query Frame = 1 
Query:   94 TMVTSESAMVDWGERNLIEDFGPNSDRRHGRHRDRERQAEAEARRPMDPRLLLW----PTVCDSDV-LFYNPHAMALALQPRPDAVTTTLDHFAGLLNLVLDGELSNRAAVLLCKALTDSCIVNAGPLHLD---VPERGGYLSA---------ALRQTWRLAIEDQRDE-EDMHTVGDLQTIASWFQAWGASDDARGELMLEVHGLADALPGDWLWVMDHMEMAGGAEGFDLNDEVATEEVEEKALGLPPEAWGLDDLRAALRAGPARDWFHPSGCFT-CAVPGPRRAATFRCALSRVPGAIYGCLRDLDGARWTPPTFRMYTTGDMEEVLGPDVVQRLR 1056
            T +TS     D GE  LI+DFGP       +  D E  A        D  +  W      V D    + ++P  MA  LQP    + + L     L+   L+ E      +L+ KA+TD+  V +  +  D   +   GG LS          ALRQ W  A+  +     + H+  DL   A+WFQAW A+           + + D LP +W WV++ +E    +EG  +  E+  E VE   LGLPPE W LDD++ +L       WF          + GP R +TFR     VPGA  GCL+D  G    PPTFRMYT GD+ +  G D V R R
Sbjct:   74 TQLTSSK---DEGEDRLIQDFGPGRRVHEAKDMD-EVGAAGRGTDCFDLSVKNWHRYVAAVGDRGRRVVFDPTEMARLLQPSGSGIDS-LWRMEKLIETTLEQETPGGETLLILKAVTDAFFVASRAVDDDSAAIWSYGGALSGDKERDLLVPALRQAWEHAVMHRNGSPNEWHSSVDLHVTAAWFQAWEAA-----------YQVEDVLPANWTWVLEQLESQETSEGPHIEGELVLEAVEGLQLGLPPENWSLDDVKRSLLLVSDERWFREGQAMVDLRLFGPTRESTFRRVFFDVPGAFDGCLKDRAGVALIPPTFRMYTAGDIFDAFGHDAVVRSR 397
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BLAST of mRNA_S-ischiensis_contig8.19379.1 vs. uniprot
Match: D7G704_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G704_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 2.310e-35
Identity = 111/344 (32.27%), Postives = 150/344 (43.60%), Query Frame = 1 
Query:  124 DWGERNLIEDFGPNSDRRHGR--HRDRERQAEAEARRPMDPRLLLWPTVC-DSDV----------------LFYNPHAMALALQPRPDAVTTTLDHFAGLLNLVLDGELSNRAAVLLCKALTDSCIVNAGPLH---LDVPERGG---------YLSAALRQTWRLAIEDQR-DEEDMHTVGDLQTIASWFQAWGASDDARGELMLEVHGLADALPGDWLWVMDHMEMAGGAEGFDLNDEVATEEVEEKALGLPPEAWGLDDLRAALRAGPARDWFHPSGCFT-CAVPGPRRAATFRCALSRVPGAIYGCLRDLDGARWTPPTFRMYTTGDMEEVLGPDVVQRLR 1056
            D GE  LI+DFGP      GR  H   +  A   A          W T C D  V                + ++P  MA  LQ     + + L     L+   L+        +L+ KA+TD+  V +  +     DV   GG          L  ALRQ W  A+  +  +  + H+  D    A+WFQAW AS           + + D LP DW WV++ +E    +EG  +  E+  E VEE  LGLPPE W L+D++ +L       WF          + GP R +TFR     VPGA+ GCL+D  G    PPTFRMYT GD+ +  G D V R R
Sbjct:   44 DEGEDRLIQDFGP------GRRVHEAEDMDAVGAAG---------WGTGCFDPSVKNLHRYAAAVGDHGRPVVFDPTEMARLLQASGSGIDS-LWRMEELIETTLERGTPGGETLLILKAVTDAFFVASRAVDDGSADVRSNGGAFNGDNERDLLVPALRQAWEHAVRHRNGNPNEWHSSVDFHVTAAWFQAWEAS-----------YQVEDVLPADWTWVLEQLESQETSEGPHIEGELELEAVEELQLGLPPENWSLNDVKRSLLLVSDESWFREGQAMVDLRLFGPTRESTFRRVFFDVPGAVDGCLKDRAGVALIPPTFRMYTAGDIFDAFGDDAVVRSR 360
