mRNA_S-ischiensis_contig8.19287.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A6H5K8R4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R4_9PHAE) HSP 1 Score: 264 bits (675), Expect = 7.890e-77 Identity = 121/188 (64.36%), Postives = 144/188 (76.60%), Query Frame = 1
Query: 79 ECGAPECIMCHERCNKTVGYLGLAARSAVLARGVEANEHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVLGVERRGRRVRTVWPVAGWASVHSTEGYPILVPVQSKAFRRWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVPHVPP 642
E G+PECIMCHER +GYLGLA RS VL GV N H +L RQ ++VG++GCQ+R G+D+ SEKV PPG TCEVL E+ GRRVR V P GWAS + +G +L P++++AFRRWGRQRLH+G CGHAVH CWD+YF SLLGR+ ANQ FDGRMSVDVNR EFFCPLCKSLSN L+ H+PP
Sbjct: 1275 EEGSPECIMCHERSGSLMGYLGLAQRSLVLGTGVAGNPHRGLLRRQMLIVGNYGCQMRRGIDVTSEKVKFFPPGGTCEVLVREQVGRRVRCVAPAVGWASTRTQDGSVVLDPLETQAFRRWGRQRLHVGLCGHAVHFSCWDAYFQSLLGRSNANQTFDGRMSVDVNRAEFFCPLCKSLSNTLIAHIPP 1462
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A4D9D1X7_9STRA (E3 ubiquitin-protein ligase n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1X7_9STRA) HSP 1 Score: 168 bits (426), Expect = 1.700e-43 Identity = 87/201 (43.28%), Postives = 125/201 (62.19%), Query Frame = 1
Query: 79 ECGAPECIMCHERCNKTVGYLGLAARSAVLARGVEANEHHEVLSRQFMVVGSHG-CQVRAGLDLDSEKVALLPPGRTCEVLGVERRGRRVRTVWPVAGWASVHSTEGYPILVPVQSKAFRRWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVPHVPPGMHPERLAAAGQ 678
E GAP C+ CHER + Y+G A RS LA + + H L++++ V SH C VR+G DL S +V L GR ++ E+RGRR+R P GW S S++ + ++ P+ F++WG+ R+ + CGH H DCWDS++AS+L + + DGR ++DV R EF CPLCKSLSN+LVPH+PP + + AAAG+
Sbjct: 1369 EAGAPACLYCHERTGSALAYIGFAQRSNALAHAIADSPSHARLAQRYRV--SHRECLVRSGPDLGSAEVQRL--GRGTFLVVEEKRGRRLRVSHPTHGWISEFSSDRHRLVEPMSPYCFQQWGKTRVLVTLCGHVCHQDCWDSFYASVLQEMISEERVDGRHAIDVARREFLCPLCKSLSNVLVPHIPPDL--DVSAAAGE 1563
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A836CB31_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB31_9STRA) HSP 1 Score: 129 bits (324), Expect = 6.370e-30 Identity = 87/273 (31.87%), Postives = 116/273 (42.49%), Query Frame = 1
Query: 58 AAADLARECGAPECIMCHERCNKTVGYLGLAARSAVLARGVEANEHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVLGVERRGRRVRTVWPVAGWASVHSTEGYPILVPVQSKAFRRWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQA--------------------------------------------------------------------FDGRMSVDVNRTEFFCPLCKSLSNMLVPHVPPGMHPERLAAA 672
A A LARE GAP CI+CHE N+ + Y +A RS V++R + HE+L+RQF VVG+ GCQ+R ++L+S ++ LLP R EV VE+R WGR RLH+G CGHA H C ++Y A+L R NQ FDGR++++V EF CPLCK+L N+LVPH+PP + LA A
Sbjct: 1277 AEAPLAREKGAPVCIVCHESVNRNMCYGAVAQRSTVMSRAIGCAPEHELLNRQFRVVGNQGCQLRESVELNSRRLGLLP--RNAEVTIVEQR-----------------------------------WGRLRLHVGLCGHAAHAHCMEAYRATLRERHNMNQXXXXXXXXXXXXXXVRHPVVQLKFMLWLTVSTCCVQALLEXXXXXXXXXXXXNQAYXXXXXXXXXXXXXFDGRVAINVPGGEFMCPLCKNLGNVLVPHIPPALRASALAEA 1512
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A7S2WN15_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WN15_9STRA) HSP 1 Score: 117 bits (292), Expect = 4.450e-27 Identity = 75/203 (36.95%), Postives = 105/203 (51.72%), Query Frame = 1
Query: 97 CIMCHERC-------NKTVGYLGLAARSAVLARGVEANEHH---EVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEV--------LGVERRGRRVRTVWP-----VAGWASVHSTEGYPILVPVQSKAFR--RWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVP 630
