mRNA_S-ischiensis_contig8.19287.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19287.1
Unique NamemRNA_S-ischiensis_contig8.19287.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A6H5K8R4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R4_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 7.890e-77
Identity = 121/188 (64.36%), Postives = 144/188 (76.60%), Query Frame = 1
Query:   79 ECGAPECIMCHERCNKTVGYLGLAARSAVLARGVEANEHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVLGVERRGRRVRTVWPVAGWASVHSTEGYPILVPVQSKAFRRWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVPHVPP 642
            E G+PECIMCHER    +GYLGLA RS VL  GV  N H  +L RQ ++VG++GCQ+R G+D+ SEKV   PPG TCEVL  E+ GRRVR V P  GWAS  + +G  +L P++++AFRRWGRQRLH+G CGHAVH  CWD+YF SLLGR+ ANQ FDGRMSVDVNR EFFCPLCKSLSN L+ H+PP
Sbjct: 1275 EEGSPECIMCHERSGSLMGYLGLAQRSLVLGTGVAGNPHRGLLRRQMLIVGNYGCQMRRGIDVTSEKVKFFPPGGTCEVLVREQVGRRVRCVAPAVGWASTRTQDGSVVLDPLETQAFRRWGRQRLHVGLCGHAVHFSCWDAYFQSLLGRSNANQTFDGRMSVDVNRAEFFCPLCKSLSNTLIAHIPP 1462          
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A4D9D1X7_9STRA (E3 ubiquitin-protein ligase n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1X7_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.700e-43
Identity = 87/201 (43.28%), Postives = 125/201 (62.19%), Query Frame = 1
Query:   79 ECGAPECIMCHERCNKTVGYLGLAARSAVLARGVEANEHHEVLSRQFMVVGSHG-CQVRAGLDLDSEKVALLPPGRTCEVLGVERRGRRVRTVWPVAGWASVHSTEGYPILVPVQSKAFRRWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVPHVPPGMHPERLAAAGQ 678
            E GAP C+ CHER    + Y+G A RS  LA  +  +  H  L++++ V  SH  C VR+G DL S +V  L  GR   ++  E+RGRR+R   P  GW S  S++ + ++ P+    F++WG+ R+ +  CGH  H DCWDS++AS+L    + +  DGR ++DV R EF CPLCKSLSN+LVPH+PP +  +  AAAG+
Sbjct: 1369 EAGAPACLYCHERTGSALAYIGFAQRSNALAHAIADSPSHARLAQRYRV--SHRECLVRSGPDLGSAEVQRL--GRGTFLVVEEKRGRRLRVSHPTHGWISEFSSDRHRLVEPMSPYCFQQWGKTRVLVTLCGHVCHQDCWDSFYASVLQEMISEERVDGRHAIDVARREFLCPLCKSLSNVLVPHIPPDL--DVSAAAGE 1563          
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A836CB31_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB31_9STRA)

HSP 1 Score: 129 bits (324), Expect = 6.370e-30
Identity = 87/273 (31.87%), Postives = 116/273 (42.49%), Query Frame = 1
Query:   58 AAADLARECGAPECIMCHERCNKTVGYLGLAARSAVLARGVEANEHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVLGVERRGRRVRTVWPVAGWASVHSTEGYPILVPVQSKAFRRWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQA--------------------------------------------------------------------FDGRMSVDVNRTEFFCPLCKSLSNMLVPHVPPGMHPERLAAA 672
            A A LARE GAP CI+CHE  N+ + Y  +A RS V++R +     HE+L+RQF VVG+ GCQ+R  ++L+S ++ LLP  R  EV  VE+R                                   WGR RLH+G CGHA H  C ++Y A+L  R   NQ                                                                     FDGR++++V   EF CPLCK+L N+LVPH+PP +    LA A
