mRNA_S-ischiensis_contig8.19235.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: D8LSF3_ECTSI (40S ribosomal protein S26 n=3 Tax=Eukaryota TaxID=2759 RepID=D8LSF3_ECTSI) HSP 1 Score: 182 bits (461), Expect = 1.180e-57 Identity = 94/107 (87.85%), Postives = 101/107 (94.39%), Query Frame = 1
Query: 1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHRPKRD 321
M+VKRRNHGRNKKGRGHV RVRCASTAKA+PKDKAIKR IV RNIVDASSLRDIREASV++ Y LPKLYIKQYYCVEAAVHQRIVRSRS +TRRNR+PP+RHRPKRD
Sbjct: 1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIV-RNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAETRRNRDPPVRHRPKRD 106
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A835YLU3_9STRA (40S ribosomal protein S26 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLU3_9STRA) HSP 1 Score: 174 bits (442), Expect = 9.310e-55 Identity = 92/107 (85.98%), Postives = 97/107 (90.65%), Query Frame = 1
Query: 1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHRPKRD 321
M+VKRRNHGRNKKGRGHVKRVRC STAKA+PKDKAIKR IV RNIVDASSLRD+REASVY Y LPKLYIKQYYCVEAAVHQRIVRSRS + RRNREPP R RPKR+
Sbjct: 1 MTVKRRNHGRNKKGRGHVKRVRCVSTAKAIPKDKAIKRFIV-RNIVDASSLRDLREASVYANYALPKLYIKQYYCVEAAVHQRIVRSRSAEARRNREPPARVRPKRE 106
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A7S2MQP1_9STRA (40S ribosomal protein S26 n=4 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2MQP1_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.660e-50 Identity = 84/101 (83.17%), Postives = 92/101 (91.09%), Query Frame = 1
Query: 1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIR 303
M+VKRRNHGRNKKGRGHVKRVRCAST KA+PKDKAIKR IV RNIVDASS+RDIR+AS +E Y LPK+YIKQYYC+EAAVHQRIVRSRS + RRNREPP R
Sbjct: 24 MTVKRRNHGRNKKGRGHVKRVRCASTGKAIPKDKAIKRFIV-RNIVDASSMRDIRDASAFEAYALPKIYIKQYYCIEAAVHQRIVRSRSIENRRNREPPAR 123
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A7S2SUN8_9STRA (40S ribosomal protein S26 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUN8_9STRA) HSP 1 Score: 162 bits (411), Expect = 6.990e-50 Identity = 86/103 (83.50%), Postives = 92/103 (89.32%), Query Frame = 1
Query: 1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHR 309
M+VKRR+HGRNKKGRGHVKRVRCAST KA+PKDKAIKR IV RNIVDASS+RDIREAS +E Y LPKLYIKQYY VEAAVHQRIVRSRS + RRNREPP R R
Sbjct: 15 MTVKRRSHGRNKKGRGHVKRVRCASTGKAIPKDKAIKRFIV-RNIVDASSMRDIREASAFENYALPKLYIKQYYSVEAAVHQRIVRSRSTENRRNREPPARFR 116
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A7S3K046_9STRA (40S ribosomal protein S26 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K046_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.030e-48 Identity = 82/103 (79.61%), Postives = 90/103 (87.38%), Query Frame = 1
Query: 1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHR 309
M+VKRR HGRNKKGRGHV RVRC ST KA+PKDKAIKR +V RNIVDASS+RDIR+AS YE Y LPKLYIKQYYC+EAAVHQRIVR RSR R+NREPP+R R
Sbjct: 1 MAVKRRAHGRNKKGRGHVLRVRCVSTGKAIPKDKAIKRFVV-RNIVDASSMRDIRDASAYESYALPKLYIKQYYCIEAAVHQRIVRLRSRTERKNREPPMRRR 102
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A7S0GMG9_9STRA (40S ribosomal protein S26 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GMG9_9STRA) HSP 1 Score: 159 bits (401), Expect = 1.660e-48 Identity = 83/101 (82.18%), Postives = 90/101 (89.11%), Query Frame = 1
Query: 1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIR 303
M+VKRRNHGRNKKGRGHVKRVRCAST KA+PKDKAIKR IV RNIVDASSLRDI+EAS Y+ YTLPKLY+K YYCVEAAVHQRIVR RSR+ R+ R PP R