CI+C +C N +GYLG RS V + + LSR F VVG GCQ+R D+DS +VA L G + G+ R V+ V + GWA++ S++GY IL P+ ++ RWG R L CGH HL C +++ SL R+A +Q +DGR + +++ EF CPLCK LSN+LVP
Sbjct: 75 CIIC--KCDDADGENNGPLGYLGHVQRSRTAHLSVSGTSNKTTIDKLSRSFRVVGEKGCQLRQHEDMDSSEVACLSRGSIVTLKEKSIMPKFGLLSRRVFVQYVSQTDGKNIEGWANIQSSQGYIILSPLSPMCYKNTRWGCTRPILKLCGHTAHLHCVETHCLSLHQRSAGDQPYDGRFAANIDDGEFLCPLCKQLSNVLVP 275
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A7S2U9T5_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9T5_9STRA) HSP 1 Score: 119 bits (297), Expect = 2.460e-26 Identity = 86/233 (36.91%), Postives = 117/233 (50.21%), Query Frame = 1
Query: 97 CIMCHERC-------NKTVGYLGLAARS------AVLARGVEANEHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVLG------VERRGRRVRTVW-----PVAGWASVHSTEGYPILVPVQSKAFR--RWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVPHVPPGMHPERLAAAGQGAPLPLSSPRSSS 717
CI+C RC N +G+LG RS AV +N+ + L+ + VVG GCQ+RA +DS V +P G +V + RRV + P GWASV S++GY IL P+ ++ RWG R + CGHA HL C +++ SL RAA Q +DGR + +++ EF CPLCK LSN+LVP A + A LPLSS S+S
Sbjct: 2120 CIIC--RCDDADGENNGPLGFLGHVQRSRSLQIRAVNESRTSSNDSEQNLTNAYRVVGDRGCQLRATEAMDSAAVVCVPTGSIVKVSRSKILPKYDILSRRVFVQYVLNGRPFEGWASVQSSQGYVILSPLVDICYQNSRWGSTRPIVKQCGHAAHLRCVETHCLSLHQRAAGEQPYDGRFAANIDDGEFLCPLCKQLSNVLVPRY--SHRAGAKAPSSDTATLPLSSVTSTS 2348
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: B8C846_THAPS (E3 ubiquitin-protein ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C846_THAPS) HSP 1 Score: 119 bits (297), Expect = 2.470e-26 Identity = 88/245 (35.92%), Postives = 117/245 (47.76%), Query Frame = 1
Query: 97 CIMCHERC------NKTVGYLGLAARSAVL-------------ARGVEANEHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVL--------GVERRGRRVRTVWP---------VAGWASVHSTEGYPILVPVQSKAFR--RWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVPHVPPGMHPERLAAAGQGAPLPLSSPRSSS 717
CI+C +C N +GYLG RS V+ A G++ N + VVG GCQ+R+ +DS VA LP G EVL G+ R V+ + P V GWAS+ S +GY IL P+ S + RWG R + CGHA H C +++ SL R Q+FDGR S ++ EF CPLCK LSN+L+P E A +PL L++P SSS
Sbjct: 2304 CIIC--KCDXXXGGNGPIGYLGHVQRSRVMQLESKALLAKYGCADGLDLNN-------VYRVVGDKGCQLRSTESMDSAPVAFLPQGSIVEVLQSKISPQLGLMSRRVLVKHLAPEKQNVSDQTVQGWASMQSWQGYIILSPLSSLCYTNTRWGSTRPIIRQCGHAAHFKCAEAHCLSLFQRNENQQSFDGRFSANIKEGEFLCPLCKQLSNILIP--------EDNADVSSTSPLALTTPESSS 2531
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A7S2L6M7_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L6M7_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.820e-25 Identity = 79/207 (38.16%), Postives = 102/207 (49.28%), Query Frame = 1
Query: 97 CIMCHERC------NKTVGYLGLAARSAVLAR------GVEANEHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVL--------GVERRGRRVRTVWP-------VAGWASVHSTEGYPILVPVQSKAFR--RWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVP 630
CI+C +C N +GYLG RS V G + L+ + V G GCQ+R+ + S VA LP G EVL G+ R VR V GWAS+ S GY IL P+ + + RWG R + CGHA HL C DS+ SL RAA+NQ +DGR S ++ EF CPLCK LSN+++P
Sbjct: 922 CIIC--KCDDADGDNGPMGYLGHVQRSRVAQLSSKSILGQTGASGSDDLNNFYRVAGGKGCQLRSTESMGSAPVAFLPLGSIVEVLQSKISPQLGLLSRRVYVRHVTEHQNGSEAAQGWASIQSWHGYTILSPLNTLCYTNTRWGPTRPIIRQCGHAAHLKCVDSHCLSLHQRAASNQPYDGRFSANIEDGEFLCPLCKQLSNIVIP 1126
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A7S1VKD5_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VKD5_9STRA) HSP 1 Score: 112 bits (279), Expect = 5.570e-24 Identity = 77/209 (36.84%), Postives = 104/209 (49.76%), Query Frame = 1