Sbjct: 1277 AEAPLAREKGAPVCIVCHESVNRNMCYGAVAQRSTVMSRAIGCAPEHELLNRQFRVVGNQGCQLRESVELNSRRLGLLP--RNAEVTIVEQR-----------------------------------WGRLRLHVGLCGHAAHAHCMEAYRATLRERHNMNQXXXXXXXXXXXXXXVRHPVVQLKFMLWLTVSTCCVQALLEXXXXXXXXXXXXNQAYXXXXXXXXXXXXXFDGRVAINVPGGEFMCPLCKNLGNVLVPHIPPALRASALAEA 1512          
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A7S2WN15_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WN15_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.450e-27
Identity = 75/203 (36.95%), Postives = 105/203 (51.72%), Query Frame = 1
Query:   97 CIMCHERC-------NKTVGYLGLAARSAVLARGVEANEHH---EVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEV--------LGVERRGRRVRTVWP-----VAGWASVHSTEGYPILVPVQSKAFR--RWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVP 630
            CI+C  +C       N  +GYLG   RS      V    +    + LSR F VVG  GCQ+R   D+DS +VA L  G    +         G+  R   V+ V       + GWA++ S++GY IL P+    ++  RWG  R  L  CGH  HL C +++  SL  R+A +Q +DGR + +++  EF CPLCK LSN+LVP
Sbjct:   75 CIIC--KCDDADGENNGPLGYLGHVQRSRTAHLSVSGTSNKTTIDKLSRSFRVVGEKGCQLRQHEDMDSSEVACLSRGSIVTLKEKSIMPKFGLLSRRVFVQYVSQTDGKNIEGWANIQSSQGYIILSPLSPMCYKNTRWGCTRPILKLCGHTAHLHCVETHCLSLHQRSAGDQPYDGRFAANIDDGEFLCPLCKQLSNVLVP 275          
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A7S2U9T5_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9T5_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.460e-26
Identity = 86/233 (36.91%), Postives = 117/233 (50.21%), Query Frame = 1
Query:   97 CIMCHERC-------NKTVGYLGLAARS------AVLARGVEANEHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVLG------VERRGRRVRTVW-----PVAGWASVHSTEGYPILVPVQSKAFR--RWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVPHVPPGMHPERLAAAGQGAPLPLSSPRSSS 717
            CI+C  RC       N  +G+LG   RS      AV      +N+  + L+  + VVG  GCQ+RA   +DS  V  +P G   +V         +   RRV   +     P  GWASV S++GY IL P+    ++  RWG  R  +  CGHA HL C +++  SL  RAA  Q +DGR + +++  EF CPLCK LSN+LVP           A +   A LPLSS  S+S
Sbjct: 2120 CIIC--RCDDADGENNGPLGFLGHVQRSRSLQIRAVNESRTSSNDSEQNLTNAYRVVGDRGCQLRATEAMDSAAVVCVPTGSIVKVSRSKILPKYDILSRRVFVQYVLNGRPFEGWASVQSSQGYVILSPLVDICYQNSRWGSTRPIVKQCGHAAHLRCVETHCLSLHQRAAGEQPYDGRFAANIDDGEFLCPLCKQLSNVLVPRY--SHRAGAKAPSSDTATLPLSSVTSTS 2348          
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: B8C846_THAPS (E3 ubiquitin-protein ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C846_THAPS)

HSP 1 Score: 119 bits (297), Expect = 2.470e-26
Identity = 88/245 (35.92%), Postives = 117/245 (47.76%), Query Frame = 1
Query:   97 CIMCHERC------NKTVGYLGLAARSAVL-------------ARGVEANEHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVL--------GVERRGRRVRTVWP---------VAGWASVHSTEGYPILVPVQSKAFR--RWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVPHVPPGMHPERLAAAGQGAPLPLSSPRSSS 717