Sbjct: 1 MTVKRRNHGRNKKGRGHVKRVRCASTGKAIPKDKAIKRFIV-RNIVDASSLRDIKEASAYDDYTLPKLYLKMYYCVEAAVHQRIVRGRSREGRKIRTPPPR 100
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A067D0A6_SAPPC (40S ribosomal protein S26 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D0A6_SAPPC) HSP 1 Score: 157 bits (398), Expect = 4.750e-48 Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 1
Query: 1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHRPKR 318
M+VKRRNHGRNKKGRGHVKRV C STAK +PKDKAIKR +V RN+VDAS++RD++EASVYE Y LPK+YIK YY +EAA+HQRIVR RS D R+NREPP R RPKR
Sbjct: 1 MTVKRRNHGRNKKGRGHVKRVHCVSTAKLIPKDKAIKRFVV-RNMVDASAMRDLKEASVYESYALPKIYIKNYYSIEAAIHQRIVRVRSVDGRKNREPPARFRPKR 105
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A7S3MCB3_9STRA (40S ribosomal protein S26 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCB3_9STRA) HSP 1 Score: 157 bits (397), Expect = 6.750e-48 Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 1
Query: 1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHRP 312
M+VKRRNHGRNK GRGHVKRVRC STAKA+PKDKAIKR +V RNIVD+S+LRDI+E+S YE Y LPKLYIKQYYC+EAAVHQRIVR RS R+NR PP+R RP
Sbjct: 1 MTVKRRNHGRNKHGRGHVKRVRCVSTAKAIPKDKAIKRFLV-RNIVDSSALRDIKESSAYENYQLPKLYIKQYYCIEAAVHQRIVRVRSALDRKNRAPPVRVRP 103
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A4D9D267_9STRA (40S ribosomal protein S26 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D267_9STRA) HSP 1 Score: 156 bits (395), Expect = 1.360e-47 Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 1
Query: 1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHRP 312
M+VKRRNHGRNKKGRGHVKRVRCAST KAVPKDKAIKR++V R+IVD SS RDI+EA V+E Y LPKLYIKQYY VEAAVHQR+VRSRS++ RR REPP R RP
Sbjct: 1 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVV-RSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRIREPPERKRP 103
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Match: A0A8J5XGW0_DIALT (40S ribosomal protein S26 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XGW0_DIALT) HSP 1 Score: 155 bits (392), Expect = 3.900e-47 Identity = 78/106 (73.58%), Postives = 91/106 (85.85%), Query Frame = 1
Query: 1 MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSLRDIREASVYEGYTLPKLYIKQYYCVEAAVHQRIVRSRSRDTRRNREPPIRHRPKR 318
M+VKRRNHGRNK GRGHVKRVRC ST KA+PKDKA+KR IV RNIV+ S+LRD++EAS EGY LPK+YIK YYC+EAA+HQR+VR RSR+ RR REPP+R RP R
Sbjct: 1 MTVKRRNHGRNKHGRGHVKRVRCVSTGKAIPKDKAVKRFIV-RNIVETSALRDMKEASCIEGYQLPKIYIKNYYCIEAAIHQRVVRVRSREARRIREPPVRPRPPR 105 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19235.1 >prot_S-ischiensis_contig8.19235.1 ID=prot_S-ischiensis_contig8.19235.1|Name=mRNA_S-ischiensis_contig8.19235.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=108bp MSVKRRNHGRNKKGRGHVKRVRCASTAKAVPKDKAIKRIIVSRNIVDASSback to top mRNA from alignment at S-ischiensis_contig8:62870..67852- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19235.1 ID=mRNA_S-ischiensis_contig8.19235.1|Name=mRNA_S-ischiensis_contig8.19235.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4983bp|location=Sequence derived from alignment at S-ischiensis_contig8:62870..67852- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:62870..67852- >mRNA_S-ischiensis_contig8.19235.1 ID=mRNA_S-ischiensis_contig8.19235.1|Name=mRNA_S-ischiensis_contig8.19235.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=648bp|location=Sequence derived from alignment at S-ischiensis_contig8:62870..67852- (Schizocladia ischiensis KU_0333)back to top |