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7D6_9PHAE2.170e-3532.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G704_ECTSI2.310e-3532.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1061826..1064599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011570.1
Exons2
Model size1058
Cds size960
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19379.1prot_S-ischiensis_contig8.19379.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1061826..1064503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817277.486896-CDS-S-ischiensis_contig8:1061825..10621561622817277.486896-CDS-S-ischiensis_contig8:1061825..1062156Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1061826..1062156 -
1695740989.3406436-CDS-S-ischiensis_contig8:1061825..10621561695740989.3406436-CDS-S-ischiensis_contig8:1061825..1062156Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1061826..1062156 -
1622817277.4985552-CDS-S-ischiensis_contig8:1063874..10645031622817277.4985552-CDS-S-ischiensis_contig8:1063874..1064503Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1063875..1064503 -
1695740989.3520339-CDS-S-ischiensis_contig8:1063874..10645031695740989.3520339-CDS-S-ischiensis_contig8:1063874..1064503Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1063875..1064503 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817277.5092454-UTR-S-ischiensis_contig8:1064503..10645991622817277.5092454-UTR-S-ischiensis_contig8:1064503..1064599Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1064504..1064599 -
1695740989.3653026-UTR-S-ischiensis_contig8:1064503..10645991695740989.3653026-UTR-S-ischiensis_contig8:1064503..1064599Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1064504..1064599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19379.1

>prot_S-ischiensis_contig8.19379.1 ID=prot_S-ischiensis_contig8.19379.1|Name=mRNA_S-ischiensis_contig8.19379.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=320bp
MVTSESAMVDWGERNLIEDFGPNSDRRHGRHRDRERQAEAEARRPMDPRL
LLWPTVCDSDVLFYNPHAMALALQPRPDAVTTTLDHFAGLLNLVLDGELS
NRAAVLLCKALTDSCIVNAGPLHLDVPERGGYLSAALRQTWRLAIEDQRD
EEDMHTVGDLQTIASWFQAWGASDDARGELMLEVHGLADALPGDWLWVMD
HMEMAGGAEGFDLNDEVATEEVEEKALGLPPEAWGLDDLRAALRAGPARD
WFHPSGCFTCAVPGPRRAATFRCALSRVPGAIYGCLRDLDGARWTPPTFR
MYTTGDMEEVLGPDVVQRLR
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mRNA from alignment at S-ischiensis_contig8:1061826..1064599-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19379.1 ID=mRNA_S-ischiensis_contig8.19379.1|Name=mRNA_S-ischiensis_contig8.19379.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2774bp|location=Sequence derived from alignment at S-ischiensis_contig8:1061826..1064599- (Schizocladia ischiensis KU_0333)