Query: 97 CIMCHERCNKT-------VGYLGLAARSAVLARGVEAN-EHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVLG---------VERR------------GRRVRTVWPVAGWASVHSTEGYPILVPVQS--KAFRRWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVP 630
CI+C RC+ T +GYLG RS A E + L + V G GCQ+R +DSE + LP G V + RR G+++ T GWASV S+EGY IL P+ + A RWG R + CGHA HL+C +++ SL RAA Q +DGR + +++ EF CPLCK LSN+L+P
Sbjct: 731 CIIC--RCDDTDGENNGPLGYLGHVQRSRYSQMRCSAEIEQDDRLFSTYRVSGHRGCQLRKTEAMDSEPLVCLPTGSLVSVGNTTVSDNYDILSRRVFVRHTEKAQGTGKQIVT----EGWASVQSSEGYVILSPLATLCSASSRWGSTRPIIRQCGHAAHLECVETHTLSLHQRAAGEQPYDGRFAANIDDGEFLCPLCKQLSNVLLP 933
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A7S1VIH2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VIH2_9STRA) HSP 1 Score: 112 bits (279), Expect = 5.780e-24 Identity = 77/209 (36.84%), Postives = 104/209 (49.76%), Query Frame = 1
Query: 97 CIMCHERCNKT-------VGYLGLAARSAVLARGVEAN-EHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVLG---------VERR------------GRRVRTVWPVAGWASVHSTEGYPILVPVQS--KAFRRWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVP 630
CI+C RC+ T +GYLG RS A E + L + V G GCQ+R +DSE + LP G V + RR G+++ T GWASV S+EGY IL P+ + A RWG R + CGHA HL+C +++ SL RAA Q +DGR + +++ EF CPLCK LSN+L+P
Sbjct: 1521 CIIC--RCDDTDGENNGPLGYLGHVQRSRYSQMRCSAEIEQDDRLFSTYRVSGHRGCQLRKTEAMDSEPLVCLPTGSLVSVGNTTVSDNYDILSRRVFVRHTEKAQGTGKQIVT----EGWASVQSSEGYVILSPLATLCSASSRWGSTRPIIRQCGHAAHLECVETHTLSLHQRAAGEQPYDGRFAANIDDGEFLCPLCKQLSNVLLP 1723
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A7S3GQQ7_9STRA (E3 ubiquitin-protein ligase (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQQ7_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.020e-23 Identity = 75/208 (36.06%), Postives = 96/208 (46.15%), Query Frame = 1
Query: 67 DLARECGAPECIMCHERCNKTVGYLGLAARSAVLARGVEANEHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVLGVERR--GRRVRTVWPVAGWASVHSTE-------GYPILVPVQSKA-----------FRRWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVP 630
DL E PECI+C E+ N VGYL S VL + E L F VV G V A D+ + +LP G E + VE R GR ++ P GW S++ G P +P SK F + G RLH CGH +H DCWD +FA+ R N ++VDV R E CPLCKS++N L+P
Sbjct: 764 DLYAEETVPECIICREKTNSPVGYLCFLQPSNVLRNAHLTSPDSEELMNVFRVVAFAGVNVHAEPQDDAAVLHILPQG---EHIHVENRDGGRWLKLRAPHTGWCSLYCNADDAPLAAGQPAPLPGNSKTIVNLHPVAELQFAKHGGTRLHASACGHTMHFDCWDMFFAANYARYTNNHRSAELLAVDVERGESLCPLCKSVTNTLLP 968 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19287.1 >prot_S-ischiensis_contig8.19287.1 ID=prot_S-ischiensis_contig8.19287.1|Name=mRNA_S-ischiensis_contig8.19287.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=283bp PRRRSDARLRQPGKGRAARAAADLARECGAPECIMCHERCNKTVGYLGLAback to top mRNA from alignment at S-ischiensis_contig8:354325..357481- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19287.1 ID=mRNA_S-ischiensis_contig8.19287.1|Name=mRNA_S-ischiensis_contig8.19287.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3157bp|location=Sequence derived from alignment at S-ischiensis_contig8:354325..357481- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:354325..357481- >mRNA_S-ischiensis_contig8.19287.1 ID=mRNA_S-ischiensis_contig8.19287.1|Name=mRNA_S-ischiensis_contig8.19287.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1698bp|location=Sequence derived from alignment at S-ischiensis_contig8:354325..357481- (Schizocladia ischiensis KU_0333)back to top |