            CI+C  +C      N  +GYLG   RS V+             A G++ N         + VVG  GCQ+R+   +DS  VA LP G   EVL        G+  R   V+ + P         V GWAS+ S +GY IL P+ S  +   RWG  R  +  CGHA H  C +++  SL  R    Q+FDGR S ++   EF CPLCK LSN+L+P        E  A     +PL L++P SSS
Sbjct: 2304 CIIC--KCDXXXGGNGPIGYLGHVQRSRVMQLESKALLAKYGCADGLDLNN-------VYRVVGDKGCQLRSTESMDSAPVAFLPQGSIVEVLQSKISPQLGLMSRRVLVKHLAPEKQNVSDQTVQGWASMQSWQGYIILSPLSSLCYTNTRWGSTRPIIRQCGHAAHFKCAEAHCLSLFQRNENQQSFDGRFSANIKEGEFLCPLCKQLSNILIP--------EDNADVSSTSPLALTTPESSS 2531          
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A7S2L6M7_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L6M7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.820e-25
Identity = 79/207 (38.16%), Postives = 102/207 (49.28%), Query Frame = 1
Query:   97 CIMCHERC------NKTVGYLGLAARSAVLAR------GVEANEHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVL--------GVERRGRRVRTVWP-------VAGWASVHSTEGYPILVPVQSKAFR--RWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVP 630
            CI+C  +C      N  +GYLG   RS V         G       + L+  + V G  GCQ+R+   + S  VA LP G   EVL        G+  R   VR V           GWAS+ S  GY IL P+ +  +   RWG  R  +  CGHA HL C DS+  SL  RAA+NQ +DGR S ++   EF CPLCK LSN+++P
Sbjct:  922 CIIC--KCDDADGDNGPMGYLGHVQRSRVAQLSSKSILGQTGASGSDDLNNFYRVAGGKGCQLRSTESMGSAPVAFLPLGSIVEVLQSKISPQLGLLSRRVYVRHVTEHQNGSEAAQGWASIQSWHGYTILSPLNTLCYTNTRWGPTRPIIRQCGHAAHLKCVDSHCLSLHQRAASNQPYDGRFSANIEDGEFLCPLCKQLSNIVIP 1126          
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A7S1VKD5_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VKD5_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.570e-24
Identity = 77/209 (36.84%), Postives = 104/209 (49.76%), Query Frame = 1
Query:   97 CIMCHERCNKT-------VGYLGLAARSAVLARGVEAN-EHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVLG---------VERR------------GRRVRTVWPVAGWASVHSTEGYPILVPVQS--KAFRRWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVP 630
            CI+C  RC+ T       +GYLG   RS        A  E  + L   + V G  GCQ+R    +DSE +  LP G    V           + RR            G+++ T     GWASV S+EGY IL P+ +   A  RWG  R  +  CGHA HL+C +++  SL  RAA  Q +DGR + +++  EF CPLCK LSN+L+P
Sbjct:  731 CIIC--RCDDTDGENNGPLGYLGHVQRSRYSQMRCSAEIEQDDRLFSTYRVSGHRGCQLRKTEAMDSEPLVCLPTGSLVSVGNTTVSDNYDILSRRVFVRHTEKAQGTGKQIVT----EGWASVQSSEGYVILSPLATLCSASSRWGSTRPIIRQCGHAAHLECVETHTLSLHQRAAGEQPYDGRFAANIDDGEFLCPLCKQLSNVLLP 933          
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A7S1VIH2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VIH2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.780e-24
Identity = 77/209 (36.84%), Postives = 104/209 (49.76%), Query Frame = 1