CCTGGCTCTCTGCGCACACCTGGCTCTCGCAGCCGCCGTCGGCCGTAGAG
CTACAGCTGTAGAACGCGTTCGGCCATTCATCACCTGGCGGTGACGATGG
TGACCTCCGAGTCGGCGATGGTCGATTGGGGAGAGAGGAATCTGATTGAG
GATTTCGGTCCCAACAGCGACAGGAGGCACGGGAGGCACCGCGACCGCGA
GCGGCAGGCAGAGGCGGAGGCCCGGAGGCCCATGGACCCGCGCCTGCTGC
TGTGGCCGACAGTATGCGATTCGGATGTCTTGTTCTATAACCCTCACGCG
ATGGCCCTGGCGTTGCAGCCGCGGCCCGACGCGGTGACGACAACACTAGA
CCATTTCGCGGGCCTTCTCAACCTCGTCCTCGACGGCGAGCTGAGCAACC
GGGCCGCCGTGCTGCTGTGCAAGGCGCTCACGGACTCCTGCATCGTAAAC
GCGGGCCCTCTCCACCTCGACGTGCCCGAGCGCGGTGGGTACCTGAGCGC
GGCGCTACGCCAGACGTGGAGGCTGGCTATCGAGGATCAGAGGGACGAGG
AAGACATGCACACCGTCGGGGACCTCCAGACCATTGCGTCGTGGTTCCAG
GCGTGGGGAGCCTCGGACGACGCACGCGGTGAGCTGATGCTGGAGGTCCA
CGGCCTCGCTGACGCCCTGCCCGGGGACTGGTTGTGGGTGATGGACCACA
TGGAGATGGCGGGGGGGGCGGAAGGGTGAGTTGTGAGCATTACGTTAAGG
CGTGCGGTTGTTGTGTTGTGTCGTTTGTGTTCGTCTATTATAAGTGTGTT
CTGTCACGGGCTGCTGCTGTGTCCCGTTTCTCGAATTATTTGAGGTGCCT
GAGTACTGTAGTGCAGGCTTCACTGTGTCGGTTGTGTGCGTGTATTGTAA
GTGTGTTCTGTCACGGGCCGCTGTGGTCCACTTCTCAAATTGTTTGAGGT
GCCTTGAGTGCTGTAGTGCTGAGCTTCACTTTGTAGTTTACTTATTGGAG
TGGACTTTGGGTGCTTGTAACCCGAAGTGCAGTAGGAGTATAGGATTGCC
TGCGCTTTTCTCGAACTATTTGGGGTGCCTTGAGTACTGCAGTGCAGCGC
GCCACTTTGTAGCATACTTATTCGAGTGGAATTTGGGAGATTGTAACCCG
AAGTACAGTATGTTAGGAGTATAGGATTGCCTAGCCTTGCAGTTTGTCCA
CGTAAACGTGCAGTCGTGTCCGACAGGTGGCCCCGTCCTGTGCCTTCCAC
CGGCCAGCGTCCCGGCACGCTACTTGCTGGACCAGGGTTGGCAGTTACAA
CTACTTAGAGGTCAATTACTCATAGGGCCTAGTTAGACTTCATTTTAGGT
CTAACTACCCCTAAAAACCTCTAGTTAAGGGCCTAACAGGGCACCACTTA
GGGGTTCAGTGCCGACCCTGTGCTGGACCGCCGGCCAGTCCCGTTAGGCA
TCCTTCAGCCATGGCGTGATTGCAGTAGTCTACTGCTGTGAGCACTTCCC
AGCACATGTCACCTGCTTGACCCTTAACCCTCGGAGGTGTCGACTGTTAG
CAGACAGGCCTGTAGCAGTAGAGGGCAATTGCAGCGTACTACAAGTGCGT
TGCTGCCACAGTACTGAGTGCTTTGAAGTACTAGTATTGGTGTACTGCGA
AGTGCTGTACTGTACTGTAGTGCTCCCAAGTACTTCCAAGTACTTCCAGA
AGAACTACAGTACCGTAAATCGAGCTCCAGCACTACTGTACGTGCCGTAG
CACTGTACCACCTTGGTAGTGCAGGGCGAGCACTCATATGGTATGAGCAG
GGAATTCAACAGGGCGAGGTGCGGGCCATGTCAATAAAGACCTCAGCAGT
GGCCCTTCCTTAGCCCGCCAGGGAAGGATTGCGTTCTCTAGGGTAGTAGG
TAAACCGTCCCATTGTTTGACACGCGTGATCCTAAAACACTTACGAGTAC
ACCCCCCCCCGTGTCCCGTAGGGCCTCCCCGGAGGGATGCGCGGTCAATA
GTCACACGGCCATGGGAAGCAACTGATGACCCCCTCCCTCCCTTCCCACT
GCCGCTATGCAACTCCACACACAACCCCCCTGTGCACATACGGTGGGCTG
GGGTGTTCCCACGGGGGAACCACGCGGGGTCCTCTCGGTTGACTTTGTCG
GTCGGGTCGCTGGGCGGGGCTGGTTGGTTCGCGCCAGTGATGGAATATCT
AAGCAAATCAACCTATTTATCGACAGTGCTGATCTAGTTTGAGTGGTAGA
TAAGCGGCGGGTTCCACGCCCCGTGCCAAAAGGCTCGTCCCTGATCTATC
TATCGATAGTCAATATTTGATAGCTTGGCCCACACTAAAAATCCAAGTGG
TTAGTAATGCCACCCACAAAATCAGTCGATCGGGCCCGATAGCTATCCGC
TGATCGAAATTTCCATCACTGGTTCGCGCACCGCTACTTACAGCTTCGAC
TTGAACGACGAAGTGGCCACCGAAGAGGTCGAAGAAAAGGCCCTGGGCCT
GCCCCCGGAGGCCTGGGGCCTGGACGACCTCCGGGCCGCGCTGCGGGCCG
GCCCGGCCCGGGACTGGTTCCACCCGTCCGGCTGCTTCACCTGCGCCGTC
CCCGGGCCCCGCCGCGCCGCCACCTTCCGCTGCGCCCTCTCCCGCGTCCC
CGGGGCCATCTACGGGTGCCTCCGGGACCTGGACGGCGCCCGCTGGACGC
CCCCCACCTTCCGCATGTACACCACGGGGGACATGGAGGAGGTGCTGGGG
CCGGACGTGGTGCAGCGGCTGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1061826..1064599-

>mRNA_S-ischiensis_contig8.19379.1 ID=mRNA_S-ischiensis_contig8.19379.1|Name=mRNA_S-ischiensis_contig8.19379.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1920bp|location=Sequence derived from alignment at S-ischiensis_contig8:1061826..1064599- (Schizocladia ischiensis KU_0333)
ATGGTGACCTCCGAGTCGGCGATGGTCGATTGGGGAGAGAGGAATCTGAT
TGAGGATTTCGGTCCCAACAGCGACAGGAGGCACGGGAGGCACCGCGACC
GCGAGCGGCAGGCAGAGGCGGAGGCCCGGAGGCCCATGGACCCGCGCCTG
CTGCTGTGGCCGACAGTATGCGATTCGGATGTCTTGTTCTATAACCCTCA
CGCGATGGCCCTGGCGTTGCAGCCGCGGCCCGACGCGGTGACGACAACAC
TAGACCATTTCGCGGGCCTTCTCAACCTCGTCCTCGACGGCGAGCTGAGC
AACCGGGCCGCCGTGCTGCTGTGCAAGGCGCTCACGGACTCCTGCATCGT
AAACGCGGGCCCTCTCCACCTCGACGTGCCCGAGCGCGGTGGGTACCTGA
GCGCGGCGCTACGCCAGACGTGGAGGCTGGCTATCGAGGATCAGAGGGAC
GAGGAAGACATGCACACCGTCGGGGACCTCCAGACCATTGCGTCGTGGTT
CCAGGCGTGGGGAGCCTCGGACGACGCACGCGGTGAGCTGATGCTGGAGG
TCCACGGCCTCGCTGACGCCCTGCCCGGGGACTGGTTGTGGGTGATGGAC
CACATGGAGATGGCGGGGGGGGCGGAAGGATGGTGACCTCCGAGTCGGCG
ATGGTCGATTGGGGAGAGAGGAATCTGATTGAGGATTTCGGTCCCAACAG
CGACAGGAGGCACGGGAGGCACCGCGACCGCGAGCGGCAGGCAGAGGCGG
AGGCCCGGAGGCCCATGGACCCGCGCCTGCTGCTGTGGCCGACAGTATGC
GATTCGGATGTCTTGTTCTATAACCCTCACGCGATGGCCCTGGCGTTGCA
GCCGCGGCCCGACGCGGTGACGACAACACTAGACCATTTCGCGGGCCTTC
TCAACCTCGTCCTCGACGGCGAGCTGAGCAACCGGGCCGCCGTGCTGCTG
TGCAAGGCGCTCACGGACTCCTGCATCGTAAACGCGGGCCCTCTCCACCT
CGACGTGCCCGAGCGCGGTGGGTACCTGAGCGCGGCGCTACGCCAGACGT
GGAGGCTGGCTATCGAGGATCAGAGGGACGAGGAAGACATGCACACCGTC
GGGGACCTCCAGACCATTGCGTCGTGGTTCCAGGCGTGGGGAGCCTCGGA
CGACGCACGCGGTGAGCTGATGCTGGAGGTCCACGGCCTCGCTGACGCCC
TGCCCGGGGACTGGTTGTGGGTGATGGACCACATGGAGATGGCGGGGGGG
GCGGAAGGCTTCGACTTGAACGACGAAGTGGCCACCGAAGAGGTCGAAGA
AAAGGCCCTGGGCCTGCCCCCGGAGGCCTGGGGCCTGGACGACCTCCGGG
CCGCGCTGCGGGCCGGCCCGGCCCGGGACTGGTTCCACCCGTCCGGCTGC
TTCACCTGCGCCGTCCCCGGGCCCCGCCGCGCCGCCACCTTCCGCTGCGC
CCTCTCCCGCGTCCCCGGGGCCATCTACGGGTGCCTCCGGGACCTGGACG
GCGCCCGCTGGACGCCCCCCACCTTCCGCATGTACACCACGGGGGACATG
GAGGAGGTGCTGGGGCCGGACGTGGTGCAGCGGCTGCGGCTTCGACTTGA
ACGACGAAGTGGCCACCGAAGAGGTCGAAGAAAAGGCCCTGGGCCTGCCC
CCGGAGGCCTGGGGCCTGGACGACCTCCGGGCCGCGCTGCGGGCCGGCCC
GGCCCGGGACTGGTTCCACCCGTCCGGCTGCTTCACCTGCGCCGTCCCCG
GGCCCCGCCGCGCCGCCACCTTCCGCTGCGCCCTCTCCCGCGTCCCCGGG
GCCATCTACGGGTGCCTCCGGGACCTGGACGGCGCCCGCTGGACGCCCCC
CACCTTCCGCATGTACACCACGGGGGACATGGAGGAGGTGCTGGGGCCGG
ACGTGGTGCAGCGGCTGCGG
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