mRNA_S-ischiensis_contig8.19264.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19264.1
Unique NamemRNA_S-ischiensis_contig8.19264.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:257623..261007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size848
Cds size846
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19264.1prot_S-ischiensis_contig8.19264.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 257623..261007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817255.0655186-CDS-S-ischiensis_contig8:257622..2580091622817255.0655186-CDS-S-ischiensis_contig8:257622..258009Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 257623..258009 -
1695740973.21696-CDS-S-ischiensis_contig8:257622..2580091695740973.21696-CDS-S-ischiensis_contig8:257622..258009Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 257623..258009 -
1622817255.0785782-CDS-S-ischiensis_contig8:258471..2586481622817255.0785782-CDS-S-ischiensis_contig8:258471..258648Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 258472..258648 -
1695740973.2338912-CDS-S-ischiensis_contig8:258471..2586481695740973.2338912-CDS-S-ischiensis_contig8:258471..258648Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 258472..258648 -
1622817255.0897262-CDS-S-ischiensis_contig8:259665..2597761622817255.0897262-CDS-S-ischiensis_contig8:259665..259776Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 259666..259776 -
1695740973.249031-CDS-S-ischiensis_contig8:259665..2597761695740973.249031-CDS-S-ischiensis_contig8:259665..259776Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 259666..259776 -
1622817255.1009457-CDS-S-ischiensis_contig8:260836..2610071622817255.1009457-CDS-S-ischiensis_contig8:260836..261007Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 260837..261007 -
1695740973.2670512-CDS-S-ischiensis_contig8:260836..2610071695740973.2670512-CDS-S-ischiensis_contig8:260836..261007Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 260837..261007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19264.1

>prot_S-ischiensis_contig8.19264.1 ID=prot_S-ischiensis_contig8.19264.1|Name=mRNA_S-ischiensis_contig8.19264.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=282bp
MDRQGRWDWGLGLDKEAMRRVIRRQADLLYKNVENKLSDNVAYFVKDVGL
TWEEMRRLVIRAPVLLCMSVDKNLRPTEAYLTGELGMERNKFKMTVLNQP
SLLTMSVATNIRPKVTLFREELGAQPWEVADMLSACPRVMSASVKARILP
RMKVMLDGGLTPTFDDVRQLCTYTDPRFSTWLSRAIAKQQVSKEASAALA
TAGAGSAAAAAAGGDMAAAATGAGGAAATTLVPAPAAAAAGVGRELHPRS
LSVAGGRGGGQPPRSLHAQSLAELGISYQVDG
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mRNA from alignment at S-ischiensis_contig8:257623..261007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19264.1 ID=mRNA_S-ischiensis_contig8.19264.1|Name=mRNA_S-ischiensis_contig8.19264.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3385bp|location=Sequence derived from alignment at S-ischiensis_contig8:257623..261007- (Schizocladia ischiensis KU_0333)
ATGGACCGGCAGGGGCGCTGGGACTGGGGCCTGGGGCTTGATAAGGAGGC
GATGCGGAGGGTGATCCGGCGGCAGGCGGATTTATTGTACAAGAACGTGG
AGAACAAGCTGTCCGATAATGTGGCGTACTTTGTGAAAGACGTGGGGCTC
ACCTGGGAGGAGATGCGCAGGGTAAGTTATACTAAGTTTGCCTACTGTAC
TGCGGGGGGCTTGGCGCGGTGTTCCTTTTGTGGAGGACCGGGCCCCGGGT
TGGGCCGGGCCGGGCCGGGCTGGAATCGTTGGAGTGTTTTCTGGAAGGGC
GGGCCAGCCGGCGGAGCGAGTTCCTCGCTGCTTTTGTATCTGTGGTGGTA
CTGTACTGTGCAGCAGTGTACGGTAGAGCTCTAGTGCAGCACTTGTACTG
TACGGTGCTACAGTACTCGAGTACCTTTGTAAATCCTGCGCTGTACATTC
TTTGTCAGAGTGACAATCTGTGCTTGCTCGTGCGTTGGCTGATAGCGCCT
GCTAGGCCGGGCGAGGCTTGCAAAAGTCACGACAGTACCTAGCTACTCAT
GTTGCGCTTGCCGTGGGTAGTCCCGAGACCACTGCCCATGCGGCTCGGCC
GAGTATTGTAGTTATTACTTGGAAGTTCTCGATAGATGGACCAGACGAGG
AGTGCGTGCGGTTGAGAGTTTGCGGAGAGTCTGAAGGATCTTCGGGCCCG
GTCGCCGACAGAATGAAAGAAAGCCGTCTCAACAATTTTTGAGGAAACCG
AGTGTTCGGCTCGGTTGGGGCTCTTTTTTCTTTTTCGGCGAGCGTCGCGG
GGCCTGACTACTTACGAATACGACAGCCCTCAAGCGCCCAACCTACTGTC
TCGGGAAGAATTCTCATGCACTTGCTTGGAAGTGCAATACTTCTAAGTGA
GAAGTGGGGGGGGAACCGCCGCATCCGCCCGAGCCAACGGGACTACAGTA
ACACCCCAGGCCCGACCCCACGGCCGCCGTGCGTGTCAGAACAGCGGGGA
ACGCCGTTAGACTAGCCTGCGTAGGTTGGTCTAACGGTGTTCCCTGCCGT
TCTGACAGGTAGCACACTACTGTAGCACGTGTTATAGTACAGTACCAAGC
ACGCGCTTGCAAGCTGTACATCCAAGCACTTTGAGCTTGAAGTAGAGTGT
TGCGCCCCCGGCGGCGCACTGTGCGGCGGTGACCCGCCATGTGCTGCGGG
GTGCGCGTGATGTGTTTGCGTGTTGCTGCAGTTGGTCATCCGGGCGCCGG
TGCTACTGTGCATGAGTGTGGACAAAAACCTGCGCCCCACGGAGGCCTAC
CTCACGGGAGAGCTGGGCATGGAGCGCAACAAGTTCAAGATGGTGTGTGT
GTGTGTGATGTGATGTGATGTGATGTGCACAAAAAAACACTGTAGTTTGA
CATCACATCACATCACATTGTGTCATCGGTAGTGTGTGTGTGTGTGTTGC
AATGGGTGCACGATAGCCCACTCCAAACCGACTTGGCGCTCATGCTGCGC
GCTGCTCTCCCAAGTGCTGCTCTTTGTGTGTACAGCGCTGTACTGTGCGG
TAGCCGTACAGTACAGTTCATGGTTAACTGTACATGAGTCACTCTCTGGC
TGTGGGCATGTGGCAGCTCGTGGAATGTGTTCCTTTGTTCTTCTCTCTGT
CTCTCTGTCTCTCGCTCTCTATTGCCTATCTCTATATCCGTCTCTTTCTC
TCTCTCTTTCCCTCCATCTCGCTTCCCCCTCCTCCCTTCCTCCCTCCCTC
CCTCCCTCCTCCAGTGATAACACATGGCATGTTTGTTCAAAGCACACAAT
GCGAGCTCTCGTATCGAAACGAAACATGGAACAGACGCGTGGACGGCGCA
TGTACGAGTACTCGAGAACATTTGAATACGTGCGTTGACGGCAAATTCGT
CAGCTGACTGATCGCCCCCTCCCCTGGCCGCTACAATACCTACTTCCGGG
AACTACTGCTGTACTTGGAACTAAACTAGTCTACTACTTCGAAGTATATA
CGTTAGAGCTCTGGATAGTACTGCCGAGTCTGTAGTCTGTGCTCACAAGT
ACATAAGTGCACCGCAACCTACGTCAACTACAGTAGCAATCAATGTACTG
CGCTTGGCAAGCAATTCTGTAACCGTCGACCGATTCCAGCACATCAAGAG
CCGCTTCGCTCCGATGCGTCATCACCGCCTCCCCCCTCCCTCTCCTCCTT
CCTCCCCCTCCCCACACCCCACCCTACACCCCATCCCTCCCTCCCTCCCT
CCCTCACGCACACACCCACCCGCGCCGCAACATGCACCGCACAGCACACC
TGCTAACGGCACCCCCCCCGCCCAAACCTAATACCCGCCCCCCCCCGCCC
CTTCCGCAGACCGTGCTGAACCAGCCGTCATTGCTGACCATGAGCGTGGC
GACCAACATCCGGCCCAAGGTCACACTCTTCCGGGAGGAGCTGGGGGCCC
AGCCCTGGGAGGTTGCGGACATGCTCAGCGCGTGCCCGCGGGTCATGAGC
GCCAGCGTCAAGGCCCGCATCCTCCCCCGCATGAAGGTATGTGTGTGTGT
GTGTGTGTGCATGTGTACTCACGTTGGTCTTGCCGTAGTCCCGAGACCAT
TGACCGTGCGCCTCGTCGAGTATGTATACCTCCAAGTATATGTTTGTACT
GTACTCATGCGACAAAACCTTGGGTGCTTTGCCGACAGCCCTAGTAGTTT
ACGTACTGTGCATATACACTACTGCTGCTTGTACTCGAGTCGTACATACA
GTGGTACTGCCACTGTACTGTGTCCTGCGGCGGTACAGCAATAGATACTT
ACCCCCGTAGTCGTAGCCGTCCCCCGGCCCACACGTGGCACCGCGCCCGC
GGCCGCGGCCGCGGACACACCACCACACACTTCCCCGCCCCGCCGCAGAA
GCAGTCCTCCTCCTCGCCCAGCAATCCCACGCTCATCCATCGCTGGTGAC
ACCACCAACTTGCGCTCCAATCCCCCCGCTCGCACACACACGCGGCAGGT
GATGCTCGACGGCGGCCTCACCCCGACCTTCGACGACGTGCGCCAGCTCT
GCACCTACACCGACCCCCGCTTCTCCACCTGGCTCTCGCGCGCCATCGCC
AAGCAACAAGTCTCCAAGGAGGCGTCCGCCGCCCTCGCCACCGCAGGGGC
CGGCTCCGCCGCCGCCGCCGCCGCCGGAGGGGACATGGCTGCTGCCGCCA
CTGGTGCTGGCGGTGCCGCCGCGACGACCCTGGTGCCGGCCCCTGCAGCA
GCGGCGGCCGGCGTCGGCAGGGAGCTGCACCCTCGTTCGCTGTCTGTCGC
GGGGGGGCGAGGAGGCGGGCAGCCGCCACGCTCGCTGCACGCGCAGAGCC
TGGCCGAGTTGGGCATATCGTACCAGGTGGACGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:257623..261007-

>mRNA_S-ischiensis_contig8.19264.1 ID=mRNA_S-ischiensis_contig8.19264.1|Name=mRNA_S-ischiensis_contig8.19264.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1692bp|location=Sequence derived from alignment at S-ischiensis_contig8:257623..261007- (Schizocladia ischiensis KU_0333)
ATGGACCGGCAGGGGCGCTGGGACTGGGGCCTGGGGCTTGATAAGGAGGC
GATGCGGAGGGTGATCCGGCGGCAGGCGGATTTATTGTACAAGAACGTGG
AGAACAAGCTGTCCGATAATGTGGCGTACTTTGTGAAAGACGTGGGGCTC
ACCTGGGAGGAGATGCGCAGGATGGACCGGCAGGGGCGCTGGGACTGGGG
CCTGGGGCTTGATAAGGAGGCGATGCGGAGGGTGATCCGGCGGCAGGCGG
ATTTATTGTACAAGAACGTGGAGAACAAGCTGTCCGATAATGTGGCGTAC
TTTGTGAAAGACGTGGGGCTCACCTGGGAGGAGATGCGCAGGTTGGTCAT
CCGGGCGCCGGTGCTACTGTGCATGAGTGTGGACAAAAACCTGCGCCCCA
CGGAGGCCTACCTCACGGGAGAGCTGGGCATGGAGCGCAACAAGTTCAAG
ATGTTGGTCATCCGGGCGCCGGTGCTACTGTGCATGAGTGTGGACAAAAA
CCTGCGCCCCACGGAGGCCTACCTCACGGGAGAGCTGGGCATGGAGCGCA
ACAAGTTCAAGATGACCGTGCTGAACCAGCCGTCATTGCTGACCATGAGC
GTGGCGACCAACATCCGGCCCAAGGTCACACTCTTCCGGGAGGAGCTGGG
GGCCCAGCCCTGGGAGGTTGCGGACATGCTCAGCGCGTGCCCGCGGGTCA
TGAGCGCCAGCGTCAAGGCCCGCATCCTCCCCCGCATGAAGACCGTGCTG
AACCAGCCGTCATTGCTGACCATGAGCGTGGCGACCAACATCCGGCCCAA
GGTCACACTCTTCCGGGAGGAGCTGGGGGCCCAGCCCTGGGAGGTTGCGG
ACATGCTCAGCGCGTGCCCGCGGGTCATGAGCGCCAGCGTCAAGGCCCGC
ATCCTCCCCCGCATGAAGGTGATGCTCGACGGCGGCCTCACCCCGACCTT
CGACGACGTGCGCCAGCTCTGCACCTACACCGACCCCCGCTTCTCCACCT
GGCTCTCGCGCGCCATCGCCAAGCAACAAGTCTCCAAGGAGGCGTCCGCC
GCCCTCGCCACCGCAGGGGCCGGCTCCGCCGCCGCCGCCGCCGCCGGAGG
GGACATGGCTGCTGCCGCCACTGGTGCTGGCGGTGCCGCCGCGACGACCC
TGGTGCCGGCCCCTGCAGCAGCGGCGGCCGGCGTCGGCAGGGAGCTGCAC
CCTCGTTCGCTGTCTGTCGCGGGGGGGCGAGGAGGCGGGCAGCCGCCACG
CTCGCTGCACGCGCAGAGCCTGGCCGAGTTGGGCATATCGTACCAGGTGG
ACGGTGTGATGCTCGACGGCGGCCTCACCCCGACCTTCGACGACGTGCGC
CAGCTCTGCACCTACACCGACCCCCGCTTCTCCACCTGGCTCTCGCGCGC
CATCGCCAAGCAACAAGTCTCCAAGGAGGCGTCCGCCGCCCTCGCCACCG
CAGGGGCCGGCTCCGCCGCCGCCGCCGCCGCCGGAGGGGACATGGCTGCT
GCCGCCACTGGTGCTGGCGGTGCCGCCGCGACGACCCTGGTGCCGGCCCC
TGCAGCAGCGGCGGCCGGCGTCGGCAGGGAGCTGCACCCTCGTTCGCTGT
CTGTCGCGGGGGGGCGAGGAGGCGGGCAGCCGCCACGCTCGCTGCACGCG
CAGAGCCTGGCCGAGTTGGGCATATCGTACCAGGTGGACGGT
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