mRNA_S-ischiensis_contig8.19282.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19282.1
Unique NamemRNA_S-ischiensis_contig8.19282.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:331288..332444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size612
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19282.1prot_S-ischiensis_contig8.19282.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 331310..332056 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817255.2465186-UTR-S-ischiensis_contig8:331287..3313091622817255.2465186-UTR-S-ischiensis_contig8:331287..331309Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 331288..331309 +
1695740973.357585-UTR-S-ischiensis_contig8:331287..3313091695740973.357585-UTR-S-ischiensis_contig8:331287..331309Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 331288..331309 +
1622817255.2893846-UTR-S-ischiensis_contig8:332056..3320951622817255.2893846-UTR-S-ischiensis_contig8:332056..332095Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 332057..332095 +
1695740973.4080229-UTR-S-ischiensis_contig8:332056..3320951695740973.4080229-UTR-S-ischiensis_contig8:332056..332095Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 332057..332095 +
1622817255.3058202-UTR-S-ischiensis_contig8:332406..3324441622817255.3058202-UTR-S-ischiensis_contig8:332406..332444Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 332407..332444 +
1695740973.4401262-UTR-S-ischiensis_contig8:332406..3324441695740973.4401262-UTR-S-ischiensis_contig8:332406..332444Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 332407..332444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817255.2618468-CDS-S-ischiensis_contig8:331309..3317561622817255.2618468-CDS-S-ischiensis_contig8:331309..331756Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 331310..331756 +
1695740973.3689055-CDS-S-ischiensis_contig8:331309..3317561695740973.3689055-CDS-S-ischiensis_contig8:331309..331756Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 331310..331756 +
1622817255.2756197-CDS-S-ischiensis_contig8:331990..3320561622817255.2756197-CDS-S-ischiensis_contig8:331990..332056Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 331991..332056 +
1695740973.3844824-CDS-S-ischiensis_contig8:331990..3320561695740973.3844824-CDS-S-ischiensis_contig8:331990..332056Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 331991..332056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19282.1

>prot_S-ischiensis_contig8.19282.1 ID=prot_S-ischiensis_contig8.19282.1|Name=mRNA_S-ischiensis_contig8.19282.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=171bp
MSTAAGPPIPGSPKAPKVFVPATALRFGPVLPGAGARQLPVCLQPRGSGT
RPMSCITWYPPPELSVGLAGICAGFSPLGFRMGRVLSGLRAQQPSHVLHR
TATAPPPEHAWHCRASHAPRSLWHLQGTAHMIDDREGNGKATHSPLSPTN
HNRNNRDGEGPNLRRRPRIL*
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mRNA from alignment at S-ischiensis_contig8:331288..332444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19282.1 ID=mRNA_S-ischiensis_contig8.19282.1|Name=mRNA_S-ischiensis_contig8.19282.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1157bp|location=Sequence derived from alignment at S-ischiensis_contig8:331288..332444+ (Schizocladia ischiensis KU_0333)
TCGGTGCCGAAGCCCTGGCAACATGTCCACGGCAGCCGGGCCCCCCATCC
CGGGCTCTCCCAAGGCCCCGAAGGTATTTGTGCCGGCTACTGCCCTCCGT
TTCGGTCCCGTACTTCCCGGTGCCGGAGCACGGCAGCTCCCGGTGTGCCT
GCAGCCCCGGGGTTCCGGCACCCGGCCCATGTCTTGCATCACCTGGTACC
CCCCTCCCGAGCTCTCCGTTGGCCTCGCAGGTATCTGTGCAGGCTTCTCC
CCTTTGGGCTTCCGTATGGGTCGCGTACTTTCCGGTCTCCGAGCCCAGCA
ACCCAGCCATGTCTTGCACCGCACTGCTACTGCACCCCCTCCCGAGCATG
CATGGCATTGTCGCGCTTCTCACGCACCTCGTTCCCTCTGGCACCTTCAG
GGCACTGCACACATGATAGATGACCGGGAAGGAAATGGCAAGGCCACCCA
CTCGCCACTGTCCCCGACAGTGAGTGCCTGTTGCCGTCTGAACCGCGCAG
GACTACGATGGGGTGCCATTGAGCCCTGTCCGTGCTGAACACGCCGTGCT
GTCTCGTGCATGTGCTTTGTTCGCGTTTACGATCGTGTGCAGGCGCAGGC
GCGCATGCAGGTGACATACGCTCTGTGGGCGAGGCCATCTGTGTGTTTGC
ATGCGTAGACGTGTGCTGACGGTCCCTCCCGTGCCACTGACTTGCCTGCC
CAGAACCACAACCGCAACAACCGTGATGGGGAGGGCCCCAACCTGCGCCG
GCGCCCCCGTATCCTGTAAATGGAAGAGCAAGACCAGGGCGTGAGTTCAG
GTGCTGAGGTGAGAGCGCCGACACATGCATGCAGGCCACGCTAGCGCTTT
ATCCCCAGCAACAACACGAAAACTGCTCACCGCAGGGAAGGGGACATGCG
TACCCACGCCATCATTGAACGCATTGGCGCTCTCTTGTCGTGCAGCACGG
TCAGAATCACCCATGCCACACATACCCCCCCCCCCCCACCTGCGGCATGC
ATTCTGACCTTCGCCTGCAGCAGCAGGGTTTTGGTGTTTTGTTTTGTGGA
TGGGATCTCCCACTGGCAGCCTGACGTGTGACGCGTGCCTCCTGCCGTAT
CTGCTGCGTTCCAATGCAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGACA
AGTGCGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:331288..332444+

>mRNA_S-ischiensis_contig8.19282.1 ID=mRNA_S-ischiensis_contig8.19282.1|Name=mRNA_S-ischiensis_contig8.19282.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1026bp|location=Sequence derived from alignment at S-ischiensis_contig8:331288..332444+ (Schizocladia ischiensis KU_0333)
ATGTCCACGGCAGCCGGGCCCCCCATCCCGGGCTCTCCCAAGGCCCCGAA
GGTATTTGTGCCGGCTACTGCCCTCCGTTTCGGTCCCGTACTTCCCGGTG
CCGGAGCACGGCAGCTCCCGGTGTGCCTGCAGCCCCGGGGTTCCGGCACC
CGGCCCATGTCTTGCATCACCTGGTACCCCCCTCCCGAGCTCTCCGTTGG
CCTCGCAGGTATCTGTGCAGGCTTCTCCCCTTTGGGCTTCCGTATGGGTC
GCGTACTTTCCGGTCTCCGAGCCCAGCAACCCAGCCATGTCTTGCACCGC
ACTGCTACTGCACCCCCTCCCGAGCATGCATGGCATTGTCGCGCTTCTCA
CGCACCTCGTTCCCTCTGGCACCTTCAGGGCACTGCACACATGATAGATG
ACCGGGAAGGAAATGGCAAGGCCACCCACTCGCCACTGTCCCCGACAATG
TCCACGGCAGCCGGGCCCCCCATCCCGGGCTCTCCCAAGGCCCCGAAGGT
ATTTGTGCCGGCTACTGCCCTCCGTTTCGGTCCCGTACTTCCCGGTGCCG
GAGCACGGCAGCTCCCGGTGTGCCTGCAGCCCCGGGGTTCCGGCACCCGG
CCCATGTCTTGCATCACCTGGTACCCCCCTCCCGAGCTCTCCGTTGGCCT
CGCAGGTATCTGTGCAGGCTTCTCCCCTTTGGGCTTCCGTATGGGTCGCG
TACTTTCCGGTCTCCGAGCCCAGCAACCCAGCCATGTCTTGCACCGCACT
GCTACTGCACCCCCTCCCGAGCATGCATGGCATTGTCGCGCTTCTCACGC
ACCTCGTTCCCTCTGGCACCTTCAGGGCACTGCACACATGATAGATGACC
GGGAAGGAAATGGCAAGGCCACCCACTCGCCACTGTCCCCGACAAACCAC
AACCGCAACAACCGTGATGGGGAGGGCCCCAACCTGCGCCGGCGCCCCCG
TATCCTGTAAAACCACAACCGCAACAACCGTGATGGGGAGGGCCCCAACC
TGCGCCGGCGCCCCCGTATCCTGTAA
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