Query:   97 CIMCHERCNKT-------VGYLGLAARSAVLARGVEAN-EHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVLG---------VERR------------GRRVRTVWPVAGWASVHSTEGYPILVPVQS--KAFRRWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVP 630
            CI+C  RC+ T       +GYLG   RS        A  E  + L   + V G  GCQ+R    +DSE +  LP G    V           + RR            G+++ T     GWASV S+EGY IL P+ +   A  RWG  R  +  CGHA HL+C +++  SL  RAA  Q +DGR + +++  EF CPLCK LSN+L+P
Sbjct: 1521 CIIC--RCDDTDGENNGPLGYLGHVQRSRYSQMRCSAEIEQDDRLFSTYRVSGHRGCQLRKTEAMDSEPLVCLPTGSLVSVGNTTVSDNYDILSRRVFVRHTEKAQGTGKQIVT----EGWASVQSSEGYVILSPLATLCSASSRWGSTRPIIRQCGHAAHLECVETHTLSLHQRAAGEQPYDGRFAANIDDGEFLCPLCKQLSNVLLP 1723          
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Match: A0A7S3GQQ7_9STRA (E3 ubiquitin-protein ligase (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQQ7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.020e-23
Identity = 75/208 (36.06%), Postives = 96/208 (46.15%), Query Frame = 1
Query:   67 DLARECGAPECIMCHERCNKTVGYLGLAARSAVLARGVEANEHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPGRTCEVLGVERR--GRRVRTVWPVAGWASVHSTE-------GYPILVPVQSKA-----------FRRWGRQRLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPLCKSLSNMLVP 630
            DL  E   PECI+C E+ N  VGYL     S VL      +   E L   F VV   G  V A    D+  + +LP G   E + VE R  GR ++   P  GW S++          G P  +P  SK            F + G  RLH   CGH +H DCWD +FA+   R   N      ++VDV R E  CPLCKS++N L+P
Sbjct:  764 DLYAEETVPECIICREKTNSPVGYLCFLQPSNVLRNAHLTSPDSEELMNVFRVVAFAGVNVHAEPQDDAAVLHILPQG---EHIHVENRDGGRWLKLRAPHTGWCSLYCNADDAPLAAGQPAPLPGNSKTIVNLHPVAELQFAKHGGTRLHASACGHTMHFDCWDMFFAANYARYTNNHRSAELLAVDVERGESLCPLCKSVTNTLLP 968          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8R4_9PHAE7.890e-7764.36E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
A0A4D9D1X7_9STRA1.700e-4343.28E3 ubiquitin-protein ligase n=6 Tax=Monodopsidacea... [more]
A0A836CB31_9STRA6.370e-3031.87E3 ubiquitin-protein ligase n=1 Tax=Tribonema minu... [more]
A0A7S2WN15_9STRA4.450e-2736.95E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Euc... [more]
A0A7S2U9T5_9STRA2.460e-2636.91E3 ubiquitin-protein ligase n=1 Tax=Attheya septen... [more]
B8C846_THAPS2.470e-2635.92E3 ubiquitin-protein ligase n=1 Tax=Thalassiosira ... [more]
A0A7S2L6M7_9STRA1.820e-2538.16E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Ske... [more]
A0A7S1VKD5_9STRA5.570e-2436.84E3 ubiquitin-protein ligase n=1 Tax=Grammatophora ... [more]
A0A7S1VIH2_9STRA5.780e-2436.84E3 ubiquitin-protein ligase n=1 Tax=Grammatophora ... [more]
A0A7S3GQQ7_9STRA1.020e-2336.06E3 ubiquitin-protein ligase (Fragment) n=2 Tax=Spu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:354325..357481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue1e-26
Seed eggNOG ortholog2880.D7G3D4
KEGG koko:K10625,ko:K10626,ko:K11978
GOsGO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.E3 ubiquitin-protein ligase
EggNOG OGsKOG1139@1,KOG1139@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons4
Model size851
Cds size849
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19287.1prot_S-ischiensis_contig8.19287.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 354326..357481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817272.3246434-CDS-S-ischiensis_contig8:354325..3546311622817272.3246434-CDS-S-ischiensis_contig8:354325..354631Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 354326..354631 -
1695740985.0960903-CDS-S-ischiensis_contig8:354325..3546311695740985.0960903-CDS-S-ischiensis_contig8:354325..354631Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 354326..354631 -
1622817272.3357947-CDS-S-ischiensis_contig8:355581..3558121622817272.3357947-CDS-S-ischiensis_contig8:355581..355812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 355582..355812 -
1695740985.106602-CDS-S-ischiensis_contig8:355581..3558121695740985.106602-CDS-S-ischiensis_contig8:355581..355812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 355582..355812 -
1622817272.3467386-CDS-S-ischiensis_contig8:356739..3570181622817272.3467386-CDS-S-ischiensis_contig8:356739..357018Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 356740..357018 -
1695740985.1151667-CDS-S-ischiensis_contig8:356739..3570181695740985.1151667-CDS-S-ischiensis_contig8:356739..357018Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 356740..357018 -
1622817272.3572516-CDS-S-ischiensis_contig8:357448..3574811622817272.3572516-CDS-S-ischiensis_contig8:357448..357481Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 357449..357481 -
1695740985.1256769-CDS-S-ischiensis_contig8:357448..3574811695740985.1256769-CDS-S-ischiensis_contig8:357448..357481Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 357449..357481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19287.1

>prot_S-ischiensis_contig8.19287.1 ID=prot_S-ischiensis_contig8.19287.1|Name=mRNA_S-ischiensis_contig8.19287.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=283bp
PRRRSDARLRQPGKGRAARAAADLARECGAPECIMCHERCNKTVGYLGLA
ARSAVLARGVEANEHHEVLSRQFMVVGSHGCQVRAGLDLDSEKVALLPPG
RTCEVLGVERRGRRVRTVWPVAGWASVHSTEGYPILVPVQSKAFRRWGRQ
RLHLGFCGHAVHLDCWDSYFASLLGRAAANQAFDGRMSVDVNRTEFFCPL
CKSLSNMLVPHVPPGMHPERLAAAGQGAPLPLSSPRSSSSALPAAAAATA
SPDGTADAGATTPSAAAPLRALSELIRWVSPAA
back to top

mRNA from alignment at S-ischiensis_contig8:354325..357481-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19287.1 ID=mRNA_S-ischiensis_contig8.19287.1|Name=mRNA_S-ischiensis_contig8.19287.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3157bp|location=Sequence derived from alignment at S-ischiensis_contig8:354325..357481- (Schizocladia ischiensis KU_0333)
CCACGGCGGAGATCGGACGCCAGGTTGCGTCAGGTGGGAGGAAGAGCCGC GTCGCTTTAACAAAATGTATACTTCGTATGGTTTTTGTTTTTTTTTATGC CGTGATGGGTGCTGTCAGTGGGCGAGGAAACGGCCGAGTTTCATCCGTCC CCGGCGTACAAGTCATGCATATGCTCCGTGCGTGCTGAAGTGTATCGAAG CCCTCCAGCAACAACATCGAAGCCGCCGCCGCCACCGCGGCCGCCGTCGC CCCTAACCCTAGTCGTGATGGGTGCTGTCAGTGGGCGAGGAAACGGCCGA GTTTCATCCGCCCCCAGCTTACAAGTCATGCATACGCTCCGTGCGTGCTG CAGTACATCGAAGCCCTCCGGCAACAACATCGAAGCCGCCGCCGCCACCG CTGCCGCCGTTGCCCCCCCCCCCCCCCCCGGGCGCGCGCGCCGGCGCTGC CCCCCTCCTGCAGCCGGGAAAGGGGCGCGCGGCACGGGCGGCCGCGGACC TGGCCCGGGAGTGCGGGGCGCCCGAGTGCATAATGTGCCACGAGCGGTGC AACAAGACCGTGGGGTATCTGGGCTTGGCCGCCAGGTCCGCCGTGCTGGC GCGGGGCGTGGAGGCCAACGAGCACCACGAGGTGCTGTCCCGGCAGTTTA TGGTGGTTGGGAGCCACGGGTGCCAGGTTCGCGCAGGGCTGGACCTTGAC AGCGAGAAAGTGGCCCTCCTGCCGCCAGGGCGGACGTGCGAGGTACGAAA CTGTATGTAGCTGTGTGAAACTGTACTCTGAGTGACTTGCAGTAGAGACT ACGCAACTGCACTTTGAAGTATGTAGCTGTGTGAAACTATACTCTGTGTG ACTTGCAGCGGAGACCCTTAGGGGCCTGCGATGACACGTTTAATGGTCCT GGACATCTGGAGGAAGTGGCGCCTGTACCGTGCTTGCTCGGTGCTTGACG CGTACTCGATCGAGTACAGTACAGTACCGCTGCTTGTGTGGTCCAGGCAG CGCGTGCCTCGGCGTACAGCGGGGTGGAGCAGAGCGGGGTACGGCCTACC TTGGAAGTACCTTGGAAGCACCCTGCTTGTTGAGTTACGCGCAGGCATGC ACTCTATTCATATTCGCGGTGGTGTTTGGGAGCTCAGCACCGCTTGCTCT CGGCAAGACTTATGCTTCCTCGCTACGTTTTTATGCCCGGCGAGTGCAAG AAGGGTTGACTCCTTCTGCCCGAGGTCCCCAGTTTCGATGTGATGTGGTG TGATGTGATGTCAAACTACAGTGAATTAGAGAGCACATCACATCACATCA CATCACATCACACTAGCGAGTGCGAGAAGGGTAGCTTTTCTGCCCGAGGT CCCCAGTTTGGGACGGGGCACGGGCAGAACTCACATGCCTCGAAAGCAAT CAATTAGAAGACAGCCCGGGAAATCGCCGTCAATAGCCCTGTGAACTCGC GTATGTAGTGACACCTCTTCTTTCCCACTCGTTGTTTATCGTCTTGCAAA AAAACACTGATCGTGCACCTAAGGGACAACAATGTACTAGTACGAGAACA GTCAATCTCACACACGTGCGATTGTACCTCGTTGCATTCTACTATATGAA TCACCTACGGCCGCATCTCATCACCCCCCTTCCCCCCCCTGTCACCCACT CCGCCAACATCCGGTAAAGGTCCTGGGGGTGGAGCGCCGGGGCCGCCGTG TAAGAACCGTGTGGCCGGTCGCCGGCTGGGCGTCTGTGCACAGCACCGAG GGGTACCCCATCCTGGTGCCCGTGCAGAGCAAGGCCTTCCGGCGCTGGGG GAGGCAGCGCCTGCACCTGGGCTTCTGTGGCCACGCCGTGCACCTCGACT GCTGGGACTCCTACTTTGCCTCCCTGCTGGGGCGTGCGGCGGCCAATCAG GTGAGGCTGCGCACAGTGGTGTCCCTTCGGAGGGGCTTTGGAGCACGGTA CAGTGCTTGCGAGTACGGTACGGTACTTCCAAGTACGGTACAGGACAGTG CATATGTGCTACTTCGGATGTGCGAAGTATGTACTGGTAATTGGCTTGCC TTGCGACAGACAGAACCTTGTGTGCTTTGCCGACAAGCCCCAAGTCAAAA CAACTTTGGTTACAGTGCGTTCTGTACTTGGAGGTAACTTTCTTCGCTGG GACGGGGAGCAGCCCCGTCCCCTGCTCGCCGTCGGGCATTCGGCTGCTTT GGCGTGCCGTGGGCGATGCCCCCGCCCGTTTGGACTGTATGTACAGTGCT TGCAGCTCTGTGGCGGCGTTGGCTTGGCGTCCTACGGAACGCTGCATGGA GCGTGCCGGGTTCTTGCCGGCCAAGGCTACAGCACACGTGCTGTACGGTG TACTGTACAGAGTACTGACAGTACACTGTACGTGGTTCTTTCAAGTACTG TGCGTGTACTTGTATGTAGAGCAGTACTTTGTTCGAGCGACACGTTGATT CGGCCTTCCTGCTCTTCGTGAGCCCATCAGCGGTTGGGTGGTGATTGCCT TTTGGCTCCCGGCAGGGGAGCACCCGCTAGGTACAGACGGTGAATGACGG GACAATGCGCCTCGAGTGCACTGTACAATATCTTTGTACTGTGCAATATC TTGTGCTCTTGATCGGCGTCGATGTGATTGATCTTCGATGCAATCGGTTG ATTCACGCCCGTTTTGGATCGCGTGGCACTATAGCTCATGTGCTCTCCCA TGCGTGTCACCGTACTGTAGTGCTTGCCTGTACCTCGAGGTTGTGTGTTT GCTGTGCTCGTACTGCGACCGTGTGCCACGACAGTGTAAATCTGGTAGAG TACAGCGAGCAGCTCACCCATGATTCCCCCGGCCGTGCACACATGGGCAG GCGTTTGACGGGCGCATGTCGGTGGACGTCAACCGGACAGAGTTCTTCTG CCCCCTCTGCAAGAGCCTCAGCAACATGCTGGTGCCGCACGTGCCCCCGG GAATGCACCCGGAGCGCCTGGCCGCCGCGGGCCAAGGAGCTCCCTTGCCC TTGTCCTCCCCCCGTTCCTCGTCCTCCGCTCTCCCCGCCGCCGCCGCCGC CACCGCCTCCCCCGACGGGACGGCGGATGCAGGCGCAACAACGCCCTCGG CGGCGGCGCCCTTGCGCGCCCTCTCGGAGCTCATCCGCTGGGTTAGCCCA GCGGCCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:354325..357481-

>mRNA_S-ischiensis_contig8.19287.1 ID=mRNA_S-ischiensis_contig8.19287.1|Name=mRNA_S-ischiensis_contig8.19287.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1698bp|location=Sequence derived from alignment at S-ischiensis_contig8:354325..357481- (Schizocladia ischiensis KU_0333)
CCACGGCGGAGATCGGACGCCAGGTTGCGTCAGCCACGGCGGAGATCGGA
CGCCAGGTTGCGTCAGCCGGGAAAGGGGCGCGCGGCACGGGCGGCCGCGG
ACCTGGCCCGGGAGTGCGGGGCGCCCGAGTGCATAATGTGCCACGAGCGG
TGCAACAAGACCGTGGGGTATCTGGGCTTGGCCGCCAGGTCCGCCGTGCT
GGCGCGGGGCGTGGAGGCCAACGAGCACCACGAGGTGCTGTCCCGGCAGT
TTATGGTGGTTGGGAGCCACGGGTGCCAGGTTCGCGCAGGGCTGGACCTT
GACAGCGAGAAAGTGGCCCTCCTGCCGCCAGGGCGGACGTGCGAGCCGGG
AAAGGGGCGCGCGGCACGGGCGGCCGCGGACCTGGCCCGGGAGTGCGGGG
CGCCCGAGTGCATAATGTGCCACGAGCGGTGCAACAAGACCGTGGGGTAT
CTGGGCTTGGCCGCCAGGTCCGCCGTGCTGGCGCGGGGCGTGGAGGCCAA
CGAGCACCACGAGGTGCTGTCCCGGCAGTTTATGGTGGTTGGGAGCCACG
GGTGCCAGGTTCGCGCAGGGCTGGACCTTGACAGCGAGAAAGTGGCCCTC
CTGCCGCCAGGGCGGACGTGCGAGGTCCTGGGGGTGGAGCGCCGGGGCCG
CCGTGTAAGAACCGTGTGGCCGGTCGCCGGCTGGGCGTCTGTGCACAGCA
CCGAGGGGTACCCCATCCTGGTGCCCGTGCAGAGCAAGGCCTTCCGGCGC
TGGGGGAGGCAGCGCCTGCACCTGGGCTTCTGTGGCCACGCCGTGCACCT
CGACTGCTGGGACTCCTACTTTGCCTCCCTGCTGGGGCGTGCGGCGGCCA
ATCAGGTCCTGGGGGTGGAGCGCCGGGGCCGCCGTGTAAGAACCGTGTGG
CCGGTCGCCGGCTGGGCGTCTGTGCACAGCACCGAGGGGTACCCCATCCT
GGTGCCCGTGCAGAGCAAGGCCTTCCGGCGCTGGGGGAGGCAGCGCCTGC
ACCTGGGCTTCTGTGGCCACGCCGTGCACCTCGACTGCTGGGACTCCTAC
TTTGCCTCCCTGCTGGGGCGTGCGGCGGCCAATCAGGCGTTTGACGGGCG
CATGTCGGTGGACGTCAACCGGACAGAGTTCTTCTGCCCCCTCTGCAAGA
GCCTCAGCAACATGCTGGTGCCGCACGTGCCCCCGGGAATGCACCCGGAG
CGCCTGGCCGCCGCGGGCCAAGGAGCTCCCTTGCCCTTGTCCTCCCCCCG
TTCCTCGTCCTCCGCTCTCCCCGCCGCCGCCGCCGCCACCGCCTCCCCCG
ACGGGACGGCGGATGCAGGCGCAACAACGCCCTCGGCGGCGGCGCCCTTG
CGCGCCCTCTCGGAGCTCATCCGCTGGGTTAGCCCAGCGGCCGCGTTTGA
CGGGCGCATGTCGGTGGACGTCAACCGGACAGAGTTCTTCTGCCCCCTCT
GCAAGAGCCTCAGCAACATGCTGGTGCCGCACGTGCCCCCGGGAATGCAC
CCGGAGCGCCTGGCCGCCGCGGGCCAAGGAGCTCCCTTGCCCTTGTCCTC
CCCCCGTTCCTCGTCCTCCGCTCTCCCCGCCGCCGCCGCCGCCACCGCCT
CCCCCGACGGGACGGCGGATGCAGGCGCAACAACGCCCTCGGCGGCGGCG
CCCTTGCGCGCCCTCTCGGAGCTCATCCGCTGGGTTAGCCCAGCGGCC
